EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0025967 (Gene tree)
Gene ID: 110292670
Gene Symbol: Polr1e
Alias: 53kDa|D030019D19Rik|Paf53|Praf1
Full Name: RNA polymerase I subunit E
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 19362 bases
Position: chr4:39084272-39103633
Accession: 110292670
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0062180	RNA_pol_I_A49	PF06870.12	2e-100	1	1
MGP_CAROLIEiJ_P0062176	RNA_pol_I_A49	PF06870.12	2.5e-100	1	1
MGP_CAROLIEiJ_P0062177	RNA_pol_I_A49	PF06870.12	4.9e-96	1	1
MGP_CAROLIEiJ_P0062178	RNA_pol_I_A49	PF06870.12	3.7e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0062176	-	3181	-	MGP_CAROLIEiJ_P0062176	433 (aa)	XP_021015816	UPI000A317F58
MGP_CAROLIEiJ_T0062177	-	1736	-	MGP_CAROLIEiJ_P0062177	481 (aa)	-	-
MGP_CAROLIEiJ_T0062182	-	660	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0062181	-	432	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0062180	-	1232	-	MGP_CAROLIEiJ_P0062180	405 (aa)	-	-
MGP_CAROLIEiJ_T0062178	-	1463	-	MGP_CAROLIEiJ_P0062178	392 (aa)	-	-
MGP_CAROLIEiJ_T0062179	-	636	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0025967's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0025967's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0025967	Polr1e	99	77.171	ENSG00000137054	POLR1E	99	76.867	Homo_sapiens
MGP_CAROLIEiJ_G0025967	Polr1e	98	40.452	ENSAPOG00000012452	polr1e	94	56.471	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0025967	Polr1e	100	70.539	ENSAMEG00000010193	POLR1E	100	70.539	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0025967	Polr1e	97	41.878	ENSACIG00000009884	polr1e	99	53.488	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0025967	Polr1e	98	43.719	ENSAOCG00000005665	polr1e	99	43.961	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0025967	Polr1e	98	43.467	ENSAPEG00000020581	polr1e	99	43.720	Amphiprion_percula
MGP_CAROLIEiJ_G0025967	Polr1e	97	44.949	ENSATEG00000020609	polr1e	99	44.686	Anabas_testudineus
MGP_CAROLIEiJ_G0025967	Polr1e	80	55.729	ENSAPLG00000010340	POLR1E	100	55.729	Anas_platyrhynchos
MGP_CAROLIEiJ_G0025967	Polr1e	99	77.612	ENSANAG00000038046	POLR1E	99	77.108	Aotus_nancymaae
MGP_CAROLIEiJ_G0025967	Polr1e	98	41.960	ENSACLG00000013685	polr1e	98	42.029	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0025967	Polr1e	97	42.065	ENSAMXG00000018181	polr1e	98	41.707	Astyanax_mexicanus
MGP_CAROLIEiJ_G0025967	Polr1e	97	80.253	ENSBTAG00000012243	POLR1E	99	79.327	Bos_taurus
MGP_CAROLIEiJ_G0025967	Polr1e	99	71.322	ENSCJAG00000010512	POLR1E	93	76.550	Callithrix_jacchus
MGP_CAROLIEiJ_G0025967	Polr1e	99	78.607	ENSCAFG00000002377	POLR1E	99	78.554	Canis_familiaris
MGP_CAROLIEiJ_G0025967	Polr1e	97	79.389	ENSCAFG00020017851	POLR1E	99	78.795	Canis_lupus_dingo
MGP_CAROLIEiJ_G0025967	Polr1e	97	78.734	ENSCHIG00000019479	POLR1E	99	77.831	Capra_hircus
MGP_CAROLIEiJ_G0025967	Polr1e	97	77.608	ENSTSYG00000002075	POLR1E	99	77.218	Carlito_syrichta
MGP_CAROLIEiJ_G0025967	Polr1e	71	81.250	ENSCAPG00000015653	POLR1E	99	81.250	Cavia_aperea
