EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0027496 (Gene tree)
Gene ID: 110294913
Gene Symbol: Hfm1
Alias: A330009G12Rik|LOC381663|Mer3|Sec63d1
Full Name: HFM1%2C ATP-dependent DNA helicase homolog
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 89879 bases
Position: chr5:99738911-99828789
Accession: 3036246
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0069505	ResIII	PF04851.15	3.2e-07	1	1
MGP_CAROLIEiJ_P0069503	ResIII	PF04851.15	2.2e-06	1	1
MGP_CAROLIEiJ_P0069505	DEAD	PF00270.29	1.1e-14	1	1
MGP_CAROLIEiJ_P0069503	DEAD	PF00270.29	3.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0069504	-	1928	-	MGP_CAROLIEiJ_P0069504	625 (aa)	-	-
MGP_CAROLIEiJ_T0069505	-	1369	-	MGP_CAROLIEiJ_P0069505	394 (aa)	-	-
MGP_CAROLIEiJ_T0069502	-	2613	-	MGP_CAROLIEiJ_P0069502	49 (aa)	-	-
MGP_CAROLIEiJ_T0069503	-	4236	-	MGP_CAROLIEiJ_P0069503	1381 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0027496's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0027496's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0027496	Hfm1	55	31.724	MGP_CAROLIEiJ_G0024250	Snrnp200	72	31.724

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0027496	Hfm1	100	71.964	ENSG00000162669	HFM1	98	68.382	Homo_sapiens
MGP_CAROLIEiJ_G0027496	Hfm1	53	68.800	ENSAPOG00000005304	hfm1	86	68.800	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0027496	Hfm1	100	72.754	ENSAMEG00000000432	HFM1	95	72.754	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0027496	Hfm1	69	73.729	ENSACIG00000021553	hfm1	85	73.729	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0027496	Hfm1	50	74.737	ENSAOCG00000022839	hfm1	88	74.737	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0027496	Hfm1	50	74.737	ENSAPEG00000014316	hfm1	88	74.737	Amphiprion_percula
MGP_CAROLIEiJ_G0027496	Hfm1	69	74.576	ENSATEG00000019181	hfm1	82	74.576	Anabas_testudineus
MGP_CAROLIEiJ_G0027496	Hfm1	100	56.488	ENSAPLG00000013639	HFM1	95	56.488	Anas_platyrhynchos
MGP_CAROLIEiJ_G0027496	Hfm1	100	71.722	ENSANAG00000029513	HFM1	96	71.722	Aotus_nancymaae
MGP_CAROLIEiJ_G0027496	Hfm1	60	73.504	ENSACLG00000009033	hfm1	88	73.504	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0027496	Hfm1	82	60.026	ENSAMXG00000006108	hfm1	89	53.312	Astyanax_mexicanus
MGP_CAROLIEiJ_G0027496	Hfm1	100	71.499	ENSBTAG00000020856	HFM1	95	71.499	Bos_taurus
MGP_CAROLIEiJ_G0027496	Hfm1	97	69.845	ENSCJAG00000001843	HFM1	100	58.716	Callithrix_jacchus
MGP_CAROLIEiJ_G0027496	Hfm1	99	72.960	ENSCAFG00000020187	HFM1	96	72.960	Canis_familiaris
MGP_CAROLIEiJ_G0027496	Hfm1	97	67.609	ENSCAFG00020013595	-	83	67.609	Canis_lupus_dingo
MGP_CAROLIEiJ_G0027496	Hfm1	96	60.677	ENSCHIG00000018623	-	79	60.677	Capra_hircus
MGP_CAROLIEiJ_G0027496	Hfm1	100	70.696	ENSTSYG00000014250	HFM1	96	70.696	Carlito_syrichta
MGP_CAROLIEiJ_G0027496	Hfm1	99	68.874	ENSCPOG00000007421	HFM1	94	68.874	Cavia_porcellus
MGP_CAROLIEiJ_G0027496	Hfm1	100	70.349	ENSCCAG00000033206	HFM1	96	70.349	Cebus_capucinus
MGP_CAROLIEiJ_G0027496	Hfm1	100	71.649	ENSCATG00000030987	HFM1	96	71.649	Cercocebus_atys
