EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0025810 (Gene tree)
Gene ID: 110292540
Gene Symbol: Rad54b
Alias: E130016E03Rik
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 69951 bases
Position: chr4:7607827-7677777
Accession: 110292540
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0061456	ResIII	PF04851.15	5.4e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0061460	-	691	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0061454	-	2382	-	MGP_CAROLIEiJ_P0061454	98 (aa)	XP_021015543	UPI000A317F2B
MGP_CAROLIEiJ_T0061455	-	633	-	MGP_CAROLIEiJ_P0061455	93 (aa)	-	-
MGP_CAROLIEiJ_T0061456	-	2870	XM_021159883	MGP_CAROLIEiJ_P0061456	886 (aa)	XP_021015542	UPI000A31940F
MGP_CAROLIEiJ_T0061457	-	447	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0061453	-	434	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0061459	-	801	-	MGP_CAROLIEiJ_P0061459	155 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0025810's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0025810's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0025810	Rad54b	75	45.133	MGP_CAROLIEiJ_G0026325	Rad54l	84	45.133
MGP_CAROLIEiJ_G0025810	Rad54b	61	30.066	MGP_CAROLIEiJ_G0018635	-	85	30.066
MGP_CAROLIEiJ_G0025810	Rad54b	57	33.333	MGP_CAROLIEiJ_G0033034	Smarca1	61	32.319

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0025810	Rad54b	81	83.149	ENSG00000265817	FSBP	99	83.149	Homo_sapiens
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.548	ENSG00000197275	RAD54B	99	78.548	Homo_sapiens
MGP_CAROLIEiJ_G0025810	Rad54b	100	79.189	ENSAMEG00000005834	-	100	79.189	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0025810	Rad54b	99	55.172	ENSACIG00000013005	rad54b	99	55.172	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0025810	Rad54b	99	54.234	ENSAOCG00000008523	rad54b	99	54.399	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0025810	Rad54b	99	55.581	ENSAPEG00000001673	rad54b	99	55.581	Amphiprion_percula
MGP_CAROLIEiJ_G0025810	Rad54b	99	55.407	ENSATEG00000001527	rad54b	99	55.407	Anabas_testudineus
MGP_CAROLIEiJ_G0025810	Rad54b	99	66.412	ENSAPLG00000014366	-	99	66.412	Anas_platyrhynchos
MGP_CAROLIEiJ_G0025810	Rad54b	90	68.867	ENSACAG00000003671	-	99	68.867	Anolis_carolinensis
MGP_CAROLIEiJ_G0025810	Rad54b	73	82.562	ENSANAG00000019528	-	99	82.562	Aotus_nancymaae
MGP_CAROLIEiJ_G0025810	Rad54b	99	55.543	ENSACLG00000007826	rad54b	99	55.866	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0025810	Rad54b	87	57.452	ENSAMXG00000039985	rad54b	94	57.197	Astyanax_mexicanus
MGP_CAROLIEiJ_G0025810	Rad54b	100	76.206	ENSBTAG00000000632	RAD54B	100	76.206	Bos_taurus
MGP_CAROLIEiJ_G0025810	Rad54b	81	34.400	WBGene00013792	Y116A8C.13	83	34.492	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0025810	Rad54b	99	77.558	ENSCJAG00000000080	-	99	81.768	Callithrix_jacchus
MGP_CAROLIEiJ_G0025810	Rad54b	100	77.218	ENSCAFG00000009179	RAD54B	99	77.218	Canis_familiaris
MGP_CAROLIEiJ_G0025810	Rad54b	100	76.999	ENSCAFG00020012084	-	99	76.999	Canis_lupus_dingo
MGP_CAROLIEiJ_G0025810	Rad54b	100	76.206	ENSCHIG00000008230	-	100	76.206	Capra_hircus
MGP_CAROLIEiJ_G0025810	Rad54b	100	79.605	ENSTSYG00000013234	-	100	79.605	Carlito_syrichta
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.619	ENSCPOG00000011643	-	99	78.619	Cavia_porcellus
MGP_CAROLIEiJ_G0025810	Rad54b	100	77.692	ENSCCAG00000011754	-	99	81.517	Cebus_capucinus
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.328	ENSCATG00000030661	-	99	83.011	Cercocebus_atys
MGP_CAROLIEiJ_G0025810	Rad54b	99	81.081	ENSCLAG00000010476	-	99	81.081	Chinchilla_lanigera