MGP_CAROLIEiJ_G0025967	Polr1e	97	82.697	ENSCPOG00000009965	POLR1E	99	81.687	Cavia_porcellus
MGP_CAROLIEiJ_G0025967	Polr1e	97	69.898	ENSCCAG00000029460	POLR1E	97	76.190	Cebus_capucinus
MGP_CAROLIEiJ_G0025967	Polr1e	97	77.099	ENSCATG00000031732	POLR1E	99	80.180	Cercocebus_atys
MGP_CAROLIEiJ_G0025967	Polr1e	94	82.114	ENSCLAG00000012701	POLR1E	97	82.114	Chinchilla_lanigera
MGP_CAROLIEiJ_G0025967	Polr1e	97	76.845	ENSCSAG00000010782	POLR1E	99	76.145	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0025967	Polr1e	100	68.382	ENSCHOG00000013024	POLR1E	78	78.246	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0025967	Polr1e	97	64.031	ENSCPBG00000006923	POLR1E	99	63.171	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0025967	Polr1e	99	75.871	ENSCANG00000036112	POLR1E	99	79.464	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0025967	Polr1e	100	86.406	ENSCGRG00001006197	Polr1e	100	86.406	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0025967	Polr1e	100	85.945	ENSCGRG00000006430	Polr1e	100	85.945	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0025967	Polr1e	97	41.117	ENSCSEG00000005121	polr1e	96	41.117	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0025967	Polr1e	97	41.414	ENSCVAG00000019759	polr1e	99	41.063	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0025967	Polr1e	94	44.010	ENSDARG00000006434	polr1e	99	42.651	Danio_rerio
MGP_CAROLIEiJ_G0025967	Polr1e	97	69.231	ENSDNOG00000010257	POLR1E	98	70.259	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0025967	Polr1e	87	74.930	ENSETEG00000018204	POLR1E	99	74.930	Echinops_telfairi
MGP_CAROLIEiJ_G0025967	Polr1e	56	36.842	ENSEBUG00000010635	-	81	36.842	Eptatretus_burgeri
MGP_CAROLIEiJ_G0025967	Polr1e	97	78.626	ENSEASG00005000675	POLR1E	99	78.313	Equus_asinus_asinus
MGP_CAROLIEiJ_G0025967	Polr1e	97	78.626	ENSECAG00000014669	POLR1E	99	78.313	Equus_caballus
MGP_CAROLIEiJ_G0025967	Polr1e	99	67.246	ENSEEUG00000011928	POLR1E	79	82.022	Erinaceus_europaeus
MGP_CAROLIEiJ_G0025967	Polr1e	97	45.088	ENSELUG00000008150	polr1e	98	44.068	Esox_lucius
MGP_CAROLIEiJ_G0025967	Polr1e	99	75.921	ENSFCAG00000013081	POLR1E	99	76.867	Felis_catus
MGP_CAROLIEiJ_G0025967	Polr1e	97	56.853	ENSFALG00000012950	POLR1E	99	56.853	Ficedula_albicollis
MGP_CAROLIEiJ_G0025967	Polr1e	97	83.461	ENSFDAG00000016917	POLR1E	99	82.651	Fukomys_damarensis
MGP_CAROLIEiJ_G0025967	Polr1e	97	42.462	ENSFHEG00000009801	polr1e	99	42.067	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0025967	Polr1e	93	38.701	ENSGMOG00000003336	POLR1E	93	49.524	Gadus_morhua
MGP_CAROLIEiJ_G0025967	Polr1e	98	59.241	ENSGALG00000005395	POLR1E	100	58.354	Gallus_gallus
MGP_CAROLIEiJ_G0025967	Polr1e	97	41.919	ENSGAFG00000004850	polr1e	99	41.546	Gambusia_affinis
MGP_CAROLIEiJ_G0025967	Polr1e	98	40.247	ENSGACG00000016087	polr1e	99	40.521	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0025967	Polr1e	97	56.378	ENSGAGG00000001659	POLR1E	98	63.918	Gopherus_agassizii
