EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0027665 (Gene tree)
Gene ID: 110294812
Gene Symbol: Ddx54
Alias: 2410015A15Rik|APR-5|DP97
Full Name: DEAD-box helicase 54
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 16069 bases
Position: chr5:113568684-113584752
Accession: 110294812
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0070361	DBP10CT	PF08147.12	3.2e-18	1	1
MGP_CAROLIEiJ_P0070361	ResIII	PF04851.15	2e-06	1	1
MGP_CAROLIEiJ_P0070361	DEAD	PF00270.29	1.1e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0070364	-	471	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0070361	-	4294	-	MGP_CAROLIEiJ_P0070361	875 (aa)	XP_021018956	UPI000A3145A0
MGP_CAROLIEiJ_T0070362	-	4253	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0070363	-	851	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0027665's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0027665's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0027665	Ddx54	50	32.230	MGP_CAROLIEiJ_G0014529	Ddx18	64	31.929

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0027665	Ddx54	100	84.354	ENSG00000123064	DDX54	100	96.635	Homo_sapiens
MGP_CAROLIEiJ_G0027665	Ddx54	95	62.692	ENSAPOG00000008602	ddx54	98	62.211	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0027665	Ddx54	98	85.035	ENSAMEG00000008775	DDX54	96	85.849	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0027665	Ddx54	96	62.253	ENSACIG00000019104	ddx54	98	62.137	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0027665	Ddx54	95	62.648	ENSAOCG00000008449	ddx54	98	62.153	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0027665	Ddx54	95	62.648	ENSAPEG00000014287	ddx54	98	62.153	Amphiprion_percula
MGP_CAROLIEiJ_G0027665	Ddx54	95	63.011	ENSATEG00000018529	ddx54	97	63.176	Anabas_testudineus
MGP_CAROLIEiJ_G0027665	Ddx54	93	70.208	ENSAPLG00000013191	DDX54	100	70.330	Anas_platyrhynchos
MGP_CAROLIEiJ_G0027665	Ddx54	92	69.091	ENSACAG00000004703	DDX54	96	68.940	Anolis_carolinensis
MGP_CAROLIEiJ_G0027665	Ddx54	89	76.221	ENSANAG00000032241	-	95	75.750	Aotus_nancymaae
MGP_CAROLIEiJ_G0027665	Ddx54	100	74.408	ENSANAG00000032761	-	100	73.844	Aotus_nancymaae
MGP_CAROLIEiJ_G0027665	Ddx54	97	62.181	ENSACLG00000013176	ddx54	98	62.178	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0027665	Ddx54	96	62.676	ENSAMXG00000009189	ddx54	98	61.972	Astyanax_mexicanus
MGP_CAROLIEiJ_G0027665	Ddx54	100	84.642	ENSBTAG00000011930	DDX54	95	85.063	Bos_taurus
MGP_CAROLIEiJ_G0027665	Ddx54	87	45.051	WBGene00022378	Y94H6A.5	95	44.107	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0027665	Ddx54	93	83.476	ENSCJAG00000010039	DDX54	88	83.599	Callithrix_jacchus
MGP_CAROLIEiJ_G0027665	Ddx54	65	81.119	ENSCAFG00000009029	DDX54	99	82.199	Canis_familiaris
MGP_CAROLIEiJ_G0027665	Ddx54	100	85.341	ENSCAFG00020017643	DDX54	100	85.244	Canis_lupus_dingo
MGP_CAROLIEiJ_G0027665	Ddx54	100	82.993	ENSCHIG00000026798	DDX54	100	82.599	Capra_hircus
