EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0025780 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 41563 bases
Position: chr4:33568-75130
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0061296	Methyltransf_15	PF09445.10	1.3e-29	1	1
MGP_CAROLIEiJ_P0061296	UPF0020	PF01170.18	3.2e-05	1	1
MGP_CAROLIEiJ_P0061296	Met_10	PF02475.16	1.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0061296	-	3976	-	MGP_CAROLIEiJ_P0061296	818 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0025780's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0025780's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0025780	-	99	92.121	MGP_CAROLIEiJ_G0025779	-	99	92.121

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0025780	-	98	66.859	ENSG00000137574	TGS1	99	66.859	Homo_sapiens
MGP_CAROLIEiJ_G0025780	-	98	65.278	ENSAMEG00000001781	TGS1	99	65.323	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0025780	-	95	33.916	ENSAOCG00000022799	lyn	96	33.643	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0025780	-	52	58.730	ENSAPEG00000019723	TGS1	61	73.418	Amphiprion_percula
MGP_CAROLIEiJ_G0025780	-	69	76.582	ENSATEG00000005927	lyn	64	76.582	Anabas_testudineus
MGP_CAROLIEiJ_G0025780	-	75	44.460	ENSAPLG00000006073	-	97	44.476	Anas_platyrhynchos
MGP_CAROLIEiJ_G0025780	-	97	42.625	ENSACAG00000017988	TGS1	92	43.886	Anolis_carolinensis
MGP_CAROLIEiJ_G0025780	-	98	62.121	ENSANAG00000035525	TGS1	99	62.587	Aotus_nancymaae
MGP_CAROLIEiJ_G0025780	-	58	63.265	ENSACLG00000000261	lyn	98	35.427	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0025780	-	96	35.376	ENSAMXG00000014086	lyn	98	35.903	Astyanax_mexicanus
MGP_CAROLIEiJ_G0025780	-	98	60.532	ENSBTAG00000005898	TGS1	99	61.227	Bos_taurus
MGP_CAROLIEiJ_G0025780	-	98	64.896	ENSCJAG00000016657	TGS1	98	65.127	Callithrix_jacchus
MGP_CAROLIEiJ_G0025780	-	98	63.657	ENSCAFG00000007011	TGS1	99	64.055	Canis_familiaris
MGP_CAROLIEiJ_G0025780	-	98	63.934	ENSCAFG00020015485	TGS1	99	64.336	Canis_lupus_dingo
MGP_CAROLIEiJ_G0025780	-	98	59.080	ENSCHIG00000013976	TGS1	99	59.655	Capra_hircus
MGP_CAROLIEiJ_G0025780	-	98	65.549	ENSTSYG00000000171	TGS1	99	65.549	Carlito_syrichta
MGP_CAROLIEiJ_G0025780	-	94	61.529	ENSCAPG00000013732	TGS1	99	61.406	Cavia_aperea
MGP_CAROLIEiJ_G0025780	-	98	62.920	ENSCPOG00000009713	TGS1	99	62.920	Cavia_porcellus
MGP_CAROLIEiJ_G0025780	-	98	65.783	ENSCCAG00000030476	TGS1	98	65.783	Cebus_capucinus
MGP_CAROLIEiJ_G0025780	-	98	66.282	ENSCATG00000035375	TGS1	99	66.282	Cercocebus_atys
MGP_CAROLIEiJ_G0025780	-	98	63.731	ENSCLAG00000009468	TGS1	99	63.847	Chinchilla_lanigera
MGP_CAROLIEiJ_G0025780	-	94	66.955	ENSCSAG00000014611	TGS1	99	66.955	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0025780	-	98	63.899	ENSCHOG00000001462	TGS1	99	64.245	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0025780	-	97	47.197	ENSCPBG00000004958	TGS1	99	48.767	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0025780	-	98	66.166	ENSCANG00000041389	TGS1	99	66.166	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0025780	-	99	77.289	ENSCGRG00001019470	Tgs1	99	76.941	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0025780	-	99	75.372	ENSCGRG00000008981	Tgs1	99	75.372	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0025780	-	96	33.914	ENSDARG00000107511	lyn	99	61.667	Danio_rerio
MGP_CAROLIEiJ_G0025780	-	98	62.558	ENSDNOG00000008353	TGS1	99	62.442	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0025780	-	98	66.861	ENSDORG00000012484	Tgs1	99	66.861	Dipodomys_ordii
