EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0026487 (Gene tree)
Gene ID: 110292821
Gene Symbol: Sfpq
Alias: 1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|D4Ertd314e|PSF|REP1
Full Name: splicing factor proline and glutamine rich
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 15965 bases
Position: chr4:116787758-116803722
Accession: 110292821
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0064462	RRM_1	PF00076.22	5.8e-30	1	2
MGP_CAROLIEiJ_P0064462	RRM_1	PF00076.22	5.8e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0064466	-	969	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0064467	-	638	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0064464	-	879	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0064465	-	599	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0064462	-	3446	-	MGP_CAROLIEiJ_P0064462	700 (aa)	XP_021016069	UPI000A317D9D
MGP_CAROLIEiJ_T0064463	-	755	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0026487's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0026487's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0026487	Sfpq	54	66.062	MGP_CAROLIEiJ_G0019341	Pspc1	84	71.429

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0026487	Sfpq	69	98.347	ENSG00000116560	SFPQ	97	99.074	Homo_sapiens
MGP_CAROLIEiJ_G0026487	Sfpq	62	74.596	ENSAPOG00000024257	sfpq	62	75.000	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0026487	Sfpq	63	99.318	ENSAMEG00000000815	SFPQ	100	99.318	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0026487	Sfpq	79	61.348	ENSACIG00000000905	sfpq	72	70.252	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0026487	Sfpq	61	74.246	ENSAOCG00000002889	sfpq	60	74.312	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0026487	Sfpq	61	74.246	ENSAPEG00000016556	sfpq	60	74.312	Amphiprion_percula
MGP_CAROLIEiJ_G0026487	Sfpq	66	73.763	ENSATEG00000002981	sfpq	67	76.082	Anabas_testudineus
MGP_CAROLIEiJ_G0026487	Sfpq	50	76.000	ENSANAG00000037798	-	99	75.714	Aotus_nancymaae
MGP_CAROLIEiJ_G0026487	Sfpq	92	96.154	ENSANAG00000027438	-	68	82.766	Aotus_nancymaae
MGP_CAROLIEiJ_G0026487	Sfpq	50	75.141	ENSANAG00000021268	-	100	74.074	Aotus_nancymaae
MGP_CAROLIEiJ_G0026487	Sfpq	63	69.977	ENSAMXG00000011538	sfpq	65	72.500	Astyanax_mexicanus
MGP_CAROLIEiJ_G0026487	Sfpq	69	98.347	ENSBTAG00000016328	SFPQ	68	98.954	Bos_taurus
MGP_CAROLIEiJ_G0026487	Sfpq	69	98.140	ENSCJAG00000001431	SFPQ	68	98.745	Callithrix_jacchus
MGP_CAROLIEiJ_G0026487	Sfpq	85	81.135	ENSCAFG00000017608	-	65	92.517	Canis_familiaris
MGP_CAROLIEiJ_G0026487	Sfpq	83	95.697	ENSCAFG00000003595	-	73	98.745	Canis_familiaris
MGP_CAROLIEiJ_G0026487	Sfpq	85	84.333	ENSCAFG00000018271	-	66	92.744	Canis_familiaris
MGP_CAROLIEiJ_G0026487	Sfpq	50	90.598	ENSCAFG00020010702	-	100	90.598	Canis_lupus_dingo
MGP_CAROLIEiJ_G0026487	Sfpq	85	84.193	ENSCAFG00020004881	-	66	92.744	Canis_lupus_dingo
MGP_CAROLIEiJ_G0026487	Sfpq	69	98.347	ENSCHIG00000023097	SFPQ	67	98.954	Capra_hircus
MGP_CAROLIEiJ_G0026487	Sfpq	50	85.100	ENSTSYG00000035106	-	98	85.100	Carlito_syrichta
MGP_CAROLIEiJ_G0026487	Sfpq	50	99.430	ENSTSYG00000037120	-	100	99.430	Carlito_syrichta
MGP_CAROLIEiJ_G0026487	Sfpq	50	90.883	ENSCPOG00000015018	-	100	88.981	Cavia_porcellus
MGP_CAROLIEiJ_G0026487	Sfpq	69	97.934	ENSCCAG00000029361	-	68	98.536	Cebus_capucinus
MGP_CAROLIEiJ_G0026487	Sfpq	61	94.811	ENSCATG00000036179	-	61	95.923	Cercocebus_atys
MGP_CAROLIEiJ_G0026487	Sfpq	69	72.301	ENSCATG00000032664	-	66	72.934	Cercocebus_atys
MGP_CAROLIEiJ_G0026487	Sfpq	50	99.430	ENSCLAG00000009583	-	100	99.430	Chinchilla_lanigera
MGP_CAROLIEiJ_G0026487	Sfpq	69	98.347	ENSCSAG00000001082	SFPQ	68	98.954	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0026487	Sfpq	54	94.737	ENSCHOG00000009131	SFPQ	100	94.737	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0026487	Sfpq	63	93.213	ENSCPBG00000018674	SFPQ	69	92.568	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0026487	Sfpq	50	99.430	ENSCANG00000028087	-	100	99.430	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0026487	Sfpq	100	97.727	ENSCGRG00001011698	Sfpq	100	97.727	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0026487	Sfpq	62	100.000	ENSCGRG00000010128	Sfpq	95	100.000	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0026487	Sfpq	62	74.600	ENSCSEG00000007852	sfpq	66	73.165	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0026487	Sfpq	61	70.023	ENSCVAG00000019538	sfpq	64	67.371	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0026487	Sfpq	63	71.526	ENSDARG00000011564	sfpq	100	83.478	Danio_rerio
MGP_CAROLIEiJ_G0026487	Sfpq	69	97.934	ENSDNOG00000049454	SFPQ	84	95.142	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0026487	Sfpq	69	98.347	ENSDORG00000008109	Sfpq	85	95.980	Dipodomys_ordii
MGP_CAROLIEiJ_G0026487	Sfpq	62	92.575	ENSETEG00000001095	SFPQ	61	92.575	Echinops_telfairi
MGP_CAROLIEiJ_G0026487	Sfpq	80	94.840	ENSEASG00005012012	SFPQ	96	91.189	Equus_asinus_asinus
MGP_CAROLIEiJ_G0026487	Sfpq	80	94.840	ENSECAG00000000642	SFPQ	96	91.189	Equus_caballus
MGP_CAROLIEiJ_G0026487	Sfpq	61	72.917	ENSELUG00000023145	sfpq	66	71.694	Esox_lucius
MGP_CAROLIEiJ_G0026487	Sfpq	85	95.645	ENSFCAG00000042862	SFPQ	85	95.645	Felis_catus
MGP_CAROLIEiJ_G0026487	Sfpq	50	94.587	ENSFALG00000000731	SFPQ	100	94.587	Ficedula_albicollis
MGP_CAROLIEiJ_G0026487	Sfpq	50	90.313	ENSFDAG00000017723	-	100	90.652	Fukomys_damarensis
MGP_CAROLIEiJ_G0026487	Sfpq	62	66.820	ENSFHEG00000015200	sfpq	56	68.736	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0026487	Sfpq	62	74.943	ENSGMOG00000011950	SFPQ	74	75.000	Gadus_morhua
MGP_CAROLIEiJ_G0026487	Sfpq	68	68.399	ENSGMOG00000011957	sfpq	65	73.782	Gadus_morhua
MGP_CAROLIEiJ_G0026487	Sfpq	63	94.292	ENSGALG00000002514	SFPQ	68	94.292	Gallus_gallus
MGP_CAROLIEiJ_G0026487	Sfpq	90	53.077	ENSGAFG00000014571	sfpq	57	77.607	Gambusia_affinis
MGP_CAROLIEiJ_G0026487	Sfpq	80	62.248	ENSGACG00000002034	sfpq	68	74.654	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0026487	Sfpq	75	99.076	ENSGGOG00000026354	SFPQ	100	99.430	Gorilla_gorilla
MGP_CAROLIEiJ_G0026487	Sfpq	63	72.297	ENSHBUG00000016818	sfpq	63	72.851	Haplochromis_burtoni
MGP_CAROLIEiJ_G0026487	Sfpq	68	98.129	ENSHGLG00000012001	SFPQ	86	91.500	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0026487	Sfpq	50	99.430	ENSHGLG00100004136	-	100	99.430	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0026487	Sfpq	64	72.991	ENSHCOG00000008612	sfpq	70	68.372	Hippocampus_comes
MGP_CAROLIEiJ_G0026487	Sfpq	64	69.248	ENSIPUG00000013076	SFPQ	73	72.540	Ictalurus_punctatus
MGP_CAROLIEiJ_G0026487	Sfpq	50	99.430	ENSSTOG00000014004	-	100	99.430	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0026487	Sfpq	69	98.554	ENSJJAG00000015633	Sfpq	68	98.745	Jaculus_jaculus