MGP_CAROLIEiJ_G0027665	Ddx54	99	79.819	ENSTSYG00000007898	DDX54	94	82.709	Carlito_syrichta
MGP_CAROLIEiJ_G0027665	Ddx54	93	84.044	ENSCAPG00000001482	DDX54	99	80.098	Cavia_aperea
MGP_CAROLIEiJ_G0027665	Ddx54	100	84.545	ENSCPOG00000020649	DDX54	100	84.545	Cavia_porcellus
MGP_CAROLIEiJ_G0027665	Ddx54	100	84.187	ENSCCAG00000022625	DDX54	100	84.073	Cebus_capucinus
MGP_CAROLIEiJ_G0027665	Ddx54	100	83.805	ENSCATG00000041943	DDX54	100	83.597	Cercocebus_atys
MGP_CAROLIEiJ_G0027665	Ddx54	100	83.200	ENSCLAG00000010748	DDX54	100	82.857	Chinchilla_lanigera
MGP_CAROLIEiJ_G0027665	Ddx54	99	78.761	ENSCSAG00000002432	DDX54	93	81.808	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0027665	Ddx54	75	64.837	ENSCPBG00000017982	DDX54	85	64.776	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0027665	Ddx54	86	52.344	ENSCING00000004789	-	94	52.179	Ciona_intestinalis
MGP_CAROLIEiJ_G0027665	Ddx54	88	51.799	ENSCSAVG00000008916	-	98	67.169	Ciona_savignyi
MGP_CAROLIEiJ_G0027665	Ddx54	88	95.763	ENSCANG00000020637	DDX54	100	95.763	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0027665	Ddx54	100	92.114	ENSCGRG00001014803	Ddx54	100	92.000	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0027665	Ddx54	100	91.790	ENSCGRG00000002827	Ddx54	100	91.676	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0027665	Ddx54	95	60.514	ENSCSEG00000016462	ddx54	98	60.764	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0027665	Ddx54	97	61.092	ENSCVAG00000022404	ddx54	98	61.001	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0027665	Ddx54	97	62.877	ENSDARG00000105286	ddx54	98	62.993	Danio_rerio
MGP_CAROLIEiJ_G0027665	Ddx54	100	83.219	ENSDNOG00000032913	DDX54	100	83.447	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0027665	Ddx54	80	83.119	ENSDORG00000003399	Ddx54	95	83.262	Dipodomys_ordii
MGP_CAROLIEiJ_G0027665	Ddx54	80	45.516	FBgn0052344	CG32344	88	44.947	Drosophila_melanogaster
MGP_CAROLIEiJ_G0027665	Ddx54	50	96.575	ENSETEG00000008430	-	53	96.575	Echinops_telfairi
MGP_CAROLIEiJ_G0027665	Ddx54	80	58.601	ENSEBUG00000008886	ddx54	97	59.084	Eptatretus_burgeri
MGP_CAROLIEiJ_G0027665	Ddx54	100	76.131	ENSEASG00005009501	DDX54	100	75.841	Equus_asinus_asinus
MGP_CAROLIEiJ_G0027665	Ddx54	100	84.109	ENSECAG00000012890	DDX54	100	84.485	Equus_caballus
MGP_CAROLIEiJ_G0027665	Ddx54	67	96.203	ENSEEUG00000008296	-	68	96.203	Erinaceus_europaeus
MGP_CAROLIEiJ_G0027665	Ddx54	96	61.744	ENSELUG00000013533	ddx54	98	61.734	Esox_lucius
MGP_CAROLIEiJ_G0027665	Ddx54	100	83.485	ENSFCAG00000027806	DDX54	100	84.109	Felis_catus
MGP_CAROLIEiJ_G0027665	Ddx54	91	71.161	ENSFALG00000007737	DDX54	100	70.735	Ficedula_albicollis
MGP_CAROLIEiJ_G0027665	Ddx54	90	88.503	ENSFDAG00000019953	DDX54	100	88.110	Fukomys_damarensis
MGP_CAROLIEiJ_G0027665	Ddx54	97	61.298	ENSFHEG00000018425	ddx54	98	61.208	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0027665	Ddx54	94	59.689	ENSGMOG00000011746	ddx54	98	60.343	Gadus_morhua