MGP_CAROLIEiJ_G0025967	Polr1e	99	77.171	ENSGGOG00000001882	POLR1E	99	80.180	Gorilla_gorilla
MGP_CAROLIEiJ_G0025967	Polr1e	98	42.211	ENSHBUG00000002559	polr1e	98	42.271	Haplochromis_burtoni
MGP_CAROLIEiJ_G0025967	Polr1e	97	81.934	ENSHGLG00000002036	POLR1E	99	80.964	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0025967	Polr1e	97	82.188	ENSHGLG00100012784	POLR1E	99	81.205	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0025967	Polr1e	97	40.759	ENSHCOG00000002774	polr1e	99	40.821	Hippocampus_comes
MGP_CAROLIEiJ_G0025967	Polr1e	97	42.714	ENSIPUG00000003019	polr1e	99	42.271	Ictalurus_punctatus
MGP_CAROLIEiJ_G0025967	Polr1e	97	79.389	ENSSTOG00000009810	POLR1E	99	79.036	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0025967	Polr1e	97	81.934	ENSJJAG00000020731	Polr1e	99	79.215	Jaculus_jaculus
MGP_CAROLIEiJ_G0025967	Polr1e	97	40.554	ENSKMAG00000000046	polr1e	99	40.723	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0025967	Polr1e	98	44.557	ENSLBEG00000003104	polr1e	99	44.578	Labrus_bergylta
MGP_CAROLIEiJ_G0025967	Polr1e	88	62.327	ENSLACG00000003416	POLR1E	99	62.327	Latimeria_chalumnae
MGP_CAROLIEiJ_G0025967	Polr1e	97	50.127	ENSLOCG00000012859	polr1e	99	49.161	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0025967	Polr1e	97	78.626	ENSLAFG00000012831	POLR1E	99	77.619	Loxodonta_africana
MGP_CAROLIEiJ_G0025967	Polr1e	97	77.099	ENSMFAG00000045465	POLR1E	99	80.180	Macaca_fascicularis
MGP_CAROLIEiJ_G0025967	Polr1e	97	77.099	ENSMMUG00000017892	POLR1E	99	80.180	Macaca_mulatta
MGP_CAROLIEiJ_G0025967	Polr1e	97	70.471	ENSMNEG00000040283	POLR1E	99	76.106	Macaca_nemestrina
MGP_CAROLIEiJ_G0025967	Polr1e	97	77.099	ENSMLEG00000031135	POLR1E	99	80.180	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0025967	Polr1e	97	43.073	ENSMAMG00000001260	polr1e	99	42.344	Mastacembelus_armatus
MGP_CAROLIEiJ_G0025967	Polr1e	98	42.211	ENSMZEG00005021536	polr1e	98	42.271	Maylandia_zebra
MGP_CAROLIEiJ_G0025967	Polr1e	99	85.912	ENSMAUG00000021044	Polr1e	99	85.912	Mesocricetus_auratus
MGP_CAROLIEiJ_G0025967	Polr1e	99	77.114	ENSMICG00000003673	POLR1E	99	77.108	Microcebus_murinus
MGP_CAROLIEiJ_G0025967	Polr1e	100	85.023	ENSMOCG00000012920	Polr1e	100	85.023	Microtus_ochrogaster
MGP_CAROLIEiJ_G0025967	Polr1e	97	43.829	ENSMMOG00000007391	polr1e	99	42.788	Mola_mola
MGP_CAROLIEiJ_G0025967	Polr1e	93	68.074	ENSMODG00000002884	POLR1E	97	67.677	Monodelphis_domestica
MGP_CAROLIEiJ_G0025967	Polr1e	97	43.182	ENSMALG00000002665	polr1e	98	42.823	Monopterus_albus
MGP_CAROLIEiJ_G0025967	Polr1e	100	95.853	ENSMUSG00000028318	Polr1e	100	95.853	Mus_musculus
MGP_CAROLIEiJ_G0025967	Polr1e	100	91.603	MGP_PahariEiJ_G0024114	Polr1e	100	91.603	Mus_pahari
MGP_CAROLIEiJ_G0025967	Polr1e	100	95.853	MGP_SPRETEiJ_G0026930	Polr1e	100	95.853	Mus_spretus
MGP_CAROLIEiJ_G0025967	Polr1e	97	72.340	ENSMPUG00000006040	POLR1E	99	72.340	Mustela_putorius_furo
MGP_CAROLIEiJ_G0025967	Polr1e	97	77.863	ENSMLUG00000012688	POLR1E	98	76.581	Myotis_lucifugus
