EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0027117 (Gene tree)
Gene ID: 110294679
Gene Symbol: Slbp
Alias: -
Full Name: stem-loop binding protein
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 17413 bases
Position: chr5:28588356-28605768
Accession: 110294679
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0067552	SLBP_RNA_bind	PF15247.6	2.7e-29	1	1
MGP_CAROLIEiJ_P0067547	SLBP_RNA_bind	PF15247.6	3.3e-29	1	1
MGP_CAROLIEiJ_P0067549	SLBP_RNA_bind	PF15247.6	3.9e-29	1	1
MGP_CAROLIEiJ_P0067548	SLBP_RNA_bind	PF15247.6	4.1e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0067547	-	1031	-	MGP_CAROLIEiJ_P0067547	250 (aa)	-	-
MGP_CAROLIEiJ_T0067553	-	2730	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0067552	-	1199	-	MGP_CAROLIEiJ_P0067552	221 (aa)	-	-
MGP_CAROLIEiJ_T0067551	-	1124	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0067550	-	823	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0067554	-	553	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0067548	-	1600	-	MGP_CAROLIEiJ_P0067548	275 (aa)	XP_021018724	UPI000A318503
MGP_CAROLIEiJ_T0067549	-	1592	-	MGP_CAROLIEiJ_P0067549	255 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0027117's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0027117's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0027117	Slbp	100	86.909	ENSG00000163950	SLBP	100	86.182	Homo_sapiens
MGP_CAROLIEiJ_G0027117	Slbp	83	59.296	ENSAPOG00000004953	slbp	90	51.362	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0027117	Slbp	79	94.009	ENSAMEG00000016915	SLBP	100	94.009	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0027117	Slbp	84	58.209	ENSACIG00000022308	slbp	94	51.020	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0027117	Slbp	83	57.000	ENSAOCG00000024545	slbp	76	55.556	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0027117	Slbp	83	57.000	ENSAPEG00000017629	slbp	90	49.225	Amphiprion_percula
MGP_CAROLIEiJ_G0027117	Slbp	83	59.500	ENSATEG00000016358	slbp	74	57.820	Anabas_testudineus
MGP_CAROLIEiJ_G0027117	Slbp	79	75.909	ENSAPLG00000015989	-	100	80.000	Anas_platyrhynchos
MGP_CAROLIEiJ_G0027117	Slbp	100	83.688	ENSANAG00000034769	SLBP	100	82.979	Aotus_nancymaae
MGP_CAROLIEiJ_G0027117	Slbp	90	55.660	ENSACLG00000007036	-	78	51.613	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0027117	Slbp	83	66.321	ENSAMXG00000014527	slbp	76	64.423	Astyanax_mexicanus
MGP_CAROLIEiJ_G0027117	Slbp	100	86.545	ENSBTAG00000001328	SLBP	100	86.545	Bos_taurus
MGP_CAROLIEiJ_G0027117	Slbp	100	82.624	ENSCJAG00000001790	SLBP	100	82.624	Callithrix_jacchus
MGP_CAROLIEiJ_G0027117	Slbp	100	88.000	ENSCAFG00000015016	SLBP	100	88.000	Canis_familiaris
MGP_CAROLIEiJ_G0027117	Slbp	100	88.000	ENSCAFG00020012334	SLBP	100	88.000	Canis_lupus_dingo
MGP_CAROLIEiJ_G0027117	Slbp	100	85.818	ENSCHIG00000019364	SLBP	100	85.818	Capra_hircus
MGP_CAROLIEiJ_G0027117	Slbp	100	87.636	ENSTSYG00000000376	SLBP	100	86.545	Carlito_syrichta
