EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0026078 (Gene tree)
Gene ID: 110292329
Gene Symbol: Prpf4
Alias: 1600015H11Rik
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 18591 bases
Position: chr4:56458979-56477569
Accession: 110292329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0062586	PRP4	PF08799.11	8.4e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0062587	-	903	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0062586	-	5276	-	MGP_CAROLIEiJ_P0062586	521 (aa)	XP_021015275	UPI00000281D7

Gene Model

Click here to download MGP_CAROLIEiJ_G0026078's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0026078's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0026078	Prpf4	56	34.694	MGP_CAROLIEiJ_G0021199	Tbl3	71	34.694
MGP_CAROLIEiJ_G0026078	Prpf4	65	30.275	MGP_CAROLIEiJ_G0018818	Utp15	50	30.275
MGP_CAROLIEiJ_G0026078	Prpf4	56	30.625	MGP_CAROLIEiJ_G0032617	Poc1a	82	30.625

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.040	ENSG00000136875	PRPF4	100	99.040	Homo_sapiens
MGP_CAROLIEiJ_G0026078	Prpf4	96	77.615	ENSAPOG00000014132	prpf4	98	77.615	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.232	ENSAMEG00000013048	PRPF4	98	99.232	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0026078	Prpf4	96	76.984	ENSACIG00000005579	prpf4	99	76.984	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0026078	Prpf4	96	77.030	ENSAOCG00000005457	prpf4	99	77.030	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0026078	Prpf4	96	76.832	ENSAPEG00000000776	prpf4	99	76.832	Amphiprion_percula
MGP_CAROLIEiJ_G0026078	Prpf4	96	76.786	ENSATEG00000023013	prpf4	99	76.786	Anabas_testudineus
MGP_CAROLIEiJ_G0026078	Prpf4	100	88.676	ENSAPLG00000006534	PRPF4	97	88.676	Anas_platyrhynchos
MGP_CAROLIEiJ_G0026078	Prpf4	100	89.675	ENSACAG00000015110	PRPF4	100	89.675	Anolis_carolinensis
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.424	ENSANAG00000022464	PRPF4	96	99.424	Aotus_nancymaae
MGP_CAROLIEiJ_G0026078	Prpf4	96	76.786	ENSACLG00000019031	prpf4	99	76.786	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0026078	Prpf4	97	62.380	ENSAMXG00000006756	prpf4	99	73.663	Astyanax_mexicanus
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.464	ENSBTAG00000004571	PRPF4	100	98.464	Bos_taurus
MGP_CAROLIEiJ_G0026078	Prpf4	90	44.093	WBGene00007972	prp-4	96	44.000	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.234	ENSCJAG00000017856	PRPF4	100	99.234	Callithrix_jacchus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.232	ENSCAFG00000003224	PRPF4	97	99.232	Canis_familiaris
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.232	ENSCAFG00020022637	PRPF4	100	99.232	Canis_lupus_dingo
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.659	ENSCHIG00000024648	-	100	98.659	Capra_hircus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.040	ENSTSYG00000010366	PRPF4	100	99.040	Carlito_syrichta
MGP_CAROLIEiJ_G0026078	Prpf4	88	88.305	ENSCAPG00000008935	PRPF4	97	88.305	Cavia_aperea
MGP_CAROLIEiJ_G0026078	Prpf4	100	92.131	ENSCPOG00000014729	-	100	92.131	Cavia_porcellus
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.656	ENSCPOG00000010747	-	100	98.656	Cavia_porcellus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.232	ENSCCAG00000028990	PRPF4	100	99.232	Cebus_capucinus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.040	ENSCATG00000021552	PRPF4	100	99.040	Cercocebus_atys
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.848	ENSCLAG00000013448	PRPF4	100	98.848	Chinchilla_lanigera
MGP_CAROLIEiJ_G0026078	Prpf4	87	95.354	ENSCHOG00000007233	PRPF4	100	95.354	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0026078	Prpf4	99	90.874	ENSCPBG00000019136	PRPF4	74	90.874	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0026078	Prpf4	96	59.055	ENSCING00000001299	-	97	58.416	Ciona_intestinalis