MGP_CAROLIEiJ_G0027665	Ddx54	93	70.048	ENSGALG00000007490	DDX54	97	69.203	Gallus_gallus
MGP_CAROLIEiJ_G0027665	Ddx54	96	60.517	ENSGAFG00000010336	ddx54	98	60.941	Gambusia_affinis
MGP_CAROLIEiJ_G0027665	Ddx54	93	59.882	ENSGACG00000016793	ddx54	95	60.119	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0027665	Ddx54	94	70.267	ENSGAGG00000022803	DDX54	100	69.581	Gopherus_agassizii
MGP_CAROLIEiJ_G0027665	Ddx54	100	84.485	ENSGGOG00000010414	DDX54	100	84.014	Gorilla_gorilla
MGP_CAROLIEiJ_G0027665	Ddx54	100	84.282	ENSHGLG00000014411	DDX54	100	83.900	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0027665	Ddx54	100	84.493	ENSHGLG00100018511	DDX54	100	84.109	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0027665	Ddx54	96	61.430	ENSHCOG00000019287	ddx54	98	61.313	Hippocampus_comes
MGP_CAROLIEiJ_G0027665	Ddx54	96	62.339	ENSIPUG00000015556	Ddx54	98	61.637	Ictalurus_punctatus
MGP_CAROLIEiJ_G0027665	Ddx54	87	85.526	ENSSTOG00000004068	DDX54	100	86.065	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0027665	Ddx54	99	87.875	ENSJJAG00000015712	Ddx54	100	87.585	Jaculus_jaculus
MGP_CAROLIEiJ_G0027665	Ddx54	97	61.234	ENSKMAG00000017520	ddx54	98	61.466	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0027665	Ddx54	96	58.609	ENSLBEG00000019480	ddx54	98	60.864	Labrus_bergylta
MGP_CAROLIEiJ_G0027665	Ddx54	95	66.074	ENSLACG00000008944	DDX54	96	65.461	Latimeria_chalumnae
MGP_CAROLIEiJ_G0027665	Ddx54	96	64.988	ENSLOCG00000008485	ddx54	98	64.941	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0027665	Ddx54	89	74.442	ENSLAFG00000027782	DDX54	100	74.318	Loxodonta_africana
MGP_CAROLIEiJ_G0027665	Ddx54	100	83.710	ENSMFAG00000043636	DDX54	100	83.824	Macaca_fascicularis
MGP_CAROLIEiJ_G0027665	Ddx54	100	82.919	ENSMMUG00000021795	DDX54	100	83.258	Macaca_mulatta
MGP_CAROLIEiJ_G0027665	Ddx54	100	76.357	ENSMNEG00000043605	DDX54	100	76.697	Macaca_nemestrina
MGP_CAROLIEiJ_G0027665	Ddx54	99	79.138	ENSMLEG00000038981	DDX54	99	79.162	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0027665	Ddx54	97	62.053	ENSMAMG00000012784	ddx54	98	62.209	Mastacembelus_armatus
MGP_CAROLIEiJ_G0027665	Ddx54	97	61.610	ENSMZEG00005018773	ddx54	98	61.827	Maylandia_zebra
MGP_CAROLIEiJ_G0027665	Ddx54	93	69.268	ENSMGAG00000009183	DDX54	100	68.712	Meleagris_gallopavo
MGP_CAROLIEiJ_G0027665	Ddx54	100	91.543	ENSMAUG00000011051	Ddx54	100	92.000	Mesocricetus_auratus
MGP_CAROLIEiJ_G0027665	Ddx54	100	83.808	ENSMICG00000012217	DDX54	100	83.694	Microcebus_murinus
MGP_CAROLIEiJ_G0027665	Ddx54	100	91.771	ENSMOCG00000010835	Ddx54	100	91.886	Microtus_ochrogaster
MGP_CAROLIEiJ_G0027665	Ddx54	94	60.676	ENSMMOG00000009634	ddx54	98	60.188	Mola_mola
MGP_CAROLIEiJ_G0027665	Ddx54	95	74.702	ENSMODG00000003413	DDX54	99	75.000	Monodelphis_domestica
MGP_CAROLIEiJ_G0027665	Ddx54	96	62.998	ENSMALG00000022098	ddx54	98	63.059	Monopterus_albus