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.218	ENSCSAG00000012712	-	99	78.218	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0025810	Rad54b	99	66.266	ENSCPBG00000003204	-	99	66.785	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.658	ENSCANG00000017939	-	99	83.287	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0025810	Rad54b	100	85.746	ENSCGRG00001020184	Rad54b	100	85.746	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0025810	Rad54b	100	84.305	ENSCGRG00000016752	Rad54b	100	84.305	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0025810	Rad54b	99	55.942	ENSCSEG00000001601	rad54b	99	55.942	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0025810	Rad54b	99	56.637	ENSCVAG00000009200	rad54b	99	56.637	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0025810	Rad54b	100	53.208	ENSDARG00000092134	rad54b	100	60.092	Danio_rerio
MGP_CAROLIEiJ_G0025810	Rad54b	99	76.368	ENSDNOG00000015535	-	99	76.368	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0025810	Rad54b	100	79.686	ENSDORG00000002492	Rad54b	100	79.910	Dipodomys_ordii
MGP_CAROLIEiJ_G0025810	Rad54b	86	76.373	ENSETEG00000010605	-	100	76.373	Echinops_telfairi
MGP_CAROLIEiJ_G0025810	Rad54b	100	46.875	ENSEBUG00000009104	rad54b	99	46.781	Eptatretus_burgeri
MGP_CAROLIEiJ_G0025810	Rad54b	97	77.324	ENSEASG00005004021	-	99	77.324	Equus_asinus_asinus
MGP_CAROLIEiJ_G0025810	Rad54b	100	77.387	ENSECAG00000021949	-	99	77.387	Equus_caballus
MGP_CAROLIEiJ_G0025810	Rad54b	81	80.124	ENSEEUG00000008056	-	80	80.124	Erinaceus_europaeus
MGP_CAROLIEiJ_G0025810	Rad54b	99	52.598	ENSELUG00000009287	rad54b	99	52.598	Esox_lucius
MGP_CAROLIEiJ_G0025810	Rad54b	100	78.751	ENSFCAG00000015513	-	100	83.081	Felis_catus
MGP_CAROLIEiJ_G0025810	Rad54b	99	65.027	ENSFALG00000005467	-	99	65.027	Ficedula_albicollis
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.721	ENSFDAG00000020541	-	99	78.721	Fukomys_damarensis
MGP_CAROLIEiJ_G0025810	Rad54b	88	58.281	ENSFHEG00000014382	rad54b	87	58.531	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0025810	Rad54b	88	57.161	ENSGMOG00000014774	rad54b	98	57.161	Gadus_morhua
MGP_CAROLIEiJ_G0025810	Rad54b	99	65.899	ENSGALG00000043597	RAD54B	99	65.899	Gallus_gallus
MGP_CAROLIEiJ_G0025810	Rad54b	99	55.028	ENSGAFG00000007901	rad54b	99	55.028	Gambusia_affinis
MGP_CAROLIEiJ_G0025810	Rad54b	99	54.113	ENSGACG00000009128	rad54b	100	54.113	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0025810	Rad54b	99	66.050	ENSGAGG00000018747	-	99	66.050	Gopherus_agassizii
MGP_CAROLIEiJ_G0025810	Rad54b	100	77.961	ENSGGOG00000023516	-	100	77.961	Gorilla_gorilla
MGP_CAROLIEiJ_G0025810	Rad54b	99	53.723	ENSHBUG00000016017	rad54b	99	53.723	Haplochromis_burtoni
MGP_CAROLIEiJ_G0025810	Rad54b	100	77.729	ENSHGLG00000008263	RAD54B	99	77.729	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0025810	Rad54b	100	76.898	ENSHGLG00100008108	-	99	76.898	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0025810	Rad54b	99	54.656	ENSHCOG00000004764	rad54b	98	56.382	Hippocampus_comes
MGP_CAROLIEiJ_G0025810	Rad54b	99	51.746	ENSIPUG00000018531	rad54b	99	51.746	Ictalurus_punctatus
MGP_CAROLIEiJ_G0025810	Rad54b	99	77.987	ENSSTOG00000010791	-	99	77.987	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0025810	Rad54b	100	79.254	ENSJJAG00000010314	Rad54b	100	79.254	Jaculus_jaculus
MGP_CAROLIEiJ_G0025810	Rad54b	99	55.257	ENSKMAG00000004744	rad54b	99	55.257	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0025810	Rad54b	83	68.358	ENSLACG00000000859	-	100	68.358	Latimeria_chalumnae