MGP_CAROLIEiJ_G0026078	Prpf4	96	57.341	ENSCSAVG00000009178	-	100	58.658	Ciona_savignyi
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.232	ENSCANG00000003246	PRPF4	100	99.232	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.808	ENSCGRG00001016992	Prpf4	100	99.808	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.808	ENSCGRG00000017560	Prpf4	100	99.808	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0026078	Prpf4	97	75.644	ENSCSEG00000020451	prpf4	99	75.644	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0026078	Prpf4	97	79.802	ENSDARG00000067639	prpf4	99	79.802	Danio_rerio
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.659	ENSDNOG00000013203	PRPF4	100	98.659	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.040	ENSDORG00000026275	Prpf4	100	99.040	Dipodomys_ordii
MGP_CAROLIEiJ_G0026078	Prpf4	87	56.674	FBgn0036733	U4-U6-60K	99	50.547	Drosophila_melanogaster
MGP_CAROLIEiJ_G0026078	Prpf4	100	96.941	ENSETEG00000020389	PRPF4	100	96.941	Echinops_telfairi
MGP_CAROLIEiJ_G0026078	Prpf4	95	73.041	ENSEBUG00000015229	prpf4	86	73.502	Eptatretus_burgeri
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.424	ENSEASG00005022678	PRPF4	100	99.424	Equus_asinus_asinus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.562	ENSECAG00000007072	PRPF4	100	99.424	Equus_caballus
MGP_CAROLIEiJ_G0026078	Prpf4	100	78.166	ENSEEUG00000007480	PRPF4	100	78.166	Erinaceus_europaeus
MGP_CAROLIEiJ_G0026078	Prpf4	97	80.792	ENSELUG00000007510	prpf4	99	80.792	Esox_lucius
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.234	ENSFCAG00000005514	PRPF4	100	99.234	Felis_catus
MGP_CAROLIEiJ_G0026078	Prpf4	98	88.117	ENSFALG00000005423	PRPF4	90	85.376	Ficedula_albicollis
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.656	ENSFDAG00000005839	PRPF4	100	98.656	Fukomys_damarensis
MGP_CAROLIEiJ_G0026078	Prpf4	96	76.190	ENSFHEG00000001300	prpf4	99	76.190	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0026078	Prpf4	98	89.824	ENSGALG00000008857	PRPF4	96	89.147	Gallus_gallus
MGP_CAROLIEiJ_G0026078	Prpf4	65	71.176	ENSGAFG00000012164	prpf4	70	71.176	Gambusia_affinis
MGP_CAROLIEiJ_G0026078	Prpf4	96	69.841	ENSGACG00000015476	prpf4	99	69.048	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0026078	Prpf4	99	91.068	ENSGAGG00000025029	PRPF4	95	91.068	Gopherus_agassizii
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.040	ENSGGOG00000006943	PRPF4	100	99.040	Gorilla_gorilla
MGP_CAROLIEiJ_G0026078	Prpf4	96	76.587	ENSHBUG00000000562	prpf4	99	76.587	Haplochromis_burtoni
MGP_CAROLIEiJ_G0026078	Prpf4	100	80.038	ENSHGLG00000003838	-	100	80.038	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.656	ENSHGLG00000015191	PRPF4	100	98.656	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0026078	Prpf4	100	81.453	ENSHGLG00000016628	-	100	82.218	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0026078	Prpf4	100	80.038	ENSHGLG00100005571	-	100	80.038	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0026078	Prpf4	97	79.010	ENSIPUG00000017956	PRPF4	99	79.010	Ictalurus_punctatus
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.848	ENSSTOG00000027833	PRPF4	100	98.848	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.040	ENSJJAG00000008838	Prpf4	100	99.040	Jaculus_jaculus
MGP_CAROLIEiJ_G0026078	Prpf4	96	76.389	ENSKMAG00000013236	prpf4	99	76.389	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0026078	Prpf4	96	75.697	ENSLBEG00000020611	prpf4	99	75.697	Labrus_bergylta
MGP_CAROLIEiJ_G0026078	Prpf4	99	80.539	ENSLACG00000016317	PRPF4	99	80.539	Latimeria_chalumnae
MGP_CAROLIEiJ_G0026078	Prpf4	97	81.980	ENSLOCG00000000581	prpf4	99	81.980	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.659	ENSLAFG00000018225	PRPF4	100	98.659	Loxodonta_africana