MGP_CAROLIEiJ_G0027117	Slbp	66	90.608	ENSCAPG00000016340	SLBP	100	90.608	Cavia_aperea
MGP_CAROLIEiJ_G0027117	Slbp	100	86.380	ENSCPOG00000000031	SLBP	100	86.380	Cavia_porcellus
MGP_CAROLIEiJ_G0027117	Slbp	67	85.714	ENSCCAG00000026134	SLBP	87	83.810	Cebus_capucinus
MGP_CAROLIEiJ_G0027117	Slbp	100	86.909	ENSCATG00000029173	SLBP	100	86.182	Cercocebus_atys
MGP_CAROLIEiJ_G0027117	Slbp	100	86.182	ENSCLAG00000008157	SLBP	100	86.182	Chinchilla_lanigera
MGP_CAROLIEiJ_G0027117	Slbp	100	72.500	ENSCSAG00000015628	SLBP	100	72.500	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0027117	Slbp	100	69.858	ENSCPBG00000000746	SLBP	100	71.986	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0027117	Slbp	79	89.815	ENSCANG00000041008	SLBP	100	88.889	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0027117	Slbp	100	95.273	ENSCGRG00001009760	-	100	95.273	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0027117	Slbp	100	92.000	ENSCGRG00001012991	-	100	92.000	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0027117	Slbp	100	95.273	ENSCGRG00000004506	Slbp	100	95.273	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0027117	Slbp	83	60.622	ENSCSEG00000020337	-	78	56.364	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0027117	Slbp	90	53.425	ENSCVAG00000019592	-	76	55.610	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0027117	Slbp	89	62.376	ENSDARG00000100558	slbp	68	62.857	Danio_rerio
MGP_CAROLIEiJ_G0027117	Slbp	100	78.092	ENSDNOG00000047539	SLBP	100	78.092	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0027117	Slbp	79	92.130	ENSDORG00000003028	Slbp	100	92.130	Dipodomys_ordii
MGP_CAROLIEiJ_G0027117	Slbp	95	80.751	ENSETEG00000004641	SLBP	99	80.753	Echinops_telfairi
MGP_CAROLIEiJ_G0027117	Slbp	70	93.750	ENSEASG00005022714	SLBP	100	93.750	Equus_asinus_asinus
MGP_CAROLIEiJ_G0027117	Slbp	98	88.426	ENSECAG00000011689	SLBP	71	88.426	Equus_caballus
MGP_CAROLIEiJ_G0027117	Slbp	86	58.209	ENSELUG00000012854	slbp	92	48.846	Esox_lucius
MGP_CAROLIEiJ_G0027117	Slbp	100	89.455	ENSFCAG00000000169	SLBP	100	89.455	Felis_catus
MGP_CAROLIEiJ_G0027117	Slbp	100	69.751	ENSFALG00000010003	-	100	69.395	Ficedula_albicollis
MGP_CAROLIEiJ_G0027117	Slbp	92	90.514	ENSFDAG00000007592	SLBP	99	90.514	Fukomys_damarensis
MGP_CAROLIEiJ_G0027117	Slbp	81	58.511	ENSFHEG00000007497	slbp	77	51.442	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0027117	Slbp	66	71.333	ENSGMOG00000015352	slbp	96	71.333	Gadus_morhua
MGP_CAROLIEiJ_G0027117	Slbp	100	69.395	ENSGALG00000015712	SLBP	100	71.530	Gallus_gallus
MGP_CAROLIEiJ_G0027117	Slbp	82	60.847	ENSGAFG00000019577	slbp	80	55.924	Gambusia_affinis
MGP_CAROLIEiJ_G0027117	Slbp	83	57.653	ENSGACG00000019596	slbp	93	49.796	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0027117	Slbp	95	68.981	ENSGAGG00000012096	SLBP	91	72.687	Gopherus_agassizii
MGP_CAROLIEiJ_G0027117	Slbp	100	86.909	ENSGGOG00000003167	SLBP	100	86.182	Gorilla_gorilla
