EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0026467 (Gene tree)
Gene ID: 110293029
Gene Symbol: Lsm10
Alias: -
Full Name: LSM10%2C U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 1976 bases
Position: chr4:115869992-115871967
Accession: 110293029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0064368	LSM	PF01423.22	7.7e-13	1	1
MGP_CAROLIEiJ_P0064366	LSM	PF01423.22	1.4e-12	1	1
MGP_CAROLIEiJ_P0064367	LSM	PF01423.22	1.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0064367	-	805	XM_021160773	MGP_CAROLIEiJ_P0064367	122 (aa)	XP_021016431	UPI000A31A0EF
MGP_CAROLIEiJ_T0064366	-	940	XM_021160771	MGP_CAROLIEiJ_P0064366	122 (aa)	XP_021016430	UPI000A31A0EF
MGP_CAROLIEiJ_T0064368	-	352	-	MGP_CAROLIEiJ_P0064368	93 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0026467's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0026467's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0026467	Lsm10	75	31.507	MGP_CAROLIEiJ_G0021490	Lsm2	77	31.507

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0026467	Lsm10	100	89.247	ENSG00000181817	LSM10	98	90.000	Homo_sapiens
MGP_CAROLIEiJ_G0026467	Lsm10	100	94.624	ENSAMEG00000019854	LSM10	98	91.736	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0026467	Lsm10	97	66.949	ENSACIG00000015420	oscp1a	78	66.949	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0026467	Lsm10	95	71.591	ENSAOCG00000014654	-	95	69.565	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0026467	Lsm10	98	69.231	ENSAOCG00000015607	LSM10	86	66.667	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0026467	Lsm10	95	71.591	ENSAOCG00000015618	LSM10	95	69.565	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0026467	Lsm10	98	69.231	ENSAPEG00000021851	LSM10	86	66.667	Amphiprion_percula
MGP_CAROLIEiJ_G0026467	Lsm10	95	71.591	ENSAPEG00000021845	-	95	69.565	Amphiprion_percula
MGP_CAROLIEiJ_G0026467	Lsm10	96	65.169	ENSATEG00000006310	oscp1a	83	63.393	Anabas_testudineus
MGP_CAROLIEiJ_G0026467	Lsm10	99	70.652	ENSACAG00000001231	LSM10	95	69.231	Anolis_carolinensis
MGP_CAROLIEiJ_G0026467	Lsm10	100	89.247	ENSANAG00000018759	-	98	90.833	Aotus_nancymaae
MGP_CAROLIEiJ_G0026467	Lsm10	100	88.172	ENSANAG00000031489	-	98	89.167	Aotus_nancymaae
MGP_CAROLIEiJ_G0026467	Lsm10	96	67.416	ENSACLG00000004728	oscp1a	94	67.241	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0026467	Lsm10	97	71.111	ENSAMXG00000025301	oscp1a	98	67.227	Astyanax_mexicanus
MGP_CAROLIEiJ_G0026467	Lsm10	100	91.398	ENSBTAG00000024096	LSM10	98	90.000	Bos_taurus
MGP_CAROLIEiJ_G0026467	Lsm10	100	88.172	ENSCJAG00000044880	LSM10	98	90.000	Callithrix_jacchus
MGP_CAROLIEiJ_G0026467	Lsm10	100	94.624	ENSCAFG00000003382	LSM10	98	93.388	Canis_familiaris
MGP_CAROLIEiJ_G0026467	Lsm10	100	94.624	ENSCAFG00020008920	LSM10	98	93.388	Canis_lupus_dingo
MGP_CAROLIEiJ_G0026467	Lsm10	100	91.398	ENSCHIG00000009398	LSM10	98	90.000	Capra_hircus
