EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0026864 (Gene tree)
Gene ID: 110292990
Gene Symbol: Lrrc47
Alias: 2900010D03Rik
Full Name: leucine rich repeat containing 47
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 9970 bases
Position: chr4:143916148-143926117
Accession: 110292990
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0066134	B3_4	PF03483.17	1.1e-09	1	1
MGP_CAROLIEiJ_P0066133	B3_4	PF03483.17	1.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0066136	-	852	-	MGP_CAROLIEiJ_P0066136	122 (aa)	-	-
MGP_CAROLIEiJ_T0066137	-	481	-	MGP_CAROLIEiJ_P0066137	78 (aa)	-	-
MGP_CAROLIEiJ_T0066134	-	3302	-	MGP_CAROLIEiJ_P0066134	581 (aa)	XP_021016374	UPI000A31ADB9
MGP_CAROLIEiJ_T0066135	-	378	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0066133	-	3375	-	MGP_CAROLIEiJ_P0066133	603 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0026864's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0026864's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0026864	Lrrc47	99	86.082	ENSG00000130764	LRRC47	99	86.851	Homo_sapiens
MGP_CAROLIEiJ_G0026864	Lrrc47	97	54.401	ENSAPOG00000019553	lrrc47	98	54.770	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0026864	Lrrc47	79	76.304	ENSAMEG00000009152	LRRC47	100	76.304	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0026864	Lrrc47	66	67.617	ENSAPLG00000003167	LRRC47	100	67.358	Anas_platyrhynchos
MGP_CAROLIEiJ_G0026864	Lrrc47	65	65.354	ENSACAG00000008267	LRRC47	99	65.789	Anolis_carolinensis
MGP_CAROLIEiJ_G0026864	Lrrc47	99	84.880	ENSANAG00000025576	LRRC47	99	85.640	Aotus_nancymaae
MGP_CAROLIEiJ_G0026864	Lrrc47	99	81.944	ENSBTAG00000004738	LRRC47	99	82.639	Bos_taurus
MGP_CAROLIEiJ_G0026864	Lrrc47	98	80.696	ENSCAFG00000019492	LRRC47	94	80.755	Canis_familiaris
MGP_CAROLIEiJ_G0026864	Lrrc47	100	80.308	ENSCAFG00020009667	LRRC47	99	80.936	Canis_lupus_dingo
MGP_CAROLIEiJ_G0026864	Lrrc47	99	82.639	ENSCHIG00000022607	LRRC47	98	83.246	Capra_hircus
MGP_CAROLIEiJ_G0026864	Lrrc47	95	84.740	ENSTSYG00000009326	LRRC47	96	85.817	Carlito_syrichta
MGP_CAROLIEiJ_G0026864	Lrrc47	64	82.447	ENSCAPG00000016517	LRRC47	100	82.447	Cavia_aperea
MGP_CAROLIEiJ_G0026864	Lrrc47	99	86.379	ENSCPOG00000014931	LRRC47	100	84.463	Cavia_porcellus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	85.052	ENSCCAG00000024895	LRRC47	99	85.813	Cebus_capucinus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	87.285	ENSCATG00000029337	LRRC47	99	87.543	Cercocebus_atys
MGP_CAROLIEiJ_G0026864	Lrrc47	99	87.414	ENSCLAG00000006093	LRRC47	99	87.674	Chinchilla_lanigera
MGP_CAROLIEiJ_G0026864	Lrrc47	99	87.285	ENSCSAG00000000727	LRRC47	99	87.543	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	60.833	ENSCPBG00000019404	LRRC47	98	61.252	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0026864	Lrrc47	78	83.080	ENSCANG00000030701	LRRC47	96	84.816	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0026864	Lrrc47	98	93.357	ENSCGRG00001015159	Lrrc47	93	91.751	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0026864	Lrrc47	65	91.247	ENSCGRG00000017336	Lrrc47	100	91.444	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0026864	Lrrc47	99	53.012	ENSCSEG00000006217	lrrc47	95	53.472	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0026864	Lrrc47	64	81.117	ENSDORG00000016594	Lrrc47	99	81.117	Dipodomys_ordii
MGP_CAROLIEiJ_G0026864	Lrrc47	99	82.818	ENSEASG00005021788	LRRC47	99	82.872	Equus_asinus_asinus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	82.526	ENSECAG00000022472	LRRC47	90	82.526	Equus_caballus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	52.115	ENSELUG00000017544	lrrc47	97	52.740	Esox_lucius