MGP_CAROLIEiJ_G0027665	Ddx54	100	98.290	ENSMUSG00000029599	Ddx54	100	98.290	Mus_musculus
MGP_CAROLIEiJ_G0027665	Ddx54	100	97.486	MGP_PahariEiJ_G0024247	Ddx54	100	97.486	Mus_pahari
MGP_CAROLIEiJ_G0027665	Ddx54	100	97.948	MGP_SPRETEiJ_G0028665	Ddx54	100	97.948	Mus_spretus
MGP_CAROLIEiJ_G0027665	Ddx54	100	83.732	ENSMPUG00000002574	DDX54	100	84.109	Mustela_putorius_furo
MGP_CAROLIEiJ_G0027665	Ddx54	100	87.372	ENSNGAG00000021313	Ddx54	100	87.600	Nannospalax_galili
MGP_CAROLIEiJ_G0027665	Ddx54	66	78.000	ENSNBRG00000005588	ddx54	74	78.086	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0027665	Ddx54	100	84.869	ENSNLEG00000000162	DDX54	100	84.642	Nomascus_leucogenys
MGP_CAROLIEiJ_G0027665	Ddx54	80	76.791	ENSMEUG00000015392	DDX54	98	78.319	Notamacropus_eugenii
MGP_CAROLIEiJ_G0027665	Ddx54	91	77.955	ENSOPRG00000012000	DDX54	92	77.646	Ochotona_princeps
MGP_CAROLIEiJ_G0027665	Ddx54	100	80.730	ENSODEG00000014863	DDX54	100	80.616	Octodon_degus
MGP_CAROLIEiJ_G0027665	Ddx54	100	83.465	ENSOCUG00000008932	DDX54	100	83.333	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0027665	Ddx54	95	61.502	ENSORLG00000007385	ddx54	97	61.393	Oryzias_latipes
MGP_CAROLIEiJ_G0027665	Ddx54	97	61.458	ENSORLG00020000858	ddx54	97	61.747	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0027665	Ddx54	97	60.970	ENSORLG00015006956	ddx54	97	61.393	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0027665	Ddx54	94	62.485	ENSOMEG00000003663	ddx54	98	61.944	Oryzias_melastigma
MGP_CAROLIEiJ_G0027665	Ddx54	100	85.160	ENSOGAG00000004210	DDX54	100	85.194	Otolemur_garnettii
MGP_CAROLIEiJ_G0027665	Ddx54	100	83.655	ENSOARG00000008363	DDX54	100	83.277	Ovis_aries
MGP_CAROLIEiJ_G0027665	Ddx54	100	83.164	ENSPPAG00000042178	DDX54	100	83.390	Pan_paniscus
MGP_CAROLIEiJ_G0027665	Ddx54	100	81.777	ENSPPRG00000005223	DDX54	100	82.594	Panthera_pardus
MGP_CAROLIEiJ_G0027665	Ddx54	73	74.396	ENSPTIG00000019728	DDX54	86	75.121	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0027665	Ddx54	100	83.673	ENSPTRG00000005483	DDX54	100	83.787	Pan_troglodytes
MGP_CAROLIEiJ_G0027665	Ddx54	100	83.145	ENSPANG00000008883	DDX54	100	83.484	Papio_anubis
MGP_CAROLIEiJ_G0027665	Ddx54	96	63.711	ENSPKIG00000018272	ddx54	96	63.658	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0027665	Ddx54	53	81.197	ENSPSIG00000005055	DDX54	96	81.023	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0027665	Ddx54	93	60.220	ENSPMGG00000010988	ddx54	99	59.780	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0027665	Ddx54	100	93.143	ENSPEMG00000016701	Ddx54	100	93.143	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0027665	Ddx54	96	62.146	ENSPFOG00000019822	ddx54	97	62.146	Poecilia_formosa
MGP_CAROLIEiJ_G0027665	Ddx54	96	61.358	ENSPLAG00000004530	ddx54	97	61.249	Poecilia_latipinna
MGP_CAROLIEiJ_G0027665	Ddx54	96	61.241	ENSPMEG00000010803	ddx54	97	61.131	Poecilia_mexicana
MGP_CAROLIEiJ_G0027665	Ddx54	96	61.294	ENSPREG00000014372	ddx54	97	61.366	Poecilia_reticulata