MGP_CAROLIEiJ_G0025967	Polr1e	99	83.141	ENSNGAG00000002520	Polr1e	99	83.141	Nannospalax_galili
MGP_CAROLIEiJ_G0025967	Polr1e	98	42.211	ENSNBRG00000016822	polr1e	98	42.271	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0025967	Polr1e	99	77.363	ENSNLEG00000003616	POLR1E	99	81.081	Nomascus_leucogenys
MGP_CAROLIEiJ_G0025967	Polr1e	75	73.750	ENSMEUG00000015372	-	80	73.750	Notamacropus_eugenii
MGP_CAROLIEiJ_G0025967	Polr1e	88	67.131	ENSOPRG00000014206	POLR1E	89	84.000	Ochotona_princeps
MGP_CAROLIEiJ_G0025967	Polr1e	97	83.715	ENSODEG00000014565	POLR1E	100	80.465	Octodon_degus
MGP_CAROLIEiJ_G0025967	Polr1e	98	42.500	ENSONIG00000008921	polr1e	98	42.512	Oreochromis_niloticus
MGP_CAROLIEiJ_G0025967	Polr1e	97	79.135	ENSOCUG00000024773	POLR1E	99	78.795	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0025967	Polr1e	98	41.457	ENSORLG00000005143	polr1e	99	41.063	Oryzias_latipes
MGP_CAROLIEiJ_G0025967	Polr1e	95	41.237	ENSORLG00020007271	polr1e	99	49.425	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0025967	Polr1e	98	41.206	ENSORLG00015000137	polr1e	99	40.821	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0025967	Polr1e	98	40.704	ENSOMEG00000013264	polr1e	99	40.618	Oryzias_melastigma
MGP_CAROLIEiJ_G0025967	Polr1e	97	78.880	ENSOGAG00000012981	POLR1E	98	77.251	Otolemur_garnettii
MGP_CAROLIEiJ_G0025967	Polr1e	97	78.987	ENSOARG00000011465	POLR1E	99	75.694	Ovis_aries
MGP_CAROLIEiJ_G0025967	Polr1e	99	77.171	ENSPPAG00000034566	POLR1E	99	80.180	Pan_paniscus
MGP_CAROLIEiJ_G0025967	Polr1e	97	76.845	ENSPPRG00000005649	POLR1E	99	76.627	Panthera_pardus
MGP_CAROLIEiJ_G0025967	Polr1e	97	76.845	ENSPTIG00000009774	POLR1E	99	76.627	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0025967	Polr1e	99	77.171	ENSPTRG00000020944	POLR1E	99	80.180	Pan_troglodytes
MGP_CAROLIEiJ_G0025967	Polr1e	97	77.099	ENSPANG00000025563	POLR1E	99	80.180	Papio_anubis
MGP_CAROLIEiJ_G0025967	Polr1e	97	46.231	ENSPKIG00000003562	polr1e	99	45.324	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0025967	Polr1e	99	58.750	ENSPSIG00000003274	POLR1E	93	58.750	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0025967	Polr1e	98	42.963	ENSPMGG00000024169	polr1e	97	42.963	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0025967	Polr1e	100	85.253	ENSPEMG00000019151	-	100	85.253	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0025967	Polr1e	100	70.276	ENSPEMG00000022300	-	100	70.276	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0025967	Polr1e	93	68.602	ENSPCIG00000014798	POLR1E	97	68.434	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0025967	Polr1e	97	40.855	ENSPFOG00000019627	polr1e	100	40.583	Poecilia_formosa
MGP_CAROLIEiJ_G0025967	Polr1e	97	42.929	ENSPLAG00000022679	polr1e	99	42.512	Poecilia_latipinna
MGP_CAROLIEiJ_G0025967	Polr1e	88	43.056	ENSPMEG00000022123	polr1e	93	43.056	Poecilia_mexicana
MGP_CAROLIEiJ_G0025967	Polr1e	97	42.677	ENSPREG00000009470	polr1e	99	42.271	Poecilia_reticulata
MGP_CAROLIEiJ_G0025967	Polr1e	97	76.590	ENSPPYG00000019061	POLR1E	99	75.904	Pongo_abelii
