EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0026325 (Gene tree)
Gene ID: 110293393
Gene Symbol: Rad54l
Alias: RAD54
Full Name: RAD54 like (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 30681 bases
Position: chr4:106528260-106558940
Accession: 894697
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0063748	ResIII	PF04851.15	1.8e-09	1	1
MGP_CAROLIEiJ_P0063748	DEAD	PF00270.29	6.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0063748	-	2295	-	MGP_CAROLIEiJ_P0063748	764 (aa)	-	-
MGP_CAROLIEiJ_T0063749	-	593	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0063747	-	4451	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0026325's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0026325's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0026325	Rad54l	65	32.934	MGP_CAROLIEiJ_G0033034	Smarca1	61	32.485
MGP_CAROLIEiJ_G0026325	Rad54l	68	30.286	MGP_CAROLIEiJ_G0025401	Chd1l	54	30.286
MGP_CAROLIEiJ_G0026325	Rad54l	84	45.133	MGP_CAROLIEiJ_G0025810	Rad54b	75	45.133

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.700	ENSG00000085999	RAD54L	100	97.333	Homo_sapiens
MGP_CAROLIEiJ_G0026325	Rad54l	99	72.644	ENSAPOG00000011643	rad54l	99	72.644	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.426	ENSAMEG00000013902	RAD54L	99	89.426	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0026325	Rad54l	99	73.368	ENSACIG00000001939	rad54l	99	73.368	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0026325	Rad54l	99	75.524	ENSAOCG00000017576	rad54l	99	75.524	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0026325	Rad54l	95	76.776	ENSAPEG00000020658	rad54l	98	76.776	Amphiprion_percula
MGP_CAROLIEiJ_G0026325	Rad54l	94	77.379	ENSATEG00000006767	rad54l	99	77.379	Anabas_testudineus
MGP_CAROLIEiJ_G0026325	Rad54l	94	82.158	ENSAPLG00000006389	RAD54L	99	82.158	Anas_platyrhynchos
MGP_CAROLIEiJ_G0026325	Rad54l	99	79.557	ENSACAG00000002312	RAD54L	99	79.557	Anolis_carolinensis
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.439	ENSANAG00000035439	RAD54L	99	89.439	Aotus_nancymaae
MGP_CAROLIEiJ_G0026325	Rad54l	99	72.621	ENSACLG00000018711	rad54l	99	72.621	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0026325	Rad54l	99	76.010	ENSAMXG00000012777	rad54l	99	76.010	Astyanax_mexicanus
MGP_CAROLIEiJ_G0026325	Rad54l	100	89.857	ENSBTAG00000019901	RAD54L	99	89.857	Bos_taurus
MGP_CAROLIEiJ_G0026325	Rad54l	85	60.184	WBGene00004298	rad-54	79	60.184	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0026325	Rad54l	99	86.866	ENSCJAG00000021080	RAD54L	95	86.866	Callithrix_jacchus
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.309	ENSCAFG00000004272	RAD54L	99	89.309	Canis_familiaris
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.295	ENSCAFG00020015066	RAD54L	99	89.295	Canis_lupus_dingo
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.583	ENSCHIG00000020118	RAD54L	99	89.583	Capra_hircus
MGP_CAROLIEiJ_G0026325	Rad54l	99	88.802	ENSTSYG00000002032	RAD54L	99	88.802	Carlito_syrichta
MGP_CAROLIEiJ_G0026325	Rad54l	100	90.104	ENSCPOG00000006768	RAD54L	99	90.104	Cavia_porcellus
MGP_CAROLIEiJ_G0026325	Rad54l	99	90.091	ENSCCAG00000025783	RAD54L	99	90.091	Cebus_capucinus
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.570	ENSCATG00000030589	RAD54L	99	89.570	Cercocebus_atys
MGP_CAROLIEiJ_G0026325	Rad54l	100	90.495	ENSCLAG00000004645	RAD54L	99	90.495	Chinchilla_lanigera
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.700	ENSCSAG00000001229	RAD54L	99	89.700	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0026325	Rad54l	99	80.990	ENSCPBG00000005675	RAD54L	99	80.990	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0026325	Rad54l	99	60.606	ENSCING00000024456	-	99	60.530	Ciona_intestinalis