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSCAPG00000012567	LSM10	98	89.256	Cavia_aperea
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSCPOG00000039302	LSM10	98	89.256	Cavia_porcellus
MGP_CAROLIEiJ_G0026467	Lsm10	100	89.247	ENSCCAG00000018913	-	98	90.833	Cebus_capucinus
MGP_CAROLIEiJ_G0026467	Lsm10	100	89.247	ENSCCAG00000008378	-	98	89.167	Cebus_capucinus
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSCATG00000006589	LSM10	98	91.667	Cercocebus_atys
MGP_CAROLIEiJ_G0026467	Lsm10	100	92.473	ENSCLAG00000008633	LSM10	98	90.909	Chinchilla_lanigera
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSCSAG00000000134	LSM10	98	91.667	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSCHOG00000008615	LSM10	98	90.244	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0026467	Lsm10	94	31.034	ENSCSAVG00000001896	-	87	30.392	Ciona_savignyi
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSCANG00000019928	LSM10	98	91.667	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0026467	Lsm10	100	94.624	ENSCGRG00001004317	-	99	95.041	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0026467	Lsm10	94	84.615	ENSCGRG00001022673	-	94	84.615	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0026467	Lsm10	94	84.615	ENSCGRG00000015514	-	94	84.615	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0026467	Lsm10	100	94.624	ENSCGRG00000014935	-	99	95.041	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0026467	Lsm10	96	66.292	ENSCSEG00000010374	oscp1a	77	65.217	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0026467	Lsm10	99	69.565	ENSCVAG00000001536	oscp1a	90	65.546	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0026467	Lsm10	100	72.043	ENSDARG00000101222	oscp1a	100	69.421	Danio_rerio
MGP_CAROLIEiJ_G0026467	Lsm10	91	70.588	ENSDARG00000109563	CABZ01074453.1	99	70.588	Danio_rerio
MGP_CAROLIEiJ_G0026467	Lsm10	100	92.473	ENSDNOG00000036662	LSM10	98	93.333	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0026467	Lsm10	100	93.548	ENSDORG00000007579	Lsm10	98	92.562	Dipodomys_ordii
MGP_CAROLIEiJ_G0026467	Lsm10	90	32.143	FBgn0033554	Lsm10	60	32.143	Drosophila_melanogaster
MGP_CAROLIEiJ_G0026467	Lsm10	100	95.699	ENSETEG00000005703	LSM10	98	90.083	Echinops_telfairi
MGP_CAROLIEiJ_G0026467	Lsm10	98	56.044	ENSEBUG00000001312	oscp1a	100	48.361	Eptatretus_burgeri
MGP_CAROLIEiJ_G0026467	Lsm10	100	95.699	ENSEASG00005012194	LSM10	98	95.041	Equus_asinus_asinus
MGP_CAROLIEiJ_G0026467	Lsm10	100	94.624	ENSECAG00000005071	LSM10	98	94.215	Equus_caballus
MGP_CAROLIEiJ_G0026467	Lsm10	100	92.473	ENSEEUG00000012032	LSM10	98	91.736	Erinaceus_europaeus
MGP_CAROLIEiJ_G0026467	Lsm10	100	70.968	ENSELUG00000007452	oscp1a	99	66.942	Esox_lucius
MGP_CAROLIEiJ_G0026467	Lsm10	100	73.118	ENSFALG00000000851	LSM10	95	72.650	Ficedula_albicollis
MGP_CAROLIEiJ_G0026467	Lsm10	100	91.398	ENSFDAG00000021056	LSM10	98	89.256	Fukomys_damarensis
