EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0027638 (Gene tree)
Gene ID: 110295006
Gene Symbol: Srrm4
Alias: 1500001A10Rik|B230202K19Rik|bv|flopsy|fp|nSR100
Full Name: serine/arginine repetitive matrix 4
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 157255 bases
Position: chr5:109400118-109557372
Accession: 110295006
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0070230	SRRM_C	PF15230.6	9.9e-25	1	1
MGP_CAROLIEiJ_P0070232	SRRM_C	PF15230.6	2.2e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0070232	-	7446	-	MGP_CAROLIEiJ_P0070232	606 (aa)	XP_021019102	UPI000A31A9E9
MGP_CAROLIEiJ_T0070233	-	801	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0070230	-	6343	-	MGP_CAROLIEiJ_P0070230	353 (aa)	-	-
MGP_CAROLIEiJ_T0070231	-	6530	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0027638's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0027638's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.398	ENSG00000139767	SRRM4	85	87.115	Homo_sapiens
MGP_CAROLIEiJ_G0027638	Srrm4	79	80.498	ENSAMEG00000016072	SRRM4	89	83.093	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0027638	Srrm4	65	51.300	ENSAPLG00000009202	SRRM4	91	54.144	Anas_platyrhynchos
MGP_CAROLIEiJ_G0027638	Srrm4	85	47.575	ENSACAG00000004139	SRRM4	88	51.119	Anolis_carolinensis
MGP_CAROLIEiJ_G0027638	Srrm4	75	88.722	ENSANAG00000020333	SRRM4	83	66.799	Aotus_nancymaae
MGP_CAROLIEiJ_G0027638	Srrm4	85	81.226	ENSBTAG00000008676	SRRM4	86	83.077	Bos_taurus
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.590	ENSCJAG00000009146	SRRM4	85	87.308	Callithrix_jacchus
MGP_CAROLIEiJ_G0027638	Srrm4	85	83.269	ENSCAFG00000023113	SRRM4	85	85.385	Canis_familiaris
MGP_CAROLIEiJ_G0027638	Srrm4	74	86.742	ENSCAFG00020018665	SRRM4	55	85.127	Canis_lupus_dingo
MGP_CAROLIEiJ_G0027638	Srrm4	75	85.821	ENSCHIG00000019151	SRRM4	85	66.348	Capra_hircus
MGP_CAROLIEiJ_G0027638	Srrm4	78	84.551	ENSTSYG00000012239	SRRM4	84	85.325	Carlito_syrichta
MGP_CAROLIEiJ_G0027638	Srrm4	82	77.246	ENSCAPG00000008729	SRRM4	88	85.591	Cavia_aperea
MGP_CAROLIEiJ_G0027638	Srrm4	85	85.605	ENSCPOG00000003544	SRRM4	85	86.320	Cavia_porcellus
MGP_CAROLIEiJ_G0027638	Srrm4	85	85.824	ENSCCAG00000022479	SRRM4	85	86.538	Cebus_capucinus
MGP_CAROLIEiJ_G0027638	Srrm4	85	85.632	ENSCATG00000036343	SRRM4	85	86.346	Cercocebus_atys
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.731	ENSCLAG00000009764	SRRM4	85	87.476	Chinchilla_lanigera
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.015	ENSCSAG00000002300	SRRM4	85	86.731	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0027638	Srrm4	75	61.938	ENSCPBG00000012293	SRRM4	87	62.018	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0027638	Srrm4	85	83.077	ENSCANG00000031719	SRRM4	85	83.591	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0027638	Srrm4	85	91.085	ENSCGRG00001000544	Srrm4	86	93.798	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.100	ENSCGRG00000006973	Srrm4	85	86.047	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0027638	Srrm4	85	81.836	ENSDNOG00000000260	SRRM4	88	82.274	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0027638	Srrm4	85	76.967	ENSDORG00000015243	Srrm4	87	76.834	Dipodomys_ordii
MGP_CAROLIEiJ_G0027638	Srrm4	85	82.592	ENSEASG00005008759	SRRM4	87	84.038	Equus_asinus_asinus
MGP_CAROLIEiJ_G0027638	Srrm4	85	82.592	ENSECAG00000021729	SRRM4	87	84.038	Equus_caballus
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.074	ENSFCAG00000010536	SRRM4	83	86.923	Felis_catus
MGP_CAROLIEiJ_G0027638	Srrm4	85	83.752	ENSFDAG00000007218	SRRM4	85	84.038	Fukomys_damarensis
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.590	ENSGGOG00000005338	SRRM4	85	87.308	Gorilla_gorilla
MGP_CAROLIEiJ_G0027638	Srrm4	85	83.591	ENSHGLG00000007830	SRRM4	86	85.577	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0027638	Srrm4	74	82.264	ENSHGLG00100008549	SRRM4	90	74.074	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0027638	Srrm4	78	75.630	ENSSTOG00000026642	SRRM4	83	75.789	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0027638	Srrm4	82	77.490	ENSJJAG00000016448	Srrm4	81	82.600	Jaculus_jaculus