MGP_CAROLIEiJ_G0026325	Rad54l	99	61.408	ENSCSAVG00000010859	-	99	61.408	Ciona_savignyi
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.439	ENSCANG00000034891	RAD54L	99	89.439	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0026325	Rad54l	100	91.406	ENSCGRG00001014807	Rad54l	100	91.406	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0026325	Rad54l	100	91.406	ENSCGRG00000016038	Rad54l	100	91.406	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0026325	Rad54l	99	73.856	ENSCSEG00000001983	rad54l	99	73.856	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0026325	Rad54l	82	81.423	ENSCVAG00000019561	rad54l	96	81.423	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0026325	Rad54l	99	75.098	ENSDARG00000018623	rad54l	99	75.098	Danio_rerio
MGP_CAROLIEiJ_G0026325	Rad54l	100	88.411	ENSDNOG00000003395	RAD54L	100	88.411	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0026325	Rad54l	99	80.545	ENSDORG00000002632	Rad54l	99	80.545	Dipodomys_ordii
MGP_CAROLIEiJ_G0026325	Rad54l	99	53.359	FBgn0002989	okr	95	53.359	Drosophila_melanogaster
MGP_CAROLIEiJ_G0026325	Rad54l	78	95.161	ENSETEG00000000550	RAD54L	78	95.161	Echinops_telfairi
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.426	ENSEASG00005004511	RAD54L	94	94.992	Equus_asinus_asinus
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.831	ENSECAG00000008760	RAD54L	99	96.748	Equus_caballus
MGP_CAROLIEiJ_G0026325	Rad54l	86	93.636	ENSEEUG00000008113	RAD54L	88	93.636	Erinaceus_europaeus
MGP_CAROLIEiJ_G0026325	Rad54l	99	75.714	ENSELUG00000002295	rad54l	99	75.714	Esox_lucius
MGP_CAROLIEiJ_G0026325	Rad54l	100	88.672	ENSFCAG00000003444	RAD54L	100	88.672	Felis_catus
MGP_CAROLIEiJ_G0026325	Rad54l	99	80.599	ENSFALG00000009480	RAD54L	99	80.599	Ficedula_albicollis
MGP_CAROLIEiJ_G0026325	Rad54l	99	90.613	ENSFDAG00000007806	RAD54L	99	90.613	Fukomys_damarensis
MGP_CAROLIEiJ_G0026325	Rad54l	62	71.610	ENSFHEG00000009824	rad54l	78	71.610	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0026325	Rad54l	99	74.151	ENSGMOG00000014568	rad54l	99	74.151	Gadus_morhua
MGP_CAROLIEiJ_G0026325	Rad54l	99	80.183	ENSGALG00000010356	RAD54L	92	80.183	Gallus_gallus
MGP_CAROLIEiJ_G0026325	Rad54l	91	73.820	ENSGAFG00000011110	rad54l	100	73.820	Gambusia_affinis
MGP_CAROLIEiJ_G0026325	Rad54l	99	74.609	ENSGACG00000003111	rad54l	97	74.609	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0026325	Rad54l	99	80.834	ENSGAGG00000014089	RAD54L	96	80.834	Gopherus_agassizii
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.570	ENSGGOG00000010602	RAD54L	99	89.570	Gorilla_gorilla
MGP_CAROLIEiJ_G0026325	Rad54l	99	72.751	ENSHBUG00000007793	rad54l	99	72.751	Haplochromis_burtoni
MGP_CAROLIEiJ_G0026325	Rad54l	99	90.222	ENSHGLG00000000753	RAD54L	99	90.222	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0026325	Rad54l	99	90.091	ENSHGLG00100016987	RAD54L	99	90.091	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0026325	Rad54l	99	73.930	ENSIPUG00000015999	rad54l	99	76.528	Ictalurus_punctatus
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.961	ENSSTOG00000029125	RAD54L	99	89.961	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0026325	Rad54l	99	80.577	ENSJJAG00000000235	-	99	80.446	Jaculus_jaculus
MGP_CAROLIEiJ_G0026325	Rad54l	99	74.507	ENSKMAG00000009944	rad54l	99	74.507	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0026325	Rad54l	99	76.209	ENSLBEG00000014617	rad54l	95	82.219	Labrus_bergylta