MGP_CAROLIEiJ_G0027496	Hfm1	100	74.089	ENSCLAG00000005173	HFM1	94	74.089	Chinchilla_lanigera
MGP_CAROLIEiJ_G0027496	Hfm1	59	86.842	ENSCHOG00000011824	-	65	86.842	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0027496	Hfm1	97	71.392	ENSCANG00000034052	-	82	71.392	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0027496	Hfm1	100	68.797	ENSCGRG00001016995	Hfm1	100	68.750	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0027496	Hfm1	100	80.355	ENSCGRG00000017181	Hfm1	95	80.355	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0027496	Hfm1	61	72.881	ENSCSEG00000017659	hfm1	82	72.881	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0027496	Hfm1	72	62.025	ENSDARG00000104288	hfm1	88	62.025	Danio_rerio
MGP_CAROLIEiJ_G0027496	Hfm1	100	72.343	ENSDNOG00000004776	HFM1	95	72.343	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0027496	Hfm1	100	71.175	ENSDORG00000014661	Hfm1	95	71.175	Dipodomys_ordii
MGP_CAROLIEiJ_G0027496	Hfm1	97	67.866	ENSEASG00005015424	HFM1	89	95.146	Equus_asinus_asinus
MGP_CAROLIEiJ_G0027496	Hfm1	100	75.320	ENSECAG00000024039	HFM1	95	75.320	Equus_caballus
MGP_CAROLIEiJ_G0027496	Hfm1	58	76.860	ENSELUG00000018944	hfm1	89	76.860	Esox_lucius
MGP_CAROLIEiJ_G0027496	Hfm1	100	72.781	ENSFCAG00000029116	HFM1	95	72.781	Felis_catus
MGP_CAROLIEiJ_G0027496	Hfm1	99	56.489	ENSFALG00000001781	HFM1	96	56.489	Ficedula_albicollis
MGP_CAROLIEiJ_G0027496	Hfm1	100	72.835	ENSFDAG00000020816	HFM1	95	72.835	Fukomys_damarensis
MGP_CAROLIEiJ_G0027496	Hfm1	62	71.875	ENSGMOG00000017436	hfm1	93	71.875	Gadus_morhua
MGP_CAROLIEiJ_G0027496	Hfm1	70	72.500	ENSGAFG00000018093	hfm1	89	72.500	Gambusia_affinis
MGP_CAROLIEiJ_G0027496	Hfm1	62	73.729	ENSGACG00000015686	hfm1	92	73.729	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0027496	Hfm1	100	71.866	ENSGGOG00000038524	HFM1	94	71.866	Gorilla_gorilla
MGP_CAROLIEiJ_G0027496	Hfm1	60	73.504	ENSHBUG00000007309	hfm1	88	73.504	Haplochromis_burtoni
MGP_CAROLIEiJ_G0027496	Hfm1	97	69.430	ENSHGLG00000007780	-	83	69.430	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0027496	Hfm1	97	67.775	ENSHGLG00100019217	-	83	67.775	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0027496	Hfm1	52	68.750	ENSHCOG00000019632	hfm1	91	68.750	Hippocampus_comes
MGP_CAROLIEiJ_G0027496	Hfm1	61	70.000	ENSIPUG00000017020	hfm1	83	71.429	Ictalurus_punctatus
MGP_CAROLIEiJ_G0027496	Hfm1	97	70.466	ENSSTOG00000008477	-	83	70.466	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0027496	Hfm1	94	77.014	ENSJJAG00000017198	Hfm1	97	77.014	Jaculus_jaculus
MGP_CAROLIEiJ_G0027496	Hfm1	58	71.186	ENSKMAG00000002282	hfm1	82	71.186	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0027496	Hfm1	60	73.729	ENSLBEG00000006759	hfm1	89	70.000	Labrus_bergylta
MGP_CAROLIEiJ_G0027496	Hfm1	63	83.761	ENSLACG00000010698	HFM1	92	83.761	Latimeria_chalumnae
MGP_CAROLIEiJ_G0027496	Hfm1	73	63.636	ENSLOCG00000004931	hfm1	91	63.636	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0027496	Hfm1	100	71.907	ENSMFAG00000003649	HFM1	94	71.907	Macaca_fascicularis
MGP_CAROLIEiJ_G0027496	Hfm1	100	71.570	ENSMMUG00000006819	HFM1	94	71.570	Macaca_mulatta