MGP_CAROLIEiJ_G0025810	Rad54b	99	57.374	ENSLOCG00000010100	rad54b	93	63.752	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0025810	Rad54b	91	80.346	ENSLAFG00000015315	-	100	80.346	Loxodonta_africana
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.218	ENSMFAG00000031629	-	99	82.873	Macaca_fascicularis
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.218	ENSMMUG00000005659	-	99	78.218	Macaca_mulatta
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.304	ENSMNEG00000016408	-	99	78.304	Macaca_nemestrina
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.218	ENSMLEG00000006946	-	99	78.218	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0025810	Rad54b	99	56.160	ENSMAMG00000012269	rad54b	99	55.960	Mastacembelus_armatus
MGP_CAROLIEiJ_G0025810	Rad54b	99	53.936	ENSMZEG00005005281	rad54b	97	58.242	Maylandia_zebra
MGP_CAROLIEiJ_G0025810	Rad54b	99	65.827	ENSMGAG00000012024	-	99	65.827	Meleagris_gallopavo
MGP_CAROLIEiJ_G0025810	Rad54b	100	85.297	ENSMAUG00000013586	Rad54b	100	85.297	Mesocricetus_auratus
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.900	ENSMICG00000000754	-	99	78.900	Microcebus_murinus
MGP_CAROLIEiJ_G0025810	Rad54b	100	85.746	ENSMOCG00000020035	Rad54b	99	85.746	Microtus_ochrogaster
MGP_CAROLIEiJ_G0025810	Rad54b	99	54.264	ENSMMOG00000003394	rad54b	99	54.264	Mola_mola
MGP_CAROLIEiJ_G0025810	Rad54b	90	75.373	ENSMODG00000007343	-	99	75.373	Monodelphis_domestica
MGP_CAROLIEiJ_G0025810	Rad54b	72	60.155	ENSMALG00000001520	rad54b	99	60.155	Monopterus_albus
MGP_CAROLIEiJ_G0025810	Rad54b	100	96.953	ENSMUSG00000078773	Rad54b	100	96.953	Mus_musculus
MGP_CAROLIEiJ_G0025810	Rad54b	100	96.388	MGP_PahariEiJ_G0023933	Rad54b	100	96.388	Mus_pahari
MGP_CAROLIEiJ_G0025810	Rad54b	100	97.178	MGP_SPRETEiJ_G0026758	Rad54b	100	97.178	Mus_spretus
MGP_CAROLIEiJ_G0025810	Rad54b	91	82.099	ENSMPUG00000008878	-	100	82.099	Mustela_putorius_furo
MGP_CAROLIEiJ_G0025810	Rad54b	100	76.232	ENSMLUG00000008953	-	100	76.232	Myotis_lucifugus
MGP_CAROLIEiJ_G0025810	Rad54b	100	84.257	ENSNGAG00000017537	Rad54b	100	84.257	Nannospalax_galili
MGP_CAROLIEiJ_G0025810	Rad54b	99	55.978	ENSNBRG00000013394	rad54b	99	55.978	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.658	ENSNLEG00000003062	-	99	82.873	Nomascus_leucogenys
MGP_CAROLIEiJ_G0025810	Rad54b	73	71.138	ENSMEUG00000012426	-	70	71.138	Notamacropus_eugenii
MGP_CAROLIEiJ_G0025810	Rad54b	100	77.434	ENSODEG00000019564	-	100	77.434	Octodon_degus
MGP_CAROLIEiJ_G0025810	Rad54b	91	75.371	ENSODEG00000002650	-	96	82.154	Octodon_degus
MGP_CAROLIEiJ_G0025810	Rad54b	99	54.203	ENSONIG00000006067	rad54b	99	54.203	Oreochromis_niloticus
MGP_CAROLIEiJ_G0025810	Rad54b	84	72.377	ENSOANG00000011348	-	100	72.377	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0025810	Rad54b	100	77.717	ENSOCUG00000016478	-	99	77.717	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0025810	Rad54b	99	54.380	ENSORLG00000008918	rad54b	99	62.733	Oryzias_latipes
MGP_CAROLIEiJ_G0025810	Rad54b	72	62.733	ENSORLG00020012171	rad54b	99	62.733	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0025810	Rad54b	99	54.234	ENSORLG00015018536	rad54b	99	54.234	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0025810	Rad54b	85	59.897	ENSOMEG00000004345	rad54b	99	59.897	Oryzias_melastigma
MGP_CAROLIEiJ_G0025810	Rad54b	99	77.607	ENSOGAG00000007854	-	99	77.607	Otolemur_garnettii
MGP_CAROLIEiJ_G0025810	Rad54b	91	80.566	ENSOARG00000007691	-	100	80.566	Ovis_aries
MGP_CAROLIEiJ_G0025810	Rad54b	99	77.008	ENSPPAG00000029572	-	99	77.008	Pan_paniscus
MGP_CAROLIEiJ_G0025810	Rad54b	100	78.970	ENSPPRG00000007571	-	100	83.081	Panthera_pardus
