EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
MGP_CAROLIEiJ_G0027749 (Gene tree)
Gene ID
110294796
Gene Symbol
Sbno1
Alias
9330180L10Rik|sno
Full Name
strawberry notch homolog 1
Gene Type
protein_coding
Species
Mus_caroli
Status
putative
Strand
Minus strand
Length
56529 bases
Position
chr5:117367400-117423928
Accession
110294796
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_CAROLIEiJ_P0070852ResIIIPF04851.152e-0711
MGP_CAROLIEiJ_P0070848ResIIIPF04851.152.3e-0711
MGP_CAROLIEiJ_P0070850ResIIIPF04851.152.6e-0711
MGP_CAROLIEiJ_P0070841ResIIIPF04851.153.8e-0711
MGP_CAROLIEiJ_P0070842ResIIIPF04851.153.8e-0711
MGP_CAROLIEiJ_P0070843ResIIIPF04851.153.8e-0711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_CAROLIEiJ_T0070841-10028-MGP_CAROLIEiJ_P00708411390 (aa)XP_021018924UPI000A3180C1
MGP_CAROLIEiJ_T0070852-2100-MGP_CAROLIEiJ_P0070852663 (aa)--
MGP_CAROLIEiJ_T0070843-4167-MGP_CAROLIEiJ_P00708431389 (aa)XP_021018927UPI000A31AD91
MGP_CAROLIEiJ_T0070842-10118-MGP_CAROLIEiJ_P00708421390 (aa)XP_021018924UPI000A3180C1
MGP_CAROLIEiJ_T0070845-977--- (aa)--
MGP_CAROLIEiJ_T0070844-1061--- (aa)--
MGP_CAROLIEiJ_T0070847-1526--- (aa)--
MGP_CAROLIEiJ_T0070846-656--- (aa)--
MGP_CAROLIEiJ_T0070849-591--- (aa)--
MGP_CAROLIEiJ_T0070848-2410-MGP_CAROLIEiJ_P0070848754 (aa)--
MGP_CAROLIEiJ_T0070858-2014--- (aa)--
MGP_CAROLIEiJ_T0070855-772-MGP_CAROLIEiJ_P0070855211 (aa)--
MGP_CAROLIEiJ_T0070850-2508-MGP_CAROLIEiJ_P0070850784 (aa)--
MGP_CAROLIEiJ_T0070853-5277-MGP_CAROLIEiJ_P0070853263 (aa)--
MGP_CAROLIEiJ_T0070851-1170--- (aa)--
MGP_CAROLIEiJ_T0070856-599-MGP_CAROLIEiJ_P0070856133 (aa)--
MGP_CAROLIEiJ_T0070854-1224-MGP_CAROLIEiJ_P0070854241 (aa)--
MGP_CAROLIEiJ_T0070857-353-MGP_CAROLIEiJ_P007085792 (aa)-UPI000620A984
Gene Model
Click here to download MGP_CAROLIEiJ_G0027749's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0027749's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_CAROLIEiJ_G0027749Sbno19997.198ENSG00000139697SBNO19997.198Homo_sapiens
MGP_CAROLIEiJ_G0027749Sbno19590.789ENSAPOG00000003196sbno19881.245Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0027749Sbno19997.133ENSAMEG00000015151SBNO19997.133Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0027749Sbno19590.789ENSACIG00000008088sbno19974.205Amphilophus_citrinellus
MGP_CAROLIEiJ_G0027749Sbno19590.789ENSAOCG00000014859sbno19975.159Amphiprion_ocellaris
MGP_CAROLIEiJ_G0027749Sbno19590.789ENSAPEG00000006069sbno19975.159Amphiprion_percula
MGP_CAROLIEiJ_G0027749Sbno19589.912ENSATEG00000006667sbno19976.073Anabas_testudineus
MGP_CAROLIEiJ_G0027749Sbno19597.368ENSAPLG00000015674SBNO19991.954Anas_platyrhynchos
MGP_CAROLIEiJ_G0027749Sbno19596.053ENSACAG00000015441SBNO18886.762Anolis_carolinensis
MGP_CAROLIEiJ_G0027749Sbno110097.134ENSANAG00000029958-9998.913Aotus_nancymaae
MGP_CAROLIEiJ_G0027749Sbno19590.351ENSACLG00000024913sbno19974.803Astatotilapia_calliptera
MGP_CAROLIEiJ_G0027749Sbno19592.105ENSAMXG00000019473sbno19980.257Astyanax_mexicanus
MGP_CAROLIEiJ_G0027749Sbno110098.193ENSBTAG00000020505SBNO19997.198Bos_taurus
MGP_CAROLIEiJ_G0027749Sbno110097.134ENSCJAG00000016599SBNO19996.983Callithrix_jacchus
MGP_CAROLIEiJ_G0027749Sbno19997.059ENSCAFG00000007503SBNO19997.139Canis_familiaris
MGP_CAROLIEiJ_G0027749Sbno19998.336ENSCAFG00020015363SBNO19996.739Canis_lupus_dingo
MGP_CAROLIEiJ_G0027749Sbno19998.033ENSCHIG00000008382SBNO19998.551Capra_hircus
MGP_CAROLIEiJ_G0027749Sbno110097.888ENSTSYG00000012749SBNO19997.270Carlito_syrichta
MGP_CAROLIEiJ_G0027749Sbno19598.684ENSCAPG00000000384SBNO19999.094Cavia_aperea
MGP_CAROLIEiJ_G0027749Sbno19996.974ENSCPOG00000008109SBNO19999.094Cavia_porcellus
MGP_CAROLIEiJ_G0027749Sbno110097.285ENSCCAG00000035316SBNO19992.606Cebus_capucinus
MGP_CAROLIEiJ_G0027749Sbno19599.561ENSCATG00000008239SBNO19899.457Cercocebus_atys
MGP_CAROLIEiJ_G0027749Sbno19997.126ENSCLAG00000008995SBNO19999.457Chinchilla_lanigera
MGP_CAROLIEiJ_G0027749Sbno19599.561ENSCSAG00000002064SBNO19998.012Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0027749Sbno19599.561ENSCHOG00000008814SBNO19693.455Choloepus_hoffmanni
MGP_CAROLIEiJ_G0027749Sbno19597.368ENSCPBG00000025968SBNO19991.876Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0027749Sbno19994.127ENSCANG00000042688-9991.966Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0027749Sbno19999.545ENSCGRG00001017470Sbno19998.732Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0027749Sbno19999.545ENSCGRG00000004756Sbno19998.732Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0027749Sbno19590.351ENSCSEG00000011919sbno19975.529Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0027749Sbno19591.228ENSCVAG00000007038sbno19975.828Cyprinodon_variegatus
MGP_CAROLIEiJ_G0027749Sbno19593.421ENSDARG00000099080sbno19980.100Danio_rerio
MGP_CAROLIEiJ_G0027749Sbno19599.561ENSDNOG00000017147SBNