EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0026857 (Gene tree)
Gene ID: 110292339
Gene Symbol: Chd5
Alias: 4930532L22Rik|B230399N07Rik
Full Name: chromodomain helicase DNA binding protein 5
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 52423 bases
Position: chr4:142237766-142290188
Accession: 110292339
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0066092	ResIII	PF04851.15	2.4e-07	1	1
MGP_CAROLIEiJ_P0066093	ResIII	PF04851.15	2.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0066095	-	6258	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0066094	-	280	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0066093	-	9184	XM_021159625	MGP_CAROLIEiJ_P0066093	1949 (aa)	XP_021015284	UPI000A3198A1
MGP_CAROLIEiJ_T0066092	-	9125	-	MGP_CAROLIEiJ_P0066092	1943 (aa)	XP_021015287	UPI000A316788

Gene Model

Click here to download MGP_CAROLIEiJ_G0026857's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0026857's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0026857	Chd5	96	69.651	MGP_CAROLIEiJ_G0016564	Chd3	98	68.437

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0026857	Chd5	100	94.575	ENSG00000116254	CHD5	100	94.575	Homo_sapiens
MGP_CAROLIEiJ_G0026857	Chd5	99	93.980	ENSAMEG00000009880	CHD5	99	93.971	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0026857	Chd5	96	77.653	ENSACIG00000012582	chd5	99	76.976	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0026857	Chd5	96	78.519	ENSAOCG00000020356	chd5	93	77.847	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0026857	Chd5	95	80.137	ENSAPLG00000015475	CHD5	98	80.254	Anas_platyrhynchos
MGP_CAROLIEiJ_G0026857	Chd5	99	83.077	ENSACAG00000002441	CHD5	96	84.066	Anolis_carolinensis
MGP_CAROLIEiJ_G0026857	Chd5	87	94.973	ENSANAG00000001078	CHD5	91	94.973	Aotus_nancymaae
MGP_CAROLIEiJ_G0026857	Chd5	96	74.468	ENSACLG00000003012	chd5	99	73.957	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0026857	Chd5	84	85.714	ENSAMXG00000008921	chd5	94	85.200	Astyanax_mexicanus
MGP_CAROLIEiJ_G0026857	Chd5	93	95.820	ENSBTAG00000040477	CHD5	100	95.820	Bos_taurus
MGP_CAROLIEiJ_G0026857	Chd5	100	94.422	ENSCJAG00000000101	CHD5	100	94.422	Callithrix_jacchus
MGP_CAROLIEiJ_G0026857	Chd5	93	95.707	ENSCAFG00000019545	CHD5	100	95.707	Canis_familiaris
MGP_CAROLIEiJ_G0026857	Chd5	99	94.826	ENSCAFG00020008689	CHD5	97	94.826	Canis_lupus_dingo
MGP_CAROLIEiJ_G0026857	Chd5	99	94.054	ENSCHIG00000015027	CHD5	97	94.054	Capra_hircus
MGP_CAROLIEiJ_G0026857	Chd5	98	89.892	ENSTSYG00000033991	CHD5	99	90.407	Carlito_syrichta
MGP_CAROLIEiJ_G0026857	Chd5	99	94.655	ENSCAPG00000009294	CHD5	99	94.649	Cavia_aperea
MGP_CAROLIEiJ_G0026857	Chd5	99	94.655	ENSCPOG00000025080	CHD5	99	94.649	Cavia_porcellus
MGP_CAROLIEiJ_G0026857	Chd5	100	94.524	ENSCCAG00000024756	CHD5	100	94.524	Cebus_capucinus
MGP_CAROLIEiJ_G0026857	Chd5	100	93.910	ENSCATG00000043011	CHD5	100	93.910	Cercocebus_atys
MGP_CAROLIEiJ_G0026857	Chd5	99	94.650	ENSCLAG00000010589	CHD5	100	93.724	Chinchilla_lanigera
MGP_CAROLIEiJ_G0026857	Chd5	100	94.933	ENSCSAG00000000733	CHD5	100	94.933	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0026857	Chd5	93	89.523	ENSCPBG00000019363	CHD5	100	89.413	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0026857	Chd5	99	94.920	ENSCANG00000032302	CHD5	99	94.909	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0026857	Chd5	55	98.491	ENSCGRG00001011042	Chd5	100	98.491	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0026857	Chd5	99	97.352	ENSCGRG00000011341	Chd5	99	97.352	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0026857	Chd5	96	77.465	ENSDARG00000105083	chd5	97	78.813	Danio_rerio
MGP_CAROLIEiJ_G0026857	Chd5	95	66.459	ENSDARG00000025789	chd4b	96	67.028	Danio_rerio
MGP_CAROLIEiJ_G0026857	Chd5	100	90.537	ENSDNOG00000046342	CHD5	100	90.225	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0026857	Chd5	99	94.816	ENSDORG00000005923	Chd5	99	94.811	Dipodomys_ordii
MGP_CAROLIEiJ_G0026857	Chd5	99	93.439	ENSEASG00005021464	CHD5	98	93.433	Equus_asinus_asinus
MGP_CAROLIEiJ_G0026857	Chd5	99	92.748	ENSECAG00000025043	CHD5	98	97.581	Equus_caballus
MGP_CAROLIEiJ_G0026857	Chd5	76	99.535	ENSEEUG00000002772	CHD5	77	99.535	Erinaceus_europaeus
MGP_CAROLIEiJ_G0026857	Chd5	93	76.009	ENSELUG00000010742	chd5	90	91.163	Esox_lucius
MGP_CAROLIEiJ_G0026857	Chd5	100	94.422	ENSFCAG00000006319	CHD5	100	94.422	Felis_catus
MGP_CAROLIEiJ_G0026857	Chd5	99	87.971	ENSFALG00000009740	CHD5	99	87.384	Ficedula_albicollis
MGP_CAROLIEiJ_G0026857	Chd5	99	94.465	ENSFDAG00000012881	CHD5	96	94.373	Fukomys_damarensis
MGP_CAROLIEiJ_G0026857	Chd5	100	86.429	ENSGALG00000000747	CHD5	100	86.531	Gallus_gallus
MGP_CAROLIEiJ_G0026857	Chd5	56	82.509	ENSGACG00000004389	chd5	93	82.633	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0026857	Chd5	96	87.500	ENSGAGG00000001590	CHD5	99	95.122	Gopherus_agassizii
MGP_CAROLIEiJ_G0026857	Chd5	99	94.603	ENSGGOG00000000708	CHD5	99	94.597	Gorilla_gorilla
MGP_CAROLIEiJ_G0026857	Chd5	96	76.081	ENSHBUG00000013453	chd5	99	75.610	Haplochromis_burtoni
MGP_CAROLIEiJ_G0026857	Chd5	100	94.626	ENSHGLG00000018184	CHD5	100	94.626	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0026857	Chd5	99	88.388	ENSHGLG00100013261	CHD5	98	87.448	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0026857	Chd5	94	77.850	ENSIPUG00000005446	chd5	98	78.420	Ictalurus_punctatus
MGP_CAROLIEiJ_G0026857	Chd5	99	94.387	ENSSTOG00000002778	CHD5	100	94.139	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0026857	Chd5	100	95.597	ENSJJAG00000019072	Chd5	100	95.545	Jaculus_jaculus
MGP_CAROLIEiJ_G0026857	Chd5	96	81.204	ENSLOCG00000004944	chd5	94	81.078	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0026857	Chd5	99	95.119	ENSLAFG00000006348	CHD5	99	95.112	Loxodonta_africana
MGP_CAROLIEiJ_G0026857	Chd5	99	94.715	ENSMFAG00000033993	CHD5	100	95.432	Macaca_fascicularis
MGP_CAROLIEiJ_G0026857	Chd5	99	94.813	ENSMMUG00000016838	CHD5	99	94.805	Macaca_mulatta
MGP_CAROLIEiJ_G0026857	Chd5	100	94.882	ENSMNEG00000040044	CHD5	100	94.882	Macaca_nemestrina
MGP_CAROLIEiJ_G0026857	Chd5	99	91.500	ENSMLEG00000039166	CHD5	99	91.492	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0026857	Chd5	96	74.788	ENSMZEG00005000841	chd5	99	73.491	Maylandia_zebra
MGP_CAROLIEiJ_G0026857	Chd5	99	86.687	ENSMGAG00000001055	CHD5	99	86.585	Meleagris_gallopavo
MGP_CAROLIEiJ_G0026857	Chd5	100	91.347	ENSMICG00000017862	CHD5	100	91.961	Microcebus_murinus
MGP_CAROLIEiJ_G0026857	Chd5	100	97.691	ENSMOCG00000011049	Chd5	100	97.691	Microtus_ochrogaster
MGP_CAROLIEiJ_G0026857	Chd5	91	79.814	ENSMODG00000006294	CHD5	78	93.649	Monodelphis_domestica
MGP_CAROLIEiJ_G0026857	Chd5	96	77.667	ENSMALG00000002831	chd5	99	76.681	Monopterus_albus
MGP_CAROLIEiJ_G0026857	Chd5	100	99.436	ENSMUSG00000005045	Chd5	100	99.436	Mus_musculus
MGP_CAROLIEiJ_G0026857	Chd5	100	99.436	MGP_PahariEiJ_G0029205	Chd5	100	99.436	Mus_pahari
MGP_CAROLIEiJ_G0026857	Chd5	100	99.692	MGP_SPRETEiJ_G0027850	Chd5	100	99.692	Mus_spretus
MGP_CAROLIEiJ_G0026857	Chd5	99	88.939	ENSMPUG00000007122	CHD5	99	89.572	Mustela_putorius_furo
MGP_CAROLIEiJ_G0026857	Chd5	99	95.322	ENSNGAG00000019812	Chd5	96	95.362	Nannospalax_galili