MGP_CAROLIEiJ_G0026467	Lsm10	90	71.429	ENSFHEG00000001058	oscp1a	95	68.182	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0026467	Lsm10	97	68.889	ENSGMOG00000019832	oscp1a	89	66.981	Gadus_morhua
MGP_CAROLIEiJ_G0026467	Lsm10	100	75.269	ENSGALG00000002127	LSM10	96	75.424	Gallus_gallus
MGP_CAROLIEiJ_G0026467	Lsm10	98	59.574	ENSGAFG00000016445	oscp1a	96	60.000	Gambusia_affinis
MGP_CAROLIEiJ_G0026467	Lsm10	96	68.539	ENSGACG00000002329	oscp1a	95	64.655	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0026467	Lsm10	100	78.495	ENSGAGG00000024848	LSM10	98	74.380	Gopherus_agassizii
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSGGOG00000003556	LSM10	98	91.667	Gorilla_gorilla
MGP_CAROLIEiJ_G0026467	Lsm10	96	67.416	ENSHBUG00000001722	oscp1a	94	67.241	Haplochromis_burtoni
MGP_CAROLIEiJ_G0026467	Lsm10	100	89.247	ENSHGLG00000011625	LSM10	98	88.430	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0026467	Lsm10	100	89.247	ENSHGLG00100001769	LSM10	98	88.430	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0026467	Lsm10	97	71.111	ENSIPUG00000005808	oscp1a	91	69.524	Ictalurus_punctatus
MGP_CAROLIEiJ_G0026467	Lsm10	100	94.624	ENSSTOG00000000606	LSM10	98	92.562	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0026467	Lsm10	96	68.539	ENSKMAG00000012143	oscp1a	96	65.517	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0026467	Lsm10	100	64.516	ENSLBEG00000017764	oscp1a	98	64.167	Labrus_bergylta
MGP_CAROLIEiJ_G0026467	Lsm10	100	73.118	ENSLACG00000015904	LSM10	93	71.901	Latimeria_chalumnae
MGP_CAROLIEiJ_G0026467	Lsm10	100	69.892	ENSLOCG00000018277	oscp1a	98	69.167	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0026467	Lsm10	100	95.699	ENSLAFG00000009600	LSM10	98	94.167	Loxodonta_africana
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSMFAG00000009115	LSM10	98	91.667	Macaca_fascicularis
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSMMUG00000017338	LSM10	98	91.667	Macaca_mulatta
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSMNEG00000020023	LSM10	98	91.667	Macaca_nemestrina
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSMLEG00000025150	LSM10	98	91.667	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0026467	Lsm10	100	67.742	ENSMAMG00000004427	oscp1a	98	64.167	Mastacembelus_armatus
MGP_CAROLIEiJ_G0026467	Lsm10	96	67.416	ENSMZEG00005026307	oscp1a	94	67.241	Maylandia_zebra
MGP_CAROLIEiJ_G0026467	Lsm10	100	74.194	ENSMGAG00000015707	LSM10	98	72.727	Meleagris_gallopavo
MGP_CAROLIEiJ_G0026467	Lsm10	99	94.215	ENSMAUG00000016624	Lsm10	99	94.215	Mesocricetus_auratus
MGP_CAROLIEiJ_G0026467	Lsm10	99	95.041	ENSMOCG00000021943	Lsm10	99	95.041	Microtus_ochrogaster
MGP_CAROLIEiJ_G0026467	Lsm10	95	69.318	ENSMMOG00000013597	oscp1a	88	66.102	Mola_mola
MGP_CAROLIEiJ_G0026467	Lsm10	100	83.871	ENSMODG00000023328	LSM10	98	81.818	Monodelphis_domestica
MGP_CAROLIEiJ_G0026467	Lsm10	61	70.175	ENSMALG00000012661	oscp1a	58	58.108	Monopterus_albus