MGP_CAROLIEiJ_G0026487	Sfpq	62	69.725	ENSKMAG00000000238	sfpq	54	71.034	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0026487	Sfpq	62	76.256	ENSLACG00000014728	SFPQ	70	80.324	Latimeria_chalumnae
MGP_CAROLIEiJ_G0026487	Sfpq	90	61.385	ENSLOCG00000001067	sfpq	68	81.912	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0026487	Sfpq	97	86.873	ENSLAFG00000015951	SFPQ	96	89.676	Loxodonta_africana
MGP_CAROLIEiJ_G0026487	Sfpq	69	98.140	ENSMFAG00000000797	SFPQ	68	98.745	Macaca_fascicularis
MGP_CAROLIEiJ_G0026487	Sfpq	69	98.140	ENSMMUG00000019154	SFPQ	68	98.745	Macaca_mulatta
MGP_CAROLIEiJ_G0026487	Sfpq	69	98.347	ENSMNEG00000038895	SFPQ	68	98.954	Macaca_nemestrina
MGP_CAROLIEiJ_G0026487	Sfpq	50	96.296	ENSMLEG00000010643	-	100	96.296	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0026487	Sfpq	78	66.727	ENSMAMG00000007875	sfpq	66	77.726	Mastacembelus_armatus
MGP_CAROLIEiJ_G0026487	Sfpq	63	72.624	ENSMZEG00005026091	sfpq	64	72.851	Maylandia_zebra
MGP_CAROLIEiJ_G0026487	Sfpq	54	91.049	ENSMGAG00000004237	SFPQ	100	91.049	Meleagris_gallopavo
MGP_CAROLIEiJ_G0026487	Sfpq	100	97.727	ENSMAUG00000006402	Sfpq	100	97.727	Mesocricetus_auratus
MGP_CAROLIEiJ_G0026487	Sfpq	69	98.347	ENSMICG00000027265	SFPQ	68	98.954	Microcebus_murinus
MGP_CAROLIEiJ_G0026487	Sfpq	69	95.652	ENSMOCG00000019075	Sfpq	100	95.652	Microtus_ochrogaster
MGP_CAROLIEiJ_G0026487	Sfpq	80	64.134	ENSMMOG00000001074	sfpq	65	74.651	Mola_mola
MGP_CAROLIEiJ_G0026487	Sfpq	64	95.291	ENSMODG00000017937	SFPQ	72	93.595	Monodelphis_domestica
MGP_CAROLIEiJ_G0026487	Sfpq	61	75.116	ENSMALG00000010381	sfpq	64	75.584	Monopterus_albus
MGP_CAROLIEiJ_G0026487	Sfpq	100	99.857	ENSMUSG00000028820	Sfpq	100	99.857	Mus_musculus
MGP_CAROLIEiJ_G0026487	Sfpq	100	99.000	MGP_PahariEiJ_G0028818	Sfpq	100	99.000	Mus_pahari
MGP_CAROLIEiJ_G0026487	Sfpq	100	99.857	MGP_SPRETEiJ_G0027466	Sfpq	100	99.857	Mus_spretus
MGP_CAROLIEiJ_G0026487	Sfpq	64	96.444	ENSMLUG00000027090	SFPQ	100	96.444	Myotis_lucifugus
MGP_CAROLIEiJ_G0026487	Sfpq	69	98.557	ENSNGAG00000000888	Sfpq	68	98.956	Nannospalax_galili
MGP_CAROLIEiJ_G0026487	Sfpq	90	57.753	ENSNBRG00000017479	sfpq	64	73.077	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0026487	Sfpq	50	99.430	ENSNLEG00000035521	-	100	99.430	Nomascus_leucogenys
MGP_CAROLIEiJ_G0026487	Sfpq	66	95.900	ENSMEUG00000014082	SFPQ	63	95.238	Notamacropus_eugenii
MGP_CAROLIEiJ_G0026487	Sfpq	72	93.294	ENSOPRG00000013696	SFPQ	68	96.234	Ochotona_princeps
MGP_CAROLIEiJ_G0026487	Sfpq	66	87.013	ENSODEG00000005485	SFPQ	85	86.422	Octodon_degus
MGP_CAROLIEiJ_G0026487	Sfpq	63	73.423	ENSONIG00000017737	sfpq	57	79.781	Oreochromis_niloticus
MGP_CAROLIEiJ_G0026487	Sfpq	50	96.866	ENSOANG00000008789	-	100	96.866	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0026487	Sfpq	73	89.443	ENSOCUG00000001877	SFPQ	92	94.167	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0026487	Sfpq	72	65.029	ENSORLG00000007459	sfpq	57	71.694	Oryzias_latipes
MGP_CAROLIEiJ_G0026487	Sfpq	99	52.493	ENSOMEG00000018020	sfpq	58	70.295	Oryzias_melastigma
MGP_CAROLIEiJ_G0026487	Sfpq	75	96.597	ENSOGAG00000027710	SFPQ	100	96.597	Otolemur_garnettii
MGP_CAROLIEiJ_G0026487	Sfpq	74	99.306	ENSOARG00000019439	SFPQ	80	99.306	Ovis_aries
MGP_CAROLIEiJ_G0026487	Sfpq	50	99.148	ENSPPRG00000015478	-	100	99.148	Panthera_pardus