MGP_CAROLIEiJ_G0027117	Slbp	90	54.884	ENSHBUG00000003338	-	78	51.613	Haplochromis_burtoni
MGP_CAROLIEiJ_G0027117	Slbp	84	84.475	ENSHGLG00000010461	-	96	84.483	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0027117	Slbp	100	76.863	ENSHGLG00000005955	-	100	76.863	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0027117	Slbp	89	85.526	ENSHGLG00000008313	-	100	81.961	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0027117	Slbp	89	86.404	ENSHGLG00100010510	-	100	82.745	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0027117	Slbp	84	84.475	ENSHGLG00100014906	-	96	84.483	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0027117	Slbp	100	88.364	ENSHGLG00100014018	-	100	88.364	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0027117	Slbp	86	58.163	ENSHCOG00000013425	slbp	90	50.806	Hippocampus_comes
MGP_CAROLIEiJ_G0027117	Slbp	83	67.368	ENSIPUG00000016780	slbp	74	67.172	Ictalurus_punctatus
MGP_CAROLIEiJ_G0027117	Slbp	100	91.636	ENSSTOG00000003262	SLBP	100	91.636	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0027117	Slbp	100	91.636	ENSJJAG00000020549	-	100	91.636	Jaculus_jaculus
MGP_CAROLIEiJ_G0027117	Slbp	100	90.545	ENSJJAG00000002394	-	100	90.545	Jaculus_jaculus
MGP_CAROLIEiJ_G0027117	Slbp	82	58.031	ENSKMAG00000008187	slbp	77	53.670	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0027117	Slbp	89	57.212	ENSLBEG00000024709	slbp	90	48.400	Labrus_bergylta
MGP_CAROLIEiJ_G0027117	Slbp	92	59.447	ENSLACG00000014623	SLBP	97	56.089	Latimeria_chalumnae
MGP_CAROLIEiJ_G0027117	Slbp	86	60.199	ENSLOCG00000011027	slbp	93	52.158	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0027117	Slbp	95	84.362	ENSLAFG00000012933	SLBP	99	85.837	Loxodonta_africana
MGP_CAROLIEiJ_G0027117	Slbp	91	87.649	ENSMFAG00000030130	SLBP	95	73.930	Macaca_fascicularis
MGP_CAROLIEiJ_G0027117	Slbp	93	85.115	ENSMMUG00000032303	SLBP	96	89.401	Macaca_mulatta
MGP_CAROLIEiJ_G0027117	Slbp	100	67.730	ENSMNEG00000008082	SLBP	100	67.021	Macaca_nemestrina
MGP_CAROLIEiJ_G0027117	Slbp	93	79.608	ENSMLEG00000024639	SLBP	98	78.824	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0027117	Slbp	83	54.726	ENSMAMG00000001046	-	90	48.047	Mastacembelus_armatus
MGP_CAROLIEiJ_G0027117	Slbp	90	54.884	ENSMZEG00005017261	-	78	51.613	Maylandia_zebra
MGP_CAROLIEiJ_G0027117	Slbp	79	76.959	ENSMGAG00000013085	SLBP	100	78.802	Meleagris_gallopavo
MGP_CAROLIEiJ_G0027117	Slbp	100	95.273	ENSMAUG00000009490	Slbp	100	95.273	Mesocricetus_auratus
MGP_CAROLIEiJ_G0027117	Slbp	100	86.545	ENSMICG00000014244	SLBP	100	85.455	Microcebus_murinus
MGP_CAROLIEiJ_G0027117	Slbp	100	94.909	ENSMOCG00000015826	Slbp	100	95.794	Microtus_ochrogaster
MGP_CAROLIEiJ_G0027117	Slbp	89	56.000	ENSMMOG00000010181	slbp	93	50.847	Mola_mola
MGP_CAROLIEiJ_G0027117	Slbp	93	81.609	ENSMODG00000004304	SLBP	100	81.609	Monodelphis_domestica
MGP_CAROLIEiJ_G0027117	Slbp	80	57.732	ENSMALG00000013883	-	56	54.167	Monopterus_albus