MGP_CAROLIEiJ_G0027496	Hfm1	97	70.619	ENSMNEG00000039833	-	82	70.619	Macaca_nemestrina
MGP_CAROLIEiJ_G0027496	Hfm1	97	71.649	ENSMLEG00000027571	-	82	71.649	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0027496	Hfm1	53	71.186	ENSMAMG00000004623	hfm1	88	71.186	Mastacembelus_armatus
MGP_CAROLIEiJ_G0027496	Hfm1	60	73.504	ENSMZEG00005004679	hfm1	89	73.504	Maylandia_zebra
MGP_CAROLIEiJ_G0027496	Hfm1	96	45.823	ENSMGAG00000008437	HFM1	88	80.328	Meleagris_gallopavo
MGP_CAROLIEiJ_G0027496	Hfm1	100	79.664	ENSMAUG00000018858	Hfm1	95	79.664	Mesocricetus_auratus
MGP_CAROLIEiJ_G0027496	Hfm1	100	72.189	ENSMICG00000037935	HFM1	95	72.189	Microcebus_murinus
MGP_CAROLIEiJ_G0027496	Hfm1	100	78.677	ENSMOCG00000014812	Hfm1	95	78.677	Microtus_ochrogaster
MGP_CAROLIEiJ_G0027496	Hfm1	58	72.034	ENSMMOG00000006148	hfm1	85	72.034	Mola_mola
MGP_CAROLIEiJ_G0027496	Hfm1	60	72.034	ENSMALG00000002401	hfm1	88	72.034	Monopterus_albus
MGP_CAROLIEiJ_G0027496	Hfm1	100	96.104	ENSMUSG00000043410	Hfm1	95	96.104	Mus_musculus
MGP_CAROLIEiJ_G0027496	Hfm1	100	91.948	MGP_PahariEiJ_G0017268	Hfm1	96	92.208	Mus_pahari
MGP_CAROLIEiJ_G0027496	Hfm1	100	95.844	MGP_SPRETEiJ_G0028495	Hfm1	95	95.844	Mus_spretus
MGP_CAROLIEiJ_G0027496	Hfm1	100	74.140	ENSMPUG00000004594	HFM1	95	74.140	Mustela_putorius_furo
MGP_CAROLIEiJ_G0027496	Hfm1	100	69.625	ENSMLUG00000010200	HFM1	95	69.625	Myotis_lucifugus
MGP_CAROLIEiJ_G0027496	Hfm1	69	73.504	ENSNBRG00000002910	hfm1	88	73.504	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0027496	Hfm1	100	71.392	ENSNLEG00000010285	HFM1	96	71.392	Nomascus_leucogenys
MGP_CAROLIEiJ_G0027496	Hfm1	79	78.226	ENSMEUG00000015788	HFM1	73	78.226	Notamacropus_eugenii
MGP_CAROLIEiJ_G0027496	Hfm1	83	69.774	ENSOPRG00000013916	HFM1	78	69.774	Ochotona_princeps
MGP_CAROLIEiJ_G0027496	Hfm1	97	68.653	ENSODEG00000006243	-	83	68.653	Octodon_degus
MGP_CAROLIEiJ_G0027496	Hfm1	65	69.504	ENSONIG00000010590	hfm1	93	69.504	Oreochromis_niloticus
MGP_CAROLIEiJ_G0027496	Hfm1	99	63.476	ENSOCUG00000010974	-	97	63.476	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0027496	Hfm1	52	70.085	ENSORLG00000026844	hfm1	91	70.085	Oryzias_latipes
MGP_CAROLIEiJ_G0027496	Hfm1	75	63.636	ENSOMEG00000016474	hfm1	95	48.184	Oryzias_melastigma
MGP_CAROLIEiJ_G0027496	Hfm1	97	69.330	ENSOGAG00000032369	HFM1	95	77.593	Otolemur_garnettii
MGP_CAROLIEiJ_G0027496	Hfm1	100	70.936	ENSOARG00000015812	HFM1	94	70.936	Ovis_aries
MGP_CAROLIEiJ_G0027496	Hfm1	97	72.165	ENSPPAG00000024582	HFM1	94	74.501	Pan_paniscus
MGP_CAROLIEiJ_G0027496	Hfm1	100	73.077	ENSPPRG00000003270	HFM1	95	73.077	Panthera_pardus
MGP_CAROLIEiJ_G0027496	Hfm1	100	72.978	ENSPTIG00000018881	HFM1	95	72.978	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0027496	Hfm1	100	72.165	ENSPTRG00000000948	HFM1	94	72.165	Pan_troglodytes
MGP_CAROLIEiJ_G0027496	Hfm1	100	71.392	ENSPANG00000009838	HFM1	96	71.392	Papio_anubis