MGP_CAROLIEiJ_G0026864	Lrrc47	94	81.536	ENSFCAG00000011632	LRRC47	96	82.450	Felis_catus
MGP_CAROLIEiJ_G0026864	Lrrc47	73	64.965	ENSFALG00000009631	LRRC47	99	65.138	Ficedula_albicollis
MGP_CAROLIEiJ_G0026864	Lrrc47	97	51.767	ENSGMOG00000015674	lrrc47	97	52.557	Gadus_morhua
MGP_CAROLIEiJ_G0026864	Lrrc47	99	61.552	ENSGALG00000050995	LRRC47	100	62.586	Gallus_gallus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	53.713	ENSGACG00000005550	lrrc47	99	54.101	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	63.272	ENSGAGG00000022584	LRRC47	99	63.406	Gopherus_agassizii
MGP_CAROLIEiJ_G0026864	Lrrc47	99	86.082	ENSGGOG00000015571	LRRC47	99	86.851	Gorilla_gorilla
MGP_CAROLIEiJ_G0026864	Lrrc47	99	85.345	ENSHGLG00000018278	LRRC47	100	83.636	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0026864	Lrrc47	69	81.886	ENSHGLG00100008507	LRRC47	100	81.886	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0026864	Lrrc47	99	54.419	ENSHCOG00000006348	lrrc47	97	53.899	Hippocampus_comes
MGP_CAROLIEiJ_G0026864	Lrrc47	99	85.345	ENSSTOG00000027559	LRRC47	99	87.153	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	88.000	ENSJJAG00000017474	Lrrc47	99	87.140	Jaculus_jaculus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	54.217	ENSKMAG00000003414	lrrc47	99	54.167	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	80.822	ENSLAFG00000011657	LRRC47	99	82.526	Loxodonta_africana
MGP_CAROLIEiJ_G0026864	Lrrc47	74	95.122	ENSMFAG00000045730	LRRC47	89	95.522	Macaca_fascicularis
MGP_CAROLIEiJ_G0026864	Lrrc47	99	87.716	ENSMNEG00000042488	LRRC47	99	87.716	Macaca_nemestrina
MGP_CAROLIEiJ_G0026864	Lrrc47	76	81.596	ENSMLEG00000043735	LRRC47	98	79.261	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	93.750	ENSMAUG00000021337	Lrrc47	99	92.617	Mesocricetus_auratus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	84.854	ENSMICG00000026816	LRRC47	99	84.922	Microcebus_murinus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	94.291	ENSMOCG00000021279	Lrrc47	99	94.425	Microtus_ochrogaster
MGP_CAROLIEiJ_G0026864	Lrrc47	99	52.941	ENSMMOG00000017007	lrrc47	99	53.217	Mola_mola
MGP_CAROLIEiJ_G0026864	Lrrc47	98	70.804	ENSMODG00000006554	LRRC47	98	70.804	Monodelphis_domestica
MGP_CAROLIEiJ_G0026864	Lrrc47	100	99.337	ENSMUSG00000029028	Lrrc47	100	99.337	Mus_musculus
MGP_CAROLIEiJ_G0026864	Lrrc47	100	98.451	MGP_PahariEiJ_G0029212	Lrrc47	100	98.451	Mus_pahari
MGP_CAROLIEiJ_G0026864	Lrrc47	100	99.172	MGP_SPRETEiJ_G0027857	Lrrc47	100	99.172	Mus_spretus
MGP_CAROLIEiJ_G0026864	Lrrc47	65	74.603	ENSMPUG00000007321	LRRC47	75	74.603	Mustela_putorius_furo
MGP_CAROLIEiJ_G0026864	Lrrc47	98	90.702	ENSNGAG00000022153	Lrrc47	99	91.289	Nannospalax_galili
MGP_CAROLIEiJ_G0026864	Lrrc47	99	82.302	ENSNLEG00000008131	LRRC47	99	83.045	Nomascus_leucogenys
MGP_CAROLIEiJ_G0026864	Lrrc47	84	84.254	ENSODEG00000010882	LRRC47	93	84.254	Octodon_degus
MGP_CAROLIEiJ_G0026864	Lrrc47	96	56.661	ENSORLG00000002532	lrrc47	99	56.553	Oryzias_latipes
MGP_CAROLIEiJ_G0026864	Lrrc47	99	56.627	ENSORLG00020019601	lrrc47	99	56.522	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0026864	Lrrc47	99	56.110	ENSORLG00015014040	lrrc47	99	56.000	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0026864	Lrrc47	99	55.363	ENSOMEG00000008989	lrrc47	99	55.478	Oryzias_melastigma
MGP_CAROLIEiJ_G0026864	Lrrc47	99	84.192	ENSOGAG00000001553	LRRC47	99	83.910	Otolemur_garnettii
MGP_CAROLIEiJ_G0026864	Lrrc47	99	78.819	ENSOARG00000015290	LRRC47	99	79.514	Ovis_aries