MGP_CAROLIEiJ_G0027117	Slbp	100	99.636	ENSMUSG00000004642	Slbp	100	99.636	Mus_musculus
MGP_CAROLIEiJ_G0027117	Slbp	100	99.636	MGP_PahariEiJ_G0016901	Slbp	100	99.636	Mus_pahari
MGP_CAROLIEiJ_G0027117	Slbp	100	99.636	MGP_SPRETEiJ_G0028113	Slbp	100	99.636	Mus_spretus
MGP_CAROLIEiJ_G0027117	Slbp	67	91.848	ENSMPUG00000011139	SLBP	94	91.848	Mustela_putorius_furo
MGP_CAROLIEiJ_G0027117	Slbp	79	87.615	ENSMLUG00000004425	SLBP	93	87.615	Myotis_lucifugus
MGP_CAROLIEiJ_G0027117	Slbp	100	89.818	ENSNGAG00000020799	Slbp	100	89.818	Nannospalax_galili
MGP_CAROLIEiJ_G0027117	Slbp	95	53.571	ENSNBRG00000006044	-	87	52.174	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0027117	Slbp	100	84.752	ENSNLEG00000000048	SLBP	100	84.043	Nomascus_leucogenys
MGP_CAROLIEiJ_G0027117	Slbp	71	87.640	ENSMEUG00000002501	SLBP	100	87.640	Notamacropus_eugenii
MGP_CAROLIEiJ_G0027117	Slbp	100	86.182	ENSODEG00000012641	SLBP	100	86.182	Octodon_degus
MGP_CAROLIEiJ_G0027117	Slbp	90	54.884	ENSONIG00000017469	-	78	51.613	Oreochromis_niloticus
MGP_CAROLIEiJ_G0027117	Slbp	79	83.871	ENSOANG00000014243	SLBP	95	85.714	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0027117	Slbp	82	59.788	ENSORLG00000024887	-	89	48.750	Oryzias_latipes
MGP_CAROLIEiJ_G0027117	Slbp	82	59.259	ENSORLG00020007798	slbp	89	48.333	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0027117	Slbp	82	59.259	ENSORLG00015016656	slbp	89	48.333	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0027117	Slbp	86	57.789	ENSOMEG00000010818	slbp	90	49.388	Oryzias_melastigma
MGP_CAROLIEiJ_G0027117	Slbp	100	86.545	ENSOGAG00000009750	SLBP	100	85.818	Otolemur_garnettii
MGP_CAROLIEiJ_G0027117	Slbp	79	91.705	ENSOARG00000016090	SLBP	100	91.705	Ovis_aries
MGP_CAROLIEiJ_G0027117	Slbp	100	86.545	ENSPPAG00000033300	SLBP	100	85.818	Pan_paniscus
MGP_CAROLIEiJ_G0027117	Slbp	91	90.000	ENSPPRG00000016897	SLBP	100	90.000	Panthera_pardus
MGP_CAROLIEiJ_G0027117	Slbp	70	93.750	ENSPTIG00000015057	SLBP	100	93.750	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0027117	Slbp	100	86.182	ENSPTRG00000015832	SLBP	100	85.455	Pan_troglodytes
MGP_CAROLIEiJ_G0027117	Slbp	100	83.099	ENSPANG00000004932	SLBP	100	82.394	Papio_anubis
MGP_CAROLIEiJ_G0027117	Slbp	86	61.026	ENSPKIG00000006183	slbp	93	52.206	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0027117	Slbp	86	55.072	ENSPMGG00000017684	-	98	55.051	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0027117	Slbp	100	95.636	ENSPEMG00000018369	Slbp	100	95.636	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0027117	Slbp	100	75.932	ENSPCIG00000013575	SLBP	86	75.932	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0027117	Slbp	82	60.317	ENSPFOG00000000462	slbp	76	55.924	Poecilia_formosa
MGP_CAROLIEiJ_G0027117	Slbp	82	60.317	ENSPLAG00000008300	slbp	81	54.206	Poecilia_latipinna
MGP_CAROLIEiJ_G0027117	Slbp	82	60.317	ENSPMEG00000020807	slbp	76	55.924	Poecilia_mexicana
MGP_CAROLIEiJ_G0027117	Slbp	82	60.317	ENSPREG00000004561	slbp	76	55.924	Poecilia_reticulata