MGP_CAROLIEiJ_G0026325	Rad54l	99	77.457	ENSLOCG00000004144	rad54l	100	78.582	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.687	ENSLAFG00000007583	RAD54L	99	89.687	Loxodonta_africana
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.570	ENSMFAG00000031241	RAD54L	99	89.570	Macaca_fascicularis
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.570	ENSMMUG00000011568	RAD54L	99	89.570	Macaca_mulatta
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.570	ENSMNEG00000038562	RAD54L	99	89.570	Macaca_nemestrina
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.700	ENSMLEG00000038145	RAD54L	99	89.700	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0026325	Rad54l	99	75.521	ENSMAMG00000022180	rad54l	97	82.246	Mastacembelus_armatus
MGP_CAROLIEiJ_G0026325	Rad54l	99	72.490	ENSMZEG00005018081	rad54l	99	72.490	Maylandia_zebra
MGP_CAROLIEiJ_G0026325	Rad54l	99	80.287	ENSMGAG00000010634	RAD54L	99	80.287	Meleagris_gallopavo
MGP_CAROLIEiJ_G0026325	Rad54l	100	91.016	ENSMAUG00000020076	Rad54l	100	91.016	Mesocricetus_auratus
MGP_CAROLIEiJ_G0026325	Rad54l	99	90.613	ENSMICG00000003266	RAD54L	99	90.613	Microcebus_murinus
MGP_CAROLIEiJ_G0026325	Rad54l	100	91.797	ENSMOCG00000001778	Rad54l	100	91.797	Microtus_ochrogaster
MGP_CAROLIEiJ_G0026325	Rad54l	99	72.360	ENSMALG00000021148	rad54l	99	72.360	Monopterus_albus
MGP_CAROLIEiJ_G0026325	Rad54l	100	94.010	ENSMUSG00000028702	Rad54l	100	94.010	Mus_musculus
MGP_CAROLIEiJ_G0026325	Rad54l	100	94.010	MGP_PahariEiJ_G0028657	Rad54l	100	94.010	Mus_pahari
MGP_CAROLIEiJ_G0026325	Rad54l	100	93.880	MGP_SPRETEiJ_G0027297	Rad54l	100	93.880	Mus_spretus
MGP_CAROLIEiJ_G0026325	Rad54l	99	88.802	ENSMPUG00000012883	RAD54L	99	88.802	Mustela_putorius_furo
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.948	ENSMLUG00000003763	RAD54L	99	89.948	Myotis_lucifugus
MGP_CAROLIEiJ_G0026325	Rad54l	100	89.583	ENSNGAG00000024213	Rad54l	100	89.583	Nannospalax_galili
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.570	ENSNLEG00000016548	RAD54L	99	89.570	Nomascus_leucogenys
MGP_CAROLIEiJ_G0026325	Rad54l	86	83.612	ENSMEUG00000006793	RAD54L	97	83.612	Notamacropus_eugenii
MGP_CAROLIEiJ_G0026325	Rad54l	91	94.444	ENSOPRG00000016016	RAD54L	91	94.444	Ochotona_princeps
MGP_CAROLIEiJ_G0026325	Rad54l	100	90.755	ENSODEG00000008519	RAD54L	99	90.755	Octodon_degus
MGP_CAROLIEiJ_G0026325	Rad54l	99	72.751	ENSONIG00000007659	rad54l	99	72.751	Oreochromis_niloticus
MGP_CAROLIEiJ_G0026325	Rad54l	100	89.583	ENSOCUG00000005229	RAD54L	100	89.583	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0026325	Rad54l	99	73.107	ENSORLG00000002958	rad54l	99	74.021	Oryzias_latipes
MGP_CAROLIEiJ_G0026325	Rad54l	99	74.151	ENSORLG00020006554	rad54l	96	80.851	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0026325	Rad54l	99	73.890	ENSORLG00015002907	rad54l	99	74.151	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0026325	Rad54l	99	74.413	ENSOMEG00000007770	rad54l	99	74.413	Oryzias_melastigma
MGP_CAROLIEiJ_G0026325	Rad54l	100	89.481	ENSOARG00000002264	RAD54L	99	89.481	Ovis_aries
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.439	ENSPPAG00000031222	RAD54L	99	89.439	Pan_paniscus
MGP_CAROLIEiJ_G0026325	Rad54l	100	88.672	ENSPPRG00000010317	RAD54L	100	88.672	Panthera_pardus
MGP_CAROLIEiJ_G0026325	Rad54l	100	88.672	ENSPTIG00000012200	RAD54L	100	88.672	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.570	ENSPTRG00000000689	RAD54L	99	89.570	Pan_troglodytes
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.700	ENSPANG00000016295	RAD54L	99	89.700	Papio_anubis