MGP_CAROLIEiJ_G0027638	Srrm4	85	85.271	ENSLAFG00000003731	SRRM4	84	84.363	Loxodonta_africana
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.207	ENSMFAG00000041271	SRRM4	84	86.923	Macaca_fascicularis
MGP_CAROLIEiJ_G0027638	Srrm4	84	73.166	ENSMMUG00000021230	SRRM4	67	77.143	Macaca_mulatta
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.015	ENSMNEG00000044154	SRRM4	84	86.731	Macaca_nemestrina
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.398	ENSMLEG00000034455	SRRM4	85	87.115	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0027638	Srrm4	85	59.211	ENSMGAG00000009082	SRRM4	87	59.925	Meleagris_gallopavo
MGP_CAROLIEiJ_G0027638	Srrm4	85	90.698	ENSMAUG00000013203	Srrm4	86	93.411	Mesocricetus_auratus
MGP_CAROLIEiJ_G0027638	Srrm4	85	85.441	ENSMICG00000012386	SRRM4	85	85.769	Microcebus_murinus
MGP_CAROLIEiJ_G0027638	Srrm4	85	89.535	ENSMOCG00000006737	Srrm4	86	92.054	Microtus_ochrogaster
MGP_CAROLIEiJ_G0027638	Srrm4	85	56.915	ENSMODG00000015283	SRRM4	86	54.529	Monodelphis_domestica
MGP_CAROLIEiJ_G0027638	Srrm4	100	99.013	ENSMUSG00000063919	Srrm4	100	99.013	Mus_musculus
MGP_CAROLIEiJ_G0027638	Srrm4	100	96.865	MGP_PahariEiJ_G0024219	Srrm4	100	96.865	Mus_pahari
MGP_CAROLIEiJ_G0027638	Srrm4	100	99.016	MGP_SPRETEiJ_G0028637	Srrm4	100	99.016	Mus_spretus
MGP_CAROLIEiJ_G0027638	Srrm4	85	83.172	ENSMPUG00000002930	SRRM4	86	85.385	Mustela_putorius_furo
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.807	ENSNGAG00000020807	Srrm4	86	88.292	Nannospalax_galili
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.398	ENSNLEG00000000200	SRRM4	85	87.115	Nomascus_leucogenys
MGP_CAROLIEiJ_G0027638	Srrm4	85	77.333	ENSOPRG00000016981	SRRM4	77	76.326	Ochotona_princeps
MGP_CAROLIEiJ_G0027638	Srrm4	85	85.549	ENSODEG00000006291	SRRM4	85	86.320	Octodon_degus
MGP_CAROLIEiJ_G0027638	Srrm4	85	85.135	ENSOCUG00000004503	SRRM4	77	83.685	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0027638	Srrm4	85	85.057	ENSOGAG00000015431	SRRM4	85	85.769	Otolemur_garnettii
MGP_CAROLIEiJ_G0027638	Srrm4	85	83.333	ENSOARG00000002063	SRRM4	86	84.231	Ovis_aries
MGP_CAROLIEiJ_G0027638	Srrm4	75	89.474	ENSPPAG00000028134	SRRM4	84	86.765	Pan_paniscus
MGP_CAROLIEiJ_G0027638	Srrm4	85	85.687	ENSPPRG00000002659	SRRM4	84	86.538	Panthera_pardus
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.590	ENSPTRG00000005517	SRRM4	85	87.308	Pan_troglodytes
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.015	ENSPANG00000022544	SRRM4	99	86.078	Papio_anubis
MGP_CAROLIEiJ_G0027638	Srrm4	85	92.070	ENSPEMG00000001823	Srrm4	86	94.584	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0027638	Srrm4	75	89.811	ENSPPYG00000005014	SRRM4	83	74.792	Pongo_abelii
MGP_CAROLIEiJ_G0027638	Srrm4	75	82.955	ENSPCAG00000016401	SRRM4	68	76.582	Procavia_capensis
MGP_CAROLIEiJ_G0027638	Srrm4	85	86.015	ENSPCOG00000013803	SRRM4	86	86.731	Propithecus_coquereli
MGP_CAROLIEiJ_G0027638	Srrm4	78	84.728	ENSPVAG00000017487	SRRM4	85	85.714	Pteropus_vampyrus
MGP_CAROLIEiJ_G0027638	Srrm4	100	96.865	ENSRNOG00000001141	Srrm4	100	96.865	Rattus_norvegicus
MGP_CAROLIEiJ_G0027638	Srrm4	75	87.218	ENSRBIG00000040107	SRRM4	80	74.947	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0027638	Srrm4	75	88.346	ENSRROG00000035868	SRRM4	80	75.579	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0027638	Srrm4	85	78.927	ENSSBOG00000035310	SRRM4	85	79.615	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0027638	Srrm4	78	65.531	ENSSHAG00000017330	SRRM4	87	61.446	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0027638	Srrm4	75	81.579	ENSSARG00000012647	SRRM4	84	66.176	Sorex_araneus
MGP_CAROLIEiJ_G0027638	Srrm4	85	84.483	ENSSSCG00000009845	SRRM4	85	85.192	Sus_scrofa
MGP_CAROLIEiJ_G0027638	Srrm4	63	54.962	ENSTGUG00000009228	SRRM4	91	55.701	Taeniopygia_guttata
MGP_CAROLIEiJ_G0027638	Srrm4	76	86.897	ENSVPAG00000007937	SRRM4	71	85.496	Vicugna_pacos
MGP_CAROLIEiJ_G0027638	Srrm4	74	85.985	ENSVVUG00000013334	SRRM4	74	86.029	Vulpes_vulpes
MGP_CAROLIEiJ_G0027638	Srrm4	62	47.507	ENSXETG00000019934	SRRM4	97	51.132	Xenopus_tropicalis