MGP_CAROLIEiJ_G0027496	Hfm1	57	73.729	ENSPKIG00000003810	hfm1	86	70.992	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0027496	Hfm1	53	68.644	ENSPMGG00000011059	hfm1	91	68.644	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0027496	Hfm1	100	81.606	ENSPEMG00000022852	Hfm1	95	81.606	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0027496	Hfm1	100	64.902	ENSPCIG00000014233	HFM1	95	64.902	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0027496	Hfm1	69	73.504	ENSPFOG00000017194	hfm1	92	73.504	Poecilia_formosa
MGP_CAROLIEiJ_G0027496	Hfm1	61	72.131	ENSPLAG00000000571	hfm1	78	72.131	Poecilia_latipinna
MGP_CAROLIEiJ_G0027496	Hfm1	61	72.131	ENSPMEG00000019475	hfm1	78	72.131	Poecilia_mexicana
MGP_CAROLIEiJ_G0027496	Hfm1	69	72.881	ENSPREG00000007803	hfm1	86	72.881	Poecilia_reticulata
MGP_CAROLIEiJ_G0027496	Hfm1	100	71.866	ENSPPYG00000001163	HFM1	94	71.866	Pongo_abelii
MGP_CAROLIEiJ_G0027496	Hfm1	69	78.049	ENSPCAG00000004289	-	68	78.049	Procavia_capensis
MGP_CAROLIEiJ_G0027496	Hfm1	98	59.439	ENSPCOG00000026252	-	84	59.439	Propithecus_coquereli
MGP_CAROLIEiJ_G0027496	Hfm1	100	64.524	ENSPVAG00000009713	HFM1	94	64.524	Pteropus_vampyrus
MGP_CAROLIEiJ_G0027496	Hfm1	60	73.504	ENSPNYG00000001795	hfm1	88	73.504	Pundamilia_nyererei
MGP_CAROLIEiJ_G0027496	Hfm1	58	62.969	ENSPNAG00000010865	hfm1	82	62.969	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0027496	Hfm1	100	83.218	ENSRNOG00000023299	Hfm1	95	83.218	Rattus_norvegicus
MGP_CAROLIEiJ_G0027496	Hfm1	97	70.876	ENSRBIG00000033899	-	82	70.876	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0027496	Hfm1	100	71.134	ENSRROG00000045569	HFM1	96	71.134	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0027496	Hfm1	95	77.875	ENSSBOG00000027456	HFM1	94	77.875	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0027496	Hfm1	96	51.151	ENSSHAG00000014616	-	89	74.684	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0027496	Hfm1	82	58.250	ENSSFOG00015020129	hfm1	95	48.708	Scleropages_formosus
MGP_CAROLIEiJ_G0027496	Hfm1	58	72.034	ENSSMAG00000006907	hfm1	79	72.034	Scophthalmus_maximus
MGP_CAROLIEiJ_G0027496	Hfm1	53	71.186	ENSSDUG00000011424	hfm1	84	71.186	Seriola_dumerili
MGP_CAROLIEiJ_G0027496	Hfm1	53	71.667	ENSSLDG00000016386	hfm1	83	71.667	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0027496	Hfm1	96	59.115	ENSSARG00000009598	-	98	59.115	Sorex_araneus
MGP_CAROLIEiJ_G0027496	Hfm1	61	74.257	ENSSPAG00000001023	hfm1	86	74.257	Stegastes_partitus
MGP_CAROLIEiJ_G0027496	Hfm1	100	72.960	ENSSSCG00000006912	HFM1	92	76.659	Sus_scrofa
MGP_CAROLIEiJ_G0027496	Hfm1	62	85.039	ENSTGUG00000006172	HFM1	95	85.039	Taeniopygia_guttata
MGP_CAROLIEiJ_G0027496	Hfm1	98	65.816	ENSTBEG00000017533	-	99	65.816	Tupaia_belangeri
MGP_CAROLIEiJ_G0027496	Hfm1	100	69.251	ENSTTRG00000013933	HFM1	94	69.251	Tursiops_truncatus
MGP_CAROLIEiJ_G0027496	Hfm1	97	58.247	ENSUAMG00000008754	-	99	62.722	Ursus_americanus
MGP_CAROLIEiJ_G0027496	Hfm1	97	66.838	ENSUMAG00000001345	-	83	66.838	Ursus_maritimus
MGP_CAROLIEiJ_G0027496	Hfm1	93	72.072	ENSVPAG00000011331	HFM1	88	72.072	Vicugna_pacos
MGP_CAROLIEiJ_G0027496	Hfm1	97	66.581	ENSVVUG00000020760	HFM1	94	93.204	Vulpes_vulpes
MGP_CAROLIEiJ_G0027496	Hfm1	53	67.939	ENSXMAG00000004178	hfm1	83	67.939	Xiphophorus_maculatus