MGP_CAROLIEiJ_G0027665	Ddx54	100	84.389	ENSPPYG00000004984	DDX54	100	84.276	Pongo_abelii
MGP_CAROLIEiJ_G0027665	Ddx54	100	78.449	ENSPCAG00000008462	DDX54	100	78.335	Procavia_capensis
MGP_CAROLIEiJ_G0027665	Ddx54	100	84.132	ENSPCOG00000006050	DDX54	100	84.852	Propithecus_coquereli
MGP_CAROLIEiJ_G0027665	Ddx54	93	87.629	ENSPVAG00000017347	DDX54	100	73.660	Pteropus_vampyrus
MGP_CAROLIEiJ_G0027665	Ddx54	96	59.555	ENSPNAG00000014459	ddx54	95	66.048	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0027665	Ddx54	100	95.097	ENSRNOG00000001377	Ddx54	96	94.869	Rattus_norvegicus
MGP_CAROLIEiJ_G0027665	Ddx54	100	83.164	ENSRBIG00000032535	DDX54	100	83.503	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0027665	Ddx54	100	79.322	ENSRROG00000029557	DDX54	100	79.435	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0027665	Ddx54	87	36.621	YDL031W	-	81	36.508	Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0027665	Ddx54	100	83.864	ENSSBOG00000028194	DDX54	100	83.977	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0027665	Ddx54	94	73.269	ENSSHAG00000015646	DDX54	100	74.150	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0027665	Ddx54	97	62.704	ENSSFOG00015014981	ddx54	98	62.368	Scleropages_formosus
MGP_CAROLIEiJ_G0027665	Ddx54	94	59.360	ENSSMAG00000003210	ddx54	98	59.745	Scophthalmus_maximus
MGP_CAROLIEiJ_G0027665	Ddx54	94	61.105	ENSSDUG00000004474	ddx54	98	60.875	Seriola_dumerili
MGP_CAROLIEiJ_G0027665	Ddx54	95	60.070	ENSSLDG00000010380	ddx54	98	60.069	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0027665	Ddx54	96	69.514	ENSSPUG00000014141	DDX54	97	69.194	Sphenodon_punctatus
MGP_CAROLIEiJ_G0027665	Ddx54	91	62.189	ENSSPAG00000022918	ddx54	97	61.772	Stegastes_partitus
MGP_CAROLIEiJ_G0027665	Ddx54	100	85.227	ENSSSCG00000009876	DDX54	100	85.114	Sus_scrofa
MGP_CAROLIEiJ_G0027665	Ddx54	92	70.147	ENSTGUG00000009126	DDX54	100	69.485	Taeniopygia_guttata
MGP_CAROLIEiJ_G0027665	Ddx54	96	60.970	ENSTRUG00000014939	ddx54	98	60.855	Takifugu_rubripes
MGP_CAROLIEiJ_G0027665	Ddx54	96	63.102	ENSTNIG00000009037	ddx54	98	62.382	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0027665	Ddx54	73	93.462	ENSTBEG00000003783	DDX54	79	93.462	Tupaia_belangeri
MGP_CAROLIEiJ_G0027665	Ddx54	97	81.850	ENSTTRG00000016678	DDX54	100	80.861	Tursiops_truncatus
MGP_CAROLIEiJ_G0027665	Ddx54	100	84.528	ENSUAMG00000028387	DDX54	100	84.163	Ursus_americanus
MGP_CAROLIEiJ_G0027665	Ddx54	88	88.991	ENSUMAG00000010245	DDX54	95	93.590	Ursus_maritimus
MGP_CAROLIEiJ_G0027665	Ddx54	100	85.455	ENSVVUG00000010212	DDX54	100	85.358	Vulpes_vulpes
MGP_CAROLIEiJ_G0027665	Ddx54	98	63.341	ENSXETG00000016410	ddx54	98	62.967	Xenopus_tropicalis
MGP_CAROLIEiJ_G0027665	Ddx54	95	61.657	ENSXCOG00000002909	ddx54	97	61.602	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0027665	Ddx54	95	61.820	ENSXMAG00000005312	ddx54	97	61.702	Xiphophorus_maculatus