MGP_CAROLIEiJ_G0027117	Slbp	100	87.273	ENSPPYG00000014529	SLBP	100	86.545	Pongo_abelii
MGP_CAROLIEiJ_G0027117	Slbp	100	88.000	ENSPCOG00000017399	SLBP	100	86.909	Propithecus_coquereli
MGP_CAROLIEiJ_G0027117	Slbp	100	81.818	ENSPVAG00000002807	SLBP	100	81.818	Pteropus_vampyrus
MGP_CAROLIEiJ_G0027117	Slbp	90	54.884	ENSPNYG00000005451	-	78	51.613	Pundamilia_nyererei
MGP_CAROLIEiJ_G0027117	Slbp	85	65.128	ENSPNAG00000018503	slbp	89	57.917	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0027117	Slbp	100	98.545	ENSRNOG00000037162	Slbp	100	98.545	Rattus_norvegicus
MGP_CAROLIEiJ_G0027117	Slbp	100	86.909	ENSRBIG00000039159	SLBP	100	86.182	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0027117	Slbp	95	86.590	ENSRROG00000030081	SLBP	96	85.824	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0027117	Slbp	70	90.104	ENSSBOG00000033897	SLBP	100	89.062	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0027117	Slbp	100	75.585	ENSSHAG00000013939	SLBP	100	75.585	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0027117	Slbp	88	61.650	ENSSFOG00015019429	slbp	96	52.060	Scleropages_formosus
MGP_CAROLIEiJ_G0027117	Slbp	86	54.327	ENSSMAG00000016028	-	82	50.213	Scophthalmus_maximus
MGP_CAROLIEiJ_G0027117	Slbp	83	59.896	ENSSDUG00000000855	-	77	55.869	Seriola_dumerili
MGP_CAROLIEiJ_G0027117	Slbp	62	53.691	ENSSLDG00000022893	-	86	54.795	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0027117	Slbp	90	40.385	ENSSLDG00000007554	-	70	41.148	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0027117	Slbp	96	68.939	ENSSPUG00000016007	SLBP	98	69.615	Sphenodon_punctatus
MGP_CAROLIEiJ_G0027117	Slbp	83	59.596	ENSSPAG00000004021	slbp	82	57.477	Stegastes_partitus
MGP_CAROLIEiJ_G0027117	Slbp	100	85.455	ENSSSCG00000008676	SLBP	100	85.455	Sus_scrofa
MGP_CAROLIEiJ_G0027117	Slbp	93	70.498	ENSTGUG00000010626	-	100	72.414	Taeniopygia_guttata
MGP_CAROLIEiJ_G0027117	Slbp	82	60.733	ENSTRUG00000000688	slbp	91	49.801	Takifugu_rubripes
MGP_CAROLIEiJ_G0027117	Slbp	82	56.452	ENSTNIG00000000484	-	80	50.246	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0027117	Slbp	68	95.098	ENSTBEG00000004085	SLBP	100	68.504	Tupaia_belangeri
MGP_CAROLIEiJ_G0027117	Slbp	71	88.202	ENSTTRG00000004010	-	100	88.202	Tursiops_truncatus
MGP_CAROLIEiJ_G0027117	Slbp	79	93.981	ENSTTRG00000010901	-	100	93.981	Tursiops_truncatus
MGP_CAROLIEiJ_G0027117	Slbp	100	88.448	ENSUAMG00000012990	SLBP	100	88.448	Ursus_americanus
MGP_CAROLIEiJ_G0027117	Slbp	70	92.708	ENSUMAG00000006119	SLBP	100	92.708	Ursus_maritimus
MGP_CAROLIEiJ_G0027117	Slbp	100	87.273	ENSVVUG00000015578	-	100	87.273	Vulpes_vulpes
MGP_CAROLIEiJ_G0027117	Slbp	88	61.000	ENSXETG00000003876	slbp	93	59.684	Xenopus_tropicalis
MGP_CAROLIEiJ_G0027117	Slbp	82	60.209	ENSXCOG00000008275	slbp	81	55.869	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0027117	Slbp	82	60.317	ENSXMAG00000001331	-	75	55.924	Xiphophorus_maculatus