MGP_CAROLIEiJ_G0026467	Lsm10	100	99.180	ENSMUSG00000050188	Lsm10	100	99.180	Mus_musculus
MGP_CAROLIEiJ_G0026467	Lsm10	100	99.180	MGP_PahariEiJ_G0028798	Lsm10	100	99.180	Mus_pahari
MGP_CAROLIEiJ_G0026467	Lsm10	100	99.180	MGP_SPRETEiJ_G0027446	Lsm10	100	99.180	Mus_spretus
MGP_CAROLIEiJ_G0026467	Lsm10	100	94.624	ENSMPUG00000018593	LSM10	98	93.388	Mustela_putorius_furo
MGP_CAROLIEiJ_G0026467	Lsm10	100	88.172	ENSMLUG00000023895	LSM10	98	87.603	Myotis_lucifugus
MGP_CAROLIEiJ_G0026467	Lsm10	100	95.699	ENSNGAG00000015011	Lsm10	98	95.041	Nannospalax_galili
MGP_CAROLIEiJ_G0026467	Lsm10	96	68.539	ENSNBRG00000014306	oscp1a	94	68.103	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSNLEG00000033754	LSM10	98	91.667	Nomascus_leucogenys
MGP_CAROLIEiJ_G0026467	Lsm10	100	83.871	ENSMEUG00000006313	LSM10	98	81.818	Notamacropus_eugenii
MGP_CAROLIEiJ_G0026467	Lsm10	100	91.398	ENSOPRG00000001699	LSM10	98	90.083	Ochotona_princeps
MGP_CAROLIEiJ_G0026467	Lsm10	100	92.473	ENSODEG00000019161	LSM10	98	90.909	Octodon_degus
MGP_CAROLIEiJ_G0026467	Lsm10	96	68.539	ENSONIG00000020904	oscp1a	95	68.103	Oreochromis_niloticus
MGP_CAROLIEiJ_G0026467	Lsm10	100	80.645	ENSOANG00000002066	LSM10	99	77.049	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0026467	Lsm10	100	89.247	ENSOCUG00000005333	LSM10	98	88.430	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0026467	Lsm10	96	68.539	ENSORLG00000009504	oscp1a	98	65.254	Oryzias_latipes
MGP_CAROLIEiJ_G0026467	Lsm10	96	68.539	ENSORLG00020016201	oscp1a	98	65.254	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0026467	Lsm10	96	67.416	ENSORLG00015007794	oscp1a	97	63.559	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0026467	Lsm10	100	93.548	ENSOGAG00000002653	LSM10	98	90.909	Otolemur_garnettii
MGP_CAROLIEiJ_G0026467	Lsm10	100	91.398	ENSOARG00000009596	LSM10	98	90.000	Ovis_aries
MGP_CAROLIEiJ_G0026467	Lsm10	100	89.247	ENSPPAG00000023465	LSM10	98	90.000	Pan_paniscus
MGP_CAROLIEiJ_G0026467	Lsm10	100	93.548	ENSPPRG00000014619	LSM10	98	93.388	Panthera_pardus
MGP_CAROLIEiJ_G0026467	Lsm10	100	93.548	ENSPTIG00000004613	LSM10	98	93.388	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0026467	Lsm10	100	89.247	ENSPTRG00000000539	LSM10	98	90.000	Pan_troglodytes
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSPANG00000023172	LSM10	98	91.667	Papio_anubis
MGP_CAROLIEiJ_G0026467	Lsm10	100	67.742	ENSPKIG00000003728	oscp1a	98	64.754	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0026467	Lsm10	100	78.495	ENSPSIG00000000590	LSM10	98	73.554	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0026467	Lsm10	82	63.158	ENSPMGG00000015718	oscp1a	99	63.158	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0026467	Lsm10	100	82.796	ENSPCIG00000014865	LSM10	76	83.495	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0026467	Lsm10	95	69.318	ENSPFOG00000020490	oscp1a	95	67.857	Poecilia_formosa