MGP_CAROLIEiJ_G0026487	Sfpq	50	99.430	ENSPTIG00000007710	-	100	99.430	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0026487	Sfpq	69	92.149	ENSPTRG00000000518	SFPQ	66	92.678	Pan_troglodytes
MGP_CAROLIEiJ_G0026487	Sfpq	77	66.117	ENSPKIG00000023035	sfpq	73	79.493	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0026487	Sfpq	62	94.664	ENSPSIG00000011494	SFPQ	100	94.664	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0026487	Sfpq	61	69.249	ENSPMGG00000023883	sfpq	58	81.424	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0026487	Sfpq	67	99.151	ENSPEMG00000009794	Sfpq	97	99.151	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0026487	Sfpq	64	95.516	ENSPCIG00000000923	SFPQ	69	93.595	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0026487	Sfpq	90	52.741	ENSPFOG00000003127	sfpq	71	68.360	Poecilia_formosa
MGP_CAROLIEiJ_G0026487	Sfpq	69	98.347	ENSPPYG00000001560	SFPQ	68	98.954	Pongo_abelii
MGP_CAROLIEiJ_G0026487	Sfpq	77	98.368	ENSPCAG00000006164	SFPQ	77	98.368	Procavia_capensis
MGP_CAROLIEiJ_G0026487	Sfpq	69	98.347	ENSPCOG00000027127	SFPQ	68	98.954	Propithecus_coquereli
MGP_CAROLIEiJ_G0026487	Sfpq	96	90.963	ENSPVAG00000001865	SFPQ	85	93.132	Pteropus_vampyrus
MGP_CAROLIEiJ_G0026487	Sfpq	63	72.297	ENSPNYG00000007494	sfpq	62	72.624	Pundamilia_nyererei
MGP_CAROLIEiJ_G0026487	Sfpq	87	58.497	ENSPNAG00000002128	sfpq	73	72.973	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0026487	Sfpq	100	97.143	ENSRNOG00000058461	Sfpq	100	97.143	Rattus_norvegicus
MGP_CAROLIEiJ_G0026487	Sfpq	99	72.286	ENSRBIG00000035286	SFPQ	100	99.430	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0026487	Sfpq	68	100.000	ENSRROG00000040992	SFPQ	100	99.430	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0026487	Sfpq	50	99.430	ENSSBOG00000024972	-	100	99.430	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0026487	Sfpq	62	90.869	ENSSHAG00000016107	-	97	90.200	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0026487	Sfpq	50	91.453	ENSSHAG00000012312	-	100	90.883	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0026487	Sfpq	75	66.231	ENSSFOG00015009289	sfpq	79	77.778	Scleropages_formosus
MGP_CAROLIEiJ_G0026487	Sfpq	62	77.083	ENSSMAG00000018201	sfpq	66	73.982	Scophthalmus_maximus
MGP_CAROLIEiJ_G0026487	Sfpq	62	76.620	ENSSDUG00000008402	sfpq	65	78.291	Seriola_dumerili
MGP_CAROLIEiJ_G0026487	Sfpq	62	76.620	ENSSLDG00000018917	sfpq	65	78.291	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0026487	Sfpq	53	99.457	ENSSARG00000006409	SFPQ	100	99.457	Sorex_araneus
MGP_CAROLIEiJ_G0026487	Sfpq	85	94.807	ENSSSCG00000035690	SFPQ	85	94.807	Sus_scrofa
MGP_CAROLIEiJ_G0026487	Sfpq	62	94.896	ENSTGUG00000001722	SFPQ	100	94.896	Taeniopygia_guttata
MGP_CAROLIEiJ_G0026487	Sfpq	62	75.402	ENSTRUG00000003783	sfpq	62	76.092	Takifugu_rubripes
MGP_CAROLIEiJ_G0026487	Sfpq	62	76.484	ENSTNIG00000011331	sfpq	72	76.027	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0026487	Sfpq	85	90.787	ENSTTRG00000013930	SFPQ	96	87.021	Tursiops_truncatus
MGP_CAROLIEiJ_G0026487	Sfpq	50	98.374	ENSUAMG00000026758	SFPQ	85	98.374	Ursus_americanus
MGP_CAROLIEiJ_G0026487	Sfpq	50	96.581	ENSUMAG00000008056	-	100	96.581	Ursus_maritimus
MGP_CAROLIEiJ_G0026487	Sfpq	63	88.964	ENSVPAG00000006960	-	67	88.964	Vicugna_pacos
MGP_CAROLIEiJ_G0026487	Sfpq	50	88.319	ENSVVUG00000000874	-	100	88.319	Vulpes_vulpes
MGP_CAROLIEiJ_G0026487	Sfpq	65	79.957	ENSXETG00000009682	sfpq	100	84.830	Xenopus_tropicalis