MGP_CAROLIEiJ_G0025967	Polr1e	58	76.271	ENSPCAG00000004891	POLR1E	77	76.271	Procavia_capensis
MGP_CAROLIEiJ_G0025967	Polr1e	99	76.238	ENSPCOG00000027448	POLR1E	99	77.349	Propithecus_coquereli
MGP_CAROLIEiJ_G0025967	Polr1e	99	79.104	ENSPVAG00000007940	POLR1E	85	79.602	Pteropus_vampyrus
MGP_CAROLIEiJ_G0025967	Polr1e	98	41.960	ENSPNYG00000001032	polr1e	98	42.029	Pundamilia_nyererei
MGP_CAROLIEiJ_G0025967	Polr1e	97	42.025	ENSPNAG00000006987	polr1e	95	42.424	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0025967	Polr1e	100	88.710	ENSRNOG00000012664	Polr1e	100	88.710	Rattus_norvegicus
MGP_CAROLIEiJ_G0025967	Polr1e	99	76.559	ENSRBIG00000034214	POLR1E	99	76.316	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0025967	Polr1e	97	76.590	ENSRROG00000031986	POLR1E	99	80.180	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0025967	Polr1e	97	77.354	ENSSBOG00000021415	POLR1E	99	76.386	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0025967	Polr1e	88	67.409	ENSSHAG00000016084	POLR1E	100	67.409	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0025967	Polr1e	97	46.348	ENSSFOG00015002293	polr1e	98	45.610	Scleropages_formosus
MGP_CAROLIEiJ_G0025967	Polr1e	97	45.316	ENSSMAG00000011672	polr1e	91	45.700	Scophthalmus_maximus
MGP_CAROLIEiJ_G0025967	Polr1e	98	43.860	ENSSDUG00000022279	polr1e	97	44.499	Seriola_dumerili
MGP_CAROLIEiJ_G0025967	Polr1e	98	43.860	ENSSLDG00000024918	polr1e	97	44.499	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0025967	Polr1e	68	65.086	ENSSARG00000009810	-	69	65.086	Sorex_araneus
MGP_CAROLIEiJ_G0025967	Polr1e	97	63.868	ENSSPUG00000009499	POLR1E	99	62.379	Sphenodon_punctatus
MGP_CAROLIEiJ_G0025967	Polr1e	98	44.472	ENSSPAG00000021240	polr1e	99	44.686	Stegastes_partitus
MGP_CAROLIEiJ_G0025967	Polr1e	98	80.051	ENSSSCG00000005347	POLR1E	99	79.087	Sus_scrofa
MGP_CAROLIEiJ_G0025967	Polr1e	97	48.533	ENSTGUG00000007169	POLR1E	100	51.230	Taeniopygia_guttata
MGP_CAROLIEiJ_G0025967	Polr1e	97	42.105	ENSTRUG00000020779	polr1e	99	41.885	Takifugu_rubripes
MGP_CAROLIEiJ_G0025967	Polr1e	97	42.677	ENSTNIG00000017812	polr1e	99	42.271	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0025967	Polr1e	99	79.361	ENSTBEG00000013786	POLR1E	87	79.361	Tupaia_belangeri
MGP_CAROLIEiJ_G0025967	Polr1e	99	79.506	ENSTTRG00000008294	POLR1E	86	79.506	Tursiops_truncatus
MGP_CAROLIEiJ_G0025967	Polr1e	97	78.626	ENSUAMG00000012474	POLR1E	99	79.121	Ursus_americanus
MGP_CAROLIEiJ_G0025967	Polr1e	97	78.626	ENSUMAG00000011496	POLR1E	99	78.313	Ursus_maritimus
MGP_CAROLIEiJ_G0025967	Polr1e	87	73.900	ENSVPAG00000009048	POLR1E	84	72.676	Vicugna_pacos
MGP_CAROLIEiJ_G0025967	Polr1e	97	79.389	ENSVVUG00000019954	POLR1E	99	78.554	Vulpes_vulpes
MGP_CAROLIEiJ_G0025967	Polr1e	97	48.744	ENSXETG00000006533	polr1e	99	48.184	Xenopus_tropicalis
MGP_CAROLIEiJ_G0025967	Polr1e	97	41.667	ENSXCOG00000013706	polr1e	99	41.304	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0025967	Polr1e	97	43.434	ENSXMAG00000012484	polr1e	99	42.995	Xiphophorus_maculatus