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.848	ENSMFAG00000039397	PRPF4	100	98.848	Macaca_fascicularis
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.040	ENSMMUG00000005844	PRPF4	100	99.040	Macaca_mulatta
MGP_CAROLIEiJ_G0026078	Prpf4	100	88.676	ENSMNEG00000033737	PRPF4	100	88.676	Macaca_nemestrina
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.040	ENSMLEG00000040284	PRPF4	100	99.040	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0026078	Prpf4	97	75.937	ENSMAMG00000020141	prpf4	99	75.937	Mastacembelus_armatus
MGP_CAROLIEiJ_G0026078	Prpf4	96	76.786	ENSMZEG00005023205	prpf4	99	76.786	Maylandia_zebra
MGP_CAROLIEiJ_G0026078	Prpf4	99	88.077	ENSMGAG00000001796	PRPF4	97	88.077	Meleagris_gallopavo
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.232	ENSMAUG00000018022	Prpf4	100	99.232	Mesocricetus_auratus
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.273	ENSMICG00000015022	PRPF4	100	98.084	Microcebus_murinus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.232	ENSMOCG00000018273	Prpf4	100	99.232	Microtus_ochrogaster
MGP_CAROLIEiJ_G0026078	Prpf4	97	75.050	ENSMMOG00000021177	prpf4	99	75.050	Mola_mola
MGP_CAROLIEiJ_G0026078	Prpf4	100	94.455	ENSMODG00000004444	-	100	94.455	Monodelphis_domestica
MGP_CAROLIEiJ_G0026078	Prpf4	100	95.029	ENSMODG00000025096	-	97	95.029	Monodelphis_domestica
MGP_CAROLIEiJ_G0026078	Prpf4	96	76.389	ENSMALG00000013624	prpf4	99	76.389	Monopterus_albus
MGP_CAROLIEiJ_G0026078	Prpf4	100	100.000	ENSMUSG00000066148	Prpf4	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.808	MGP_PahariEiJ_G0028413	Prpf4	100	99.808	Mus_pahari
MGP_CAROLIEiJ_G0026078	Prpf4	100	100.000	MGP_SPRETEiJ_G0027042	Prpf4	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.232	ENSMPUG00000007883	PRPF4	100	99.232	Mustela_putorius_furo
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.848	ENSMLUG00000015309	-	97	98.848	Myotis_lucifugus
MGP_CAROLIEiJ_G0026078	Prpf4	100	96.929	ENSMLUG00000008626	-	97	96.929	Myotis_lucifugus
MGP_CAROLIEiJ_G0026078	Prpf4	100	93.666	ENSNGAG00000000468	Prpf4	100	93.666	Nannospalax_galili
MGP_CAROLIEiJ_G0026078	Prpf4	96	76.984	ENSNBRG00000007972	prpf4	99	76.984	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.424	ENSNLEG00000016647	PRPF4	100	99.424	Nomascus_leucogenys
MGP_CAROLIEiJ_G0026078	Prpf4	99	95.136	ENSMEUG00000013256	PRPF4	100	95.136	Notamacropus_eugenii
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.467	ENSOPRG00000005302	PRPF4	100	98.467	Ochotona_princeps
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.040	ENSODEG00000018147	PRPF4	100	99.040	Octodon_degus
MGP_CAROLIEiJ_G0026078	Prpf4	99	75.096	ENSONIG00000012671	prpf4	99	76.786	Oreochromis_niloticus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.232	ENSOCUG00000005046	PRPF4	100	99.232	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0026078	Prpf4	96	74.701	ENSORLG00000019641	prpf4	99	74.701	Oryzias_latipes
MGP_CAROLIEiJ_G0026078	Prpf4	96	74.701	ENSORLG00020019438	prpf4	99	74.701	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0026078	Prpf4	96	74.526	ENSOMEG00000020941	prpf4	99	74.526	Oryzias_melastigma
MGP_CAROLIEiJ_G0026078	Prpf4	100	94.050	ENSOGAG00000007802	PRPF4	98	94.050	Otolemur_garnettii
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.848	ENSOARG00000006319	PRPF4	97	98.848	Ovis_aries
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.040	ENSPPAG00000041797	PRPF4	100	99.040	Pan_paniscus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.424	ENSPPRG00000014360	PRPF4	100	99.424	Panthera_pardus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.424	ENSPTIG00000009574	PRPF4	100	99.424	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.040	ENSPTRG00000021274	PRPF4	100	98.851	Pan_troglodytes