MGP_CAROLIEiJ_G0025810	Rad54b	81	83.081	ENSPTIG00000012670	-	100	83.081	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.438	ENSPTRG00000020427	-	99	83.149	Pan_troglodytes
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.328	ENSPANG00000019566	-	99	78.328	Papio_anubis
MGP_CAROLIEiJ_G0025810	Rad54b	99	57.361	ENSPKIG00000014974	rad54b	99	57.361	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0025810	Rad54b	99	64.340	ENSPSIG00000002383	-	98	69.202	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0025810	Rad54b	100	85.859	ENSPEMG00000012133	Rad54b	100	85.859	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0025810	Rad54b	88	57.557	ENSPMAG00000002916	rad54b	98	57.935	Petromyzon_marinus
MGP_CAROLIEiJ_G0025810	Rad54b	90	76.185	ENSPCIG00000020151	-	94	76.030	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0025810	Rad54b	99	53.943	ENSPFOG00000023411	rad54b	99	53.733	Poecilia_formosa
MGP_CAROLIEiJ_G0025810	Rad54b	99	54.040	ENSPLAG00000010430	rad54b	99	53.830	Poecilia_latipinna
MGP_CAROLIEiJ_G0025810	Rad54b	99	55.407	ENSPMEG00000016873	rad54b	99	55.407	Poecilia_mexicana
MGP_CAROLIEiJ_G0025810	Rad54b	99	56.402	ENSPREG00000018443	rad54b	99	56.181	Poecilia_reticulata
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.218	ENSPPYG00000018750	-	99	78.218	Pongo_abelii
MGP_CAROLIEiJ_G0025810	Rad54b	99	79.693	ENSPCOG00000026845	-	99	83.884	Propithecus_coquereli
MGP_CAROLIEiJ_G0025810	Rad54b	83	81.781	ENSPVAG00000000261	-	86	81.781	Pteropus_vampyrus
MGP_CAROLIEiJ_G0025810	Rad54b	87	58.981	ENSPNYG00000018303	rad54b	95	58.981	Pundamilia_nyererei
MGP_CAROLIEiJ_G0025810	Rad54b	99	54.031	ENSPNAG00000000295	rad54b	99	54.031	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0025810	Rad54b	100	89.089	ENSRNOG00000039949	Rad54b	100	89.089	Rattus_norvegicus
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.108	ENSRBIG00000020419	-	99	78.108	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0025810	Rad54b	99	78.108	ENSRROG00000039897	-	99	78.108	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0025810	Rad54b	91	34.350	YBR073W	RDH54	78	36.375	Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0025810	Rad54b	100	77.193	ENSSBOG00000028501	-	100	77.193	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0025810	Rad54b	99	70.472	ENSSHAG00000017038	-	99	70.472	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0025810	Rad54b	64	65.088	ENSSFOG00015008483	rad54b	88	64.737	Scleropages_formosus
MGP_CAROLIEiJ_G0025810	Rad54b	99	55.331	ENSSMAG00000018659	rad54b	99	55.269	Scophthalmus_maximus
MGP_CAROLIEiJ_G0025810	Rad54b	97	54.243	ENSSDUG00000001122	rad54b	97	54.565	Seriola_dumerili
MGP_CAROLIEiJ_G0025810	Rad54b	99	54.008	ENSSLDG00000013787	rad54b	99	54.555	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0025810	Rad54b	99	66.368	ENSSPUG00000016497	-	99	66.368	Sphenodon_punctatus
MGP_CAROLIEiJ_G0025810	Rad54b	99	55.605	ENSSPAG00000012800	rad54b	99	55.605	Stegastes_partitus
MGP_CAROLIEiJ_G0025810	Rad54b	100	77.655	ENSSSCG00000006101	-	99	82.228	Sus_scrofa
MGP_CAROLIEiJ_G0025810	Rad54b	99	64.513	ENSTGUG00000011880	-	99	64.513	Taeniopygia_guttata
MGP_CAROLIEiJ_G0025810	Rad54b	99	53.178	ENSTRUG00000010015	rad54b	99	53.178	Takifugu_rubripes
MGP_CAROLIEiJ_G0025810	Rad54b	100	74.561	ENSTTRG00000006312	-	100	74.561	Tursiops_truncatus
MGP_CAROLIEiJ_G0025810	Rad54b	100	78.642	ENSUMAG00000016401	-	100	78.642	Ursus_maritimus
MGP_CAROLIEiJ_G0025810	Rad54b	100	77.143	ENSVPAG00000003157	-	100	77.143	Vicugna_pacos
MGP_CAROLIEiJ_G0025810	Rad54b	99	53.244	ENSXETG00000025924	rad54b	99	57.553	Xenopus_tropicalis
MGP_CAROLIEiJ_G0025810	Rad54b	99	55.211	ENSXMAG00000013141	rad54b	99	55.211	Xiphophorus_maculatus