MGP_CAROLIEiJ_G0026857	Chd5	99	92.280	ENSNLEG00000010320	CHD5	99	92.104	Nomascus_leucogenys
MGP_CAROLIEiJ_G0026857	Chd5	86	87.018	ENSOPRG00000004304	CHD5	87	87.018	Ochotona_princeps
MGP_CAROLIEiJ_G0026857	Chd5	99	94.444	ENSODEG00000010262	CHD5	99	94.439	Octodon_degus
MGP_CAROLIEiJ_G0026857	Chd5	93	77.134	ENSONIG00000000619	chd5	96	76.535	Oreochromis_niloticus
MGP_CAROLIEiJ_G0026857	Chd5	96	71.369	ENSOANG00000001819	CHD5	98	71.317	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0026857	Chd5	99	92.473	ENSOGAG00000005703	CHD5	99	93.088	Otolemur_garnettii
MGP_CAROLIEiJ_G0026857	Chd5	99	93.261	ENSOARG00000013425	CHD5	99	93.295	Ovis_aries
MGP_CAROLIEiJ_G0026857	Chd5	99	94.554	ENSPPAG00000034048	CHD5	99	94.548	Pan_paniscus
MGP_CAROLIEiJ_G0026857	Chd5	100	93.910	ENSPPRG00000009453	CHD5	100	93.910	Panthera_pardus
MGP_CAROLIEiJ_G0026857	Chd5	99	86.799	ENSPTIG00000013926	CHD5	99	86.963	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0026857	Chd5	100	94.527	ENSPTRG00000000075	CHD5	100	94.527	Pan_troglodytes
MGP_CAROLIEiJ_G0026857	Chd5	100	94.933	ENSPANG00000006765	CHD5	100	94.933	Papio_anubis
MGP_CAROLIEiJ_G0026857	Chd5	95	78.118	ENSPKIG00000004282	chd5	98	77.573	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0026857	Chd5	93	82.573	ENSPSIG00000006414	CHD5	99	82.609	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0026857	Chd5	69	97.821	ENSPEMG00000014799	Chd5	100	97.821	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0026857	Chd5	99	90.543	ENSPCIG00000028310	CHD5	100	89.214	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0026857	Chd5	96	75.670	ENSPLAG00000005343	chd5	99	75.274	Poecilia_latipinna
MGP_CAROLIEiJ_G0026857	Chd5	99	91.008	ENSPPYG00000001952	CHD5	99	91.623	Pongo_abelii
MGP_CAROLIEiJ_G0026857	Chd5	100	94.422	ENSPCOG00000022930	CHD5	100	95.036	Propithecus_coquereli
MGP_CAROLIEiJ_G0026857	Chd5	96	77.926	ENSPNYG00000003183	chd5	99	77.008	Pundamilia_nyererei
MGP_CAROLIEiJ_G0026857	Chd5	100	98.769	ENSRNOG00000011268	Chd5	100	98.769	Rattus_norvegicus
MGP_CAROLIEiJ_G0026857	Chd5	94	96.334	ENSRBIG00000032140	CHD5	95	96.334	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0026857	Chd5	99	94.914	ENSRROG00000041146	CHD5	99	94.909	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0026857	Chd5	100	88.509	ENSSBOG00000001955	CHD5	100	95.252	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0026857	Chd5	96	85.216	ENSSHAG00000018641	CHD5	99	85.246	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0026857	Chd5	97	77.401	ENSSFOG00015006296	chd5	90	92.093	Scleropages_formosus
MGP_CAROLIEiJ_G0026857	Chd5	93	78.400	ENSSDUG00000017526	chd5	92	90.367	Seriola_dumerili
MGP_CAROLIEiJ_G0026857	Chd5	97	80.715	ENSSPUG00000010622	CHD5	98	80.525	Sphenodon_punctatus
MGP_CAROLIEiJ_G0026857	Chd5	100	94.567	ENSSSCG00000003366	CHD5	100	95.652	Sus_scrofa
MGP_CAROLIEiJ_G0026857	Chd5	93	82.774	ENSTGUG00000002634	-	100	82.746	Taeniopygia_guttata
MGP_CAROLIEiJ_G0026857	Chd5	52	80.607	ENSTNIG00000004346	chd5	99	80.747	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0026857	Chd5	100	92.729	ENSTTRG00000010468	CHD5	100	92.985	Tursiops_truncatus
MGP_CAROLIEiJ_G0026857	Chd5	98	94.817	ENSUAMG00000024509	CHD5	98	94.450	Ursus_americanus
MGP_CAROLIEiJ_G0026857	Chd5	98	89.733	ENSUMAG00000024173	CHD5	98	90.112	Ursus_maritimus
MGP_CAROLIEiJ_G0026857	Chd5	99	93.018	ENSVVUG00000026480	CHD5	99	92.916	Vulpes_vulpes
MGP_CAROLIEiJ_G0026857	Chd5	96	78.601	ENSXETG00000002904	chd5	99	78.068	Xenopus_tropicalis
MGP_CAROLIEiJ_G0026857	Chd5	58	83.871	ENSXCOG00000014202	chd5	99	83.871	Xiphophorus_couchianus