MGP_CAROLIEiJ_G0026325	Rad54l	99	73.228	ENSPKIG00000016172	rad54l	99	73.228	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0026325	Rad54l	99	80.764	ENSPSIG00000003258	RAD54L	99	80.764	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0026325	Rad54l	99	72.405	ENSPMGG00000016335	rad54l	99	72.405	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0026325	Rad54l	100	91.536	ENSPEMG00000011422	Rad54l	100	91.536	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0026325	Rad54l	99	67.013	ENSPMAG00000007719	rad54l	99	67.013	Petromyzon_marinus
MGP_CAROLIEiJ_G0026325	Rad54l	99	82.529	ENSPCIG00000029032	RAD54L	99	82.529	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0026325	Rad54l	85	76.104	ENSPFOG00000013732	rad54l	100	76.104	Poecilia_formosa
MGP_CAROLIEiJ_G0026325	Rad54l	77	79.595	ENSPLAG00000023416	rad54l	96	79.595	Poecilia_latipinna
MGP_CAROLIEiJ_G0026325	Rad54l	91	74.069	ENSPMEG00000008299	rad54l	100	73.963	Poecilia_mexicana
MGP_CAROLIEiJ_G0026325	Rad54l	99	72.881	ENSPREG00000019955	rad54l	99	72.881	Poecilia_reticulata
MGP_CAROLIEiJ_G0026325	Rad54l	94	88.889	ENSPPYG00000001398	RAD54L	99	88.889	Pongo_abelii
MGP_CAROLIEiJ_G0026325	Rad54l	70	92.718	ENSPCAG00000005323	RAD54L	72	92.718	Procavia_capensis
MGP_CAROLIEiJ_G0026325	Rad54l	100	90.234	ENSPCOG00000015423	RAD54L	100	90.234	Propithecus_coquereli
MGP_CAROLIEiJ_G0026325	Rad54l	99	69.909	ENSPNYG00000002942	rad54l	99	69.909	Pundamilia_nyererei
MGP_CAROLIEiJ_G0026325	Rad54l	99	75.228	ENSPNAG00000012483	rad54l	99	75.228	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0026325	Rad54l	100	92.708	ENSRNOG00000013148	Rad54l	99	92.708	Rattus_norvegicus
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.439	ENSRBIG00000043495	RAD54L	99	89.439	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.570	ENSRROG00000020844	RAD54L	99	89.570	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0026325	Rad54l	79	48.228	YGL163C	RAD54	71	48.690	Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0026325	Rad54l	99	90.091	ENSSBOG00000024672	RAD54L	99	90.091	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0026325	Rad54l	99	82.750	ENSSHAG00000000110	RAD54L	99	82.750	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0026325	Rad54l	99	75.489	ENSSDUG00000019147	rad54l	99	75.489	Seriola_dumerili
MGP_CAROLIEiJ_G0026325	Rad54l	99	75.619	ENSSLDG00000012330	rad54l	99	75.619	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0026325	Rad54l	74	93.284	ENSSARG00000006689	RAD54L	91	93.284	Sorex_araneus
MGP_CAROLIEiJ_G0026325	Rad54l	99	75.033	ENSSPAG00000011016	rad54l	99	75.033	Stegastes_partitus
MGP_CAROLIEiJ_G0026325	Rad54l	99	88.918	ENSSSCG00000003905	RAD54L	99	88.918	Sus_scrofa
MGP_CAROLIEiJ_G0026325	Rad54l	99	80.078	ENSTGUG00000008233	RAD54L	99	80.208	Taeniopygia_guttata
MGP_CAROLIEiJ_G0026325	Rad54l	99	71.429	ENSTRUG00000008410	rad54l	99	71.429	Takifugu_rubripes
MGP_CAROLIEiJ_G0026325	Rad54l	99	71.149	ENSTNIG00000004716	rad54l	99	71.578	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0026325	Rad54l	86	91.061	ENSTTRG00000006315	RAD54L	88	91.061	Tursiops_truncatus
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.108	ENSUAMG00000011824	RAD54L	99	89.108	Ursus_americanus
MGP_CAROLIEiJ_G0026325	Rad54l	99	88.058	ENSUMAG00000023603	RAD54L	99	88.058	Ursus_maritimus
MGP_CAROLIEiJ_G0026325	Rad54l	99	89.309	ENSVVUG00000007201	RAD54L	99	89.309	Vulpes_vulpes
MGP_CAROLIEiJ_G0026325	Rad54l	96	73.243	ENSXETG00000004369	rad54l	99	73.243	Xenopus_tropicalis
MGP_CAROLIEiJ_G0026325	Rad54l	56	67.898	ENSXCOG00000016028	rad54l	81	71.026	Xiphophorus_couchianus