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.848	ENSPANG00000025776	PRPF4	96	98.848	Papio_anubis
MGP_CAROLIEiJ_G0026078	Prpf4	97	81.386	ENSPKIG00000017259	prpf4	99	81.386	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0026078	Prpf4	100	89.443	ENSPSIG00000010713	PRPF4	90	90.998	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0026078	Prpf4	99	58.545	ENSPMGG00000000997	prpf4	99	58.652	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.808	ENSPEMG00000024115	Prpf4	100	99.808	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0026078	Prpf4	99	95.136	ENSPCIG00000003821	PRPF4	99	95.136	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0026078	Prpf4	96	70.020	ENSPFOG00000013524	prpf4	98	72.981	Poecilia_formosa
MGP_CAROLIEiJ_G0026078	Prpf4	82	69.659	ENSPLAG00000011620	prpf4	96	72.050	Poecilia_latipinna
MGP_CAROLIEiJ_G0026078	Prpf4	92	74.096	ENSPMEG00000006813	prpf4	98	74.096	Poecilia_mexicana
MGP_CAROLIEiJ_G0026078	Prpf4	98	98.633	ENSPCAG00000002561	PRPF4	99	98.633	Procavia_capensis
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.848	ENSPCOG00000011975	PRPF4	100	98.848	Propithecus_coquereli
MGP_CAROLIEiJ_G0026078	Prpf4	100	95.211	ENSPVAG00000004708	PRPF4	100	95.211	Pteropus_vampyrus
MGP_CAROLIEiJ_G0026078	Prpf4	96	76.786	ENSPNYG00000008013	prpf4	99	76.786	Pundamilia_nyererei
MGP_CAROLIEiJ_G0026078	Prpf4	97	80.594	ENSPNAG00000000697	prpf4	99	80.594	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.808	ENSRNOG00000014777	Prpf4	100	99.808	Rattus_norvegicus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.232	ENSRBIG00000040221	PRPF4	100	99.232	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.232	ENSRROG00000040240	PRPF4	100	99.232	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0026078	Prpf4	100	95.411	ENSSHAG00000017658	PRPF4	100	95.411	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0026078	Prpf4	97	82.178	ENSSFOG00015008963	prpf4	99	82.178	Scleropages_formosus
MGP_CAROLIEiJ_G0026078	Prpf4	96	75.397	ENSSMAG00000008889	prpf4	99	75.397	Scophthalmus_maximus
MGP_CAROLIEiJ_G0026078	Prpf4	96	73.307	ENSSDUG00000022083	prpf4	98	73.506	Seriola_dumerili
MGP_CAROLIEiJ_G0026078	Prpf4	96	73.506	ENSSLDG00000008115	prpf4	98	73.705	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0026078	Prpf4	100	90.403	ENSSPUG00000015582	PRPF4	100	90.403	Sphenodon_punctatus
MGP_CAROLIEiJ_G0026078	Prpf4	96	71.006	ENSSPAG00000011286	prpf4	99	71.006	Stegastes_partitus
MGP_CAROLIEiJ_G0026078	Prpf4	100	99.424	ENSSSCG00000024648	PRPF4	100	99.424	Sus_scrofa
MGP_CAROLIEiJ_G0026078	Prpf4	95	90.061	ENSTGUG00000002623	PRPF4	100	90.389	Taeniopygia_guttata
MGP_CAROLIEiJ_G0026078	Prpf4	97	75.692	ENSTRUG00000008853	prpf4	99	75.692	Takifugu_rubripes
MGP_CAROLIEiJ_G0026078	Prpf4	97	75.050	ENSTNIG00000013250	prpf4	99	75.050	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0026078	Prpf4	100	90.230	ENSTBEG00000000821	PRPF4	100	90.230	Tupaia_belangeri
MGP_CAROLIEiJ_G0026078	Prpf4	82	98.993	ENSTTRG00000003246	PRPF4	85	98.993	Tursiops_truncatus
MGP_CAROLIEiJ_G0026078	Prpf4	64	96.108	ENSUAMG00000018288	PRPF4	90	96.108	Ursus_americanus
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.464	ENSUMAG00000019375	PRPF4	100	98.464	Ursus_maritimus
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.659	ENSVPAG00000005281	PRPF4	100	98.659	Vicugna_pacos
MGP_CAROLIEiJ_G0026078	Prpf4	100	98.095	ENSVVUG00000002476	PRPF4	100	98.095	Vulpes_vulpes
MGP_CAROLIEiJ_G0026078	Prpf4	69	58.056	ENSXCOG00000006101	prpf4	93	59.653	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0026078	Prpf4	88	64.410	ENSXMAG00000002750	prpf4	98	65.408	Xiphophorus_maculatus