MGP_CAROLIEiJ_G0025780	-	79	65.789	ENSETEG00000005126	TGS1	83	65.789	Echinops_telfairi
MGP_CAROLIEiJ_G0025780	-	95	66.341	ENSEASG00005016371	TGS1	97	66.098	Equus_asinus_asinus
MGP_CAROLIEiJ_G0025780	-	98	65.323	ENSECAG00000019399	TGS1	99	65.092	Equus_caballus
MGP_CAROLIEiJ_G0025780	-	66	92.105	ENSEEUG00000001735	TGS1	68	92.105	Erinaceus_europaeus
MGP_CAROLIEiJ_G0025780	-	55	65.888	ENSELUG00000012537	lyn	54	65.888	Esox_lucius
MGP_CAROLIEiJ_G0025780	-	98	64.079	ENSFCAG00000011478	TGS1	99	64.129	Felis_catus
MGP_CAROLIEiJ_G0025780	-	87	43.223	ENSFALG00000010249	TGS1	99	43.558	Ficedula_albicollis
MGP_CAROLIEiJ_G0025780	-	98	66.009	ENSFDAG00000011405	TGS1	99	66.125	Fukomys_damarensis
MGP_CAROLIEiJ_G0025780	-	97	42.810	ENSGALG00000015340	TGS1	97	43.307	Gallus_gallus
MGP_CAROLIEiJ_G0025780	-	97	46.060	ENSGAGG00000019590	TGS1	99	47.725	Gopherus_agassizii
MGP_CAROLIEiJ_G0025780	-	98	66.975	ENSGGOG00000008624	TGS1	99	66.975	Gorilla_gorilla
MGP_CAROLIEiJ_G0025780	-	68	37.907	ENSHBUG00000003518	lyn	98	38.250	Haplochromis_burtoni
MGP_CAROLIEiJ_G0025780	-	98	50.059	ENSHGLG00000000284	TGS1	93	63.218	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0025780	-	97	34.759	ENSIPUG00000002294	tgs1	99	35.667	Ictalurus_punctatus
MGP_CAROLIEiJ_G0025780	-	98	66.009	ENSSTOG00000009597	TGS1	99	66.009	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0025780	-	98	67.254	ENSJJAG00000016239	Tgs1	100	66.901	Jaculus_jaculus
MGP_CAROLIEiJ_G0025780	-	97	34.070	ENSLBEG00000027341	-	98	35.063	Labrus_bergylta
MGP_CAROLIEiJ_G0025780	-	98	40.487	ENSLACG00000008074	TGS1	100	40.265	Latimeria_chalumnae
MGP_CAROLIEiJ_G0025780	-	98	36.939	ENSLOCG00000005492	lyn	99	36.842	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0025780	-	98	62.081	ENSLAFG00000015386	TGS1	99	62.081	Loxodonta_africana
MGP_CAROLIEiJ_G0025780	-	98	65.935	ENSMFAG00000029838	TGS1	99	66.166	Macaca_fascicularis
MGP_CAROLIEiJ_G0025780	-	98	67.285	ENSMMUG00000005478	TGS1	99	67.285	Macaca_mulatta
MGP_CAROLIEiJ_G0025780	-	98	66.166	ENSMNEG00000023719	TGS1	99	66.397	Macaca_nemestrina
MGP_CAROLIEiJ_G0025780	-	98	66.397	ENSMLEG00000034807	TGS1	99	66.397	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0025780	-	97	35.052	ENSMAMG00000009542	TGS1	98	35.132	Mastacembelus_armatus
MGP_CAROLIEiJ_G0025780	-	58	63.265	ENSMZEG00005015681	lyn	98	35.350	Maylandia_zebra
MGP_CAROLIEiJ_G0025780	-	82	42.638	ENSMGAG00000010966	TGS1	99	42.733	Meleagris_gallopavo
MGP_CAROLIEiJ_G0025780	-	99	76.185	ENSMAUG00000009875	Tgs1	99	76.185	Mesocricetus_auratus
MGP_CAROLIEiJ_G0025780	-	98	67.474	ENSMICG00000011199	TGS1	99	67.359	Microcebus_murinus
MGP_CAROLIEiJ_G0025780	-	98	71.065	ENSMOCG00000019560	Tgs1	100	71.065	Microtus_ochrogaster
MGP_CAROLIEiJ_G0025780	-	84	54.545	ENSMODG00000009174	TGS1	98	54.690	Monodelphis_domestica
MGP_CAROLIEiJ_G0025780	-	55	65.025	ENSMALG00000021440	lyn	90	36.624	Monopterus_albus
MGP_CAROLIEiJ_G0025780	-	99	89.931	ENSMUSG00000028233	Tgs1	99	89.931	Mus_musculus
MGP_CAROLIEiJ_G0025780	-	99	85.797	MGP_PahariEiJ_G0023901	-	99	85.450	Mus_pahari
MGP_CAROLIEiJ_G0025780	-	99	93.129	MGP_PahariEiJ_G0023902	-	99	92.761	Mus_pahari
MGP_CAROLIEiJ_G0025780	-	59	99.052	MGP_SPRETEiJ_G0026726	-	99	99.052	Mus_spretus
MGP_CAROLIEiJ_G0025780	-	99	89.919	MGP_SPRETEiJ_G0026727	-	99	89.919	Mus_spretus
MGP_CAROLIEiJ_G0025780	-	94	65.056	ENSMPUG00000010475	TGS1	99	65.594	Mustela_putorius_furo
MGP_CAROLIEiJ_G0025780	-	98	62.399	ENSMLUG00000014857	TGS1	99	62.399	Myotis_lucifugus