MGP_CAROLIEiJ_G0026467	Lsm10	95	69.318	ENSPLAG00000016537	oscp1a	85	67.857	Poecilia_latipinna
MGP_CAROLIEiJ_G0026467	Lsm10	90	70.238	ENSPMEG00000000174	oscp1a	94	68.519	Poecilia_mexicana
MGP_CAROLIEiJ_G0026467	Lsm10	95	68.182	ENSPREG00000009899	oscp1a	85	66.964	Poecilia_reticulata
MGP_CAROLIEiJ_G0026467	Lsm10	100	89.247	ENSPPYG00000001539	LSM10	98	90.833	Pongo_abelii
MGP_CAROLIEiJ_G0026467	Lsm10	100	93.548	ENSPCAG00000002520	LSM10	97	91.525	Procavia_capensis
MGP_CAROLIEiJ_G0026467	Lsm10	100	89.247	ENSPVAG00000008644	LSM10	98	88.430	Pteropus_vampyrus
MGP_CAROLIEiJ_G0026467	Lsm10	96	67.416	ENSPNYG00000003138	oscp1a	94	67.241	Pundamilia_nyererei
MGP_CAROLIEiJ_G0026467	Lsm10	96	68.539	ENSPNAG00000028829	oscp1a	98	64.407	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0026467	Lsm10	100	98.361	ENSRNOG00000025716	Lsm10	100	98.361	Rattus_norvegicus
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSRBIG00000001561	LSM10	98	91.667	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	ENSRROG00000011414	LSM10	98	91.667	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0026467	Lsm10	100	89.247	ENSSBOG00000036413	-	98	90.833	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0026467	Lsm10	100	83.871	ENSSHAG00000018056	LSM10	98	81.818	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0026467	Lsm10	100	67.742	ENSSFOG00015019954	lsm10	100	64.754	Scleropages_formosus
MGP_CAROLIEiJ_G0026467	Lsm10	95	68.182	ENSSMAG00000001297	oscp1a	98	66.087	Scophthalmus_maximus
MGP_CAROLIEiJ_G0026467	Lsm10	96	67.416	ENSSDUG00000007090	oscp1a	94	64.655	Seriola_dumerili
MGP_CAROLIEiJ_G0026467	Lsm10	96	68.539	ENSSLDG00000000800	oscp1a	96	65.517	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0026467	Lsm10	100	93.548	ENSSARG00000004211	LSM10	98	90.244	Sorex_araneus
MGP_CAROLIEiJ_G0026467	Lsm10	97	68.889	ENSSPAG00000009229	oscp1a	96	66.379	Stegastes_partitus
MGP_CAROLIEiJ_G0026467	Lsm10	100	92.473	ENSSSCG00000038916	LSM10	98	90.000	Sus_scrofa
MGP_CAROLIEiJ_G0026467	Lsm10	100	72.043	ENSTGUG00000001600	-	99	71.074	Taeniopygia_guttata
MGP_CAROLIEiJ_G0026467	Lsm10	100	72.043	ENSTGUG00000001602	-	99	71.074	Taeniopygia_guttata
MGP_CAROLIEiJ_G0026467	Lsm10	95	71.591	ENSTRUG00000010531	oscp1a	94	67.241	Takifugu_rubripes
MGP_CAROLIEiJ_G0026467	Lsm10	100	91.398	ENSTBEG00000016674	LSM10	98	93.333	Tupaia_belangeri
MGP_CAROLIEiJ_G0026467	Lsm10	100	94.624	ENSUAMG00000020265	LSM10	98	92.562	Ursus_americanus
MGP_CAROLIEiJ_G0026467	Lsm10	100	94.624	ENSUMAG00000001438	LSM10	56	92.562	Ursus_maritimus
MGP_CAROLIEiJ_G0026467	Lsm10	100	94.624	ENSVVUG00000023209	LSM10	98	93.388	Vulpes_vulpes
MGP_CAROLIEiJ_G0026467	Lsm10	100	75.269	ENSXETG00000027631	lsm10	99	69.672	Xenopus_tropicalis
MGP_CAROLIEiJ_G0026467	Lsm10	95	65.909	ENSXCOG00000018776	oscp1a	74	64.103	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0026467	Lsm10	100	63.542	ENSXMAG00000019963	oscp1a	96	63.333	Xiphophorus_maculatus