MGP_CAROLIEiJ_G0026864	Lrrc47	97	82.436	ENSPPAG00000036370	-	99	83.372	Pan_paniscus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	80.589	ENSPPRG00000005261	LRRC47	98	81.629	Panthera_pardus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	86.082	ENSPTRG00000000068	LRRC47	99	86.851	Pan_troglodytes
MGP_CAROLIEiJ_G0026864	Lrrc47	99	87.285	ENSPANG00000012437	LRRC47	99	87.543	Papio_anubis
MGP_CAROLIEiJ_G0026864	Lrrc47	65	65.699	ENSPSIG00000004196	LRRC47	100	65.699	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0026864	Lrrc47	64	95.187	ENSPEMG00000021068	Lrrc47	100	95.187	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0026864	Lrrc47	98	71.979	ENSPCIG00000003638	LRRC47	98	73.647	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0026864	Lrrc47	90	56.430	ENSPFOG00000000992	lrrc47	90	56.538	Poecilia_formosa
MGP_CAROLIEiJ_G0026864	Lrrc47	99	55.035	ENSPLAG00000008077	lrrc47	99	55.130	Poecilia_latipinna
MGP_CAROLIEiJ_G0026864	Lrrc47	99	54.957	ENSPMEG00000007367	lrrc47	99	55.130	Poecilia_mexicana
MGP_CAROLIEiJ_G0026864	Lrrc47	99	85.911	ENSPPYG00000001960	LRRC47	99	86.678	Pongo_abelii
MGP_CAROLIEiJ_G0026864	Lrrc47	99	85.442	ENSPCOG00000019161	LRRC47	99	85.442	Propithecus_coquereli
MGP_CAROLIEiJ_G0026864	Lrrc47	99	80.241	ENSPVAG00000009839	LRRC47	99	81.315	Pteropus_vampyrus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	54.202	ENSPNAG00000017982	lrrc47	98	54.435	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0026864	Lrrc47	99	96.028	ENSRNOG00000024796	Lrrc47	99	95.993	Rattus_norvegicus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	87.285	ENSRBIG00000019437	LRRC47	99	87.543	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0026864	Lrrc47	99	87.285	ENSRROG00000043182	LRRC47	99	87.543	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0026864	Lrrc47	80	80.421	ENSSBOG00000026334	LRRC47	97	81.263	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0026864	Lrrc47	98	60.206	ENSSHAG00000007360	LRRC47	98	60.342	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0026864	Lrrc47	98	54.059	ENSSMAG00000009344	lrrc47	99	54.355	Scophthalmus_maximus
MGP_CAROLIEiJ_G0026864	Lrrc47	97	54.610	ENSSDUG00000014618	lrrc47	97	54.965	Seriola_dumerili
MGP_CAROLIEiJ_G0026864	Lrrc47	97	54.787	ENSSLDG00000018908	lrrc47	97	54.787	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0026864	Lrrc47	100	61.345	ENSSPUG00000010277	LRRC47	96	62.544	Sphenodon_punctatus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	55.536	ENSSPAG00000005188	lrrc47	99	56.076	Stegastes_partitus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	80.756	ENSSSCG00000039516	LRRC47	99	81.834	Sus_scrofa
MGP_CAROLIEiJ_G0026864	Lrrc47	70	65.517	ENSTGUG00000002737	LRRC47	99	64.778	Taeniopygia_guttata
MGP_CAROLIEiJ_G0026864	Lrrc47	99	52.696	ENSTRUG00000017696	lrrc47	99	52.797	Takifugu_rubripes
MGP_CAROLIEiJ_G0026864	Lrrc47	99	52.431	ENSTNIG00000010923	lrrc47	99	52.622	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0026864	Lrrc47	99	81.100	ENSTTRG00000011751	LRRC47	99	82.038	Tursiops_truncatus
MGP_CAROLIEiJ_G0026864	Lrrc47	88	78.752	ENSUAMG00000012080	LRRC47	97	79.922	Ursus_americanus
MGP_CAROLIEiJ_G0026864	Lrrc47	65	72.703	ENSUMAG00000010781	LRRC47	81	74.278	Ursus_maritimus
MGP_CAROLIEiJ_G0026864	Lrrc47	99	72.619	ENSVVUG00000027118	LRRC47	98	71.453	Vulpes_vulpes
MGP_CAROLIEiJ_G0026864	Lrrc47	99	59.828	ENSXETG00000006029	lrrc47	99	59.758	Xenopus_tropicalis
MGP_CAROLIEiJ_G0026864	Lrrc47	98	55.088	ENSXCOG00000002813	lrrc47	98	55.088	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0026864	Lrrc47	98	54.895	ENSXMAG00000019386	lrrc47	99	55.672	Xiphophorus_maculatus