MGP_CAROLIEiJ_G0025780	-	98	69.329	ENSNGAG00000019532	Tgs1	99	69.792	Nannospalax_galili
MGP_CAROLIEiJ_G0025780	-	98	66.397	ENSNLEG00000001101	TGS1	99	66.397	Nomascus_leucogenys
MGP_CAROLIEiJ_G0025780	-	91	52.357	ENSMEUG00000001697	TGS1	99	52.854	Notamacropus_eugenii
MGP_CAROLIEiJ_G0025780	-	89	59.658	ENSODEG00000002948	TGS1	97	59.658	Octodon_degus
MGP_CAROLIEiJ_G0025780	-	87	52.185	ENSOANG00000021853	TGS1	98	52.060	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0025780	-	98	65.202	ENSOCUG00000017522	TGS1	99	65.202	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0025780	-	98	65.553	ENSOGAG00000012572	TGS1	99	65.553	Otolemur_garnettii
MGP_CAROLIEiJ_G0025780	-	98	60.438	ENSOARG00000014613	TGS1	99	61.015	Ovis_aries
MGP_CAROLIEiJ_G0025780	-	98	66.975	ENSPPAG00000039058	TGS1	99	66.975	Pan_paniscus
MGP_CAROLIEiJ_G0025780	-	98	63.615	ENSPPRG00000000677	TGS1	99	63.552	Panthera_pardus
MGP_CAROLIEiJ_G0025780	-	98	63.615	ENSPTIG00000005122	TGS1	99	63.552	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0025780	-	98	66.859	ENSPTRG00000020262	TGS1	99	66.859	Pan_troglodytes
MGP_CAROLIEiJ_G0025780	-	98	66.282	ENSPANG00000018910	TGS1	99	66.282	Papio_anubis
MGP_CAROLIEiJ_G0025780	-	98	46.432	ENSPSIG00000014983	TGS1	99	46.981	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0025780	-	99	74.971	ENSPEMG00000007957	Tgs1	99	75.898	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0025780	-	98	57.482	ENSPCIG00000016232	TGS1	98	57.957	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0025780	-	98	66.859	ENSPPYG00000018597	TGS1	99	67.698	Pongo_abelii
MGP_CAROLIEiJ_G0025780	-	98	59.791	ENSPCAG00000000143	TGS1	99	59.791	Procavia_capensis
MGP_CAROLIEiJ_G0025780	-	98	67.128	ENSPCOG00000013537	TGS1	99	66.782	Propithecus_coquereli
MGP_CAROLIEiJ_G0025780	-	98	59.328	ENSPVAG00000016399	TGS1	99	59.328	Pteropus_vampyrus
MGP_CAROLIEiJ_G0025780	-	95	34.335	ENSPNAG00000022249	lyn	97	35.921	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0025780	-	98	80.886	ENSRNOG00000008156	Tgs1	99	80.536	Rattus_norvegicus
MGP_CAROLIEiJ_G0025780	-	98	65.549	ENSRBIG00000041893	TGS1	99	65.665	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0025780	-	98	66.166	ENSRROG00000035127	TGS1	99	66.166	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0025780	-	94	67.327	ENSSBOG00000024469	TGS1	99	67.203	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0025780	-	98	53.432	ENSSHAG00000012878	TGS1	100	54.613	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0025780	-	96	34.514	ENSSFOG00015001308	tgs1	97	35.194	Scleropages_formosus
MGP_CAROLIEiJ_G0025780	-	66	66.092	ENSSPAG00000002170	lyn	64	68.862	Stegastes_partitus
MGP_CAROLIEiJ_G0025780	-	91	59.618	ENSSSCG00000006251	TGS1	98	60.000	Sus_scrofa
MGP_CAROLIEiJ_G0025780	-	95	45.520	ENSTGUG00000011050	TGS1	100	45.878	Taeniopygia_guttata
MGP_CAROLIEiJ_G0025780	-	87	34.447	ENSTNIG00000018133	lyn	99	34.864	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0025780	-	83	94.737	ENSTBEG00000010953	TGS1	82	94.737	Tupaia_belangeri
MGP_CAROLIEiJ_G0025780	-	92	73.214	ENSTTRG00000017239	TGS1	93	73.214	Tursiops_truncatus
MGP_CAROLIEiJ_G0025780	-	98	65.578	ENSUAMG00000027718	TGS1	99	65.344	Ursus_americanus
MGP_CAROLIEiJ_G0025780	-	94	66.171	ENSUMAG00000009761	TGS1	99	65.842	Ursus_maritimus
MGP_CAROLIEiJ_G0025780	-	82	58.003	ENSVPAG00000001166	TGS1	87	58.824	Vicugna_pacos
MGP_CAROLIEiJ_G0025780	-	94	64.179	ENSVVUG00000017821	TGS1	99	64.356	Vulpes_vulpes
MGP_CAROLIEiJ_G0025780	-	98	40.317	ENSXETG00000005648	tgs1	99	40.724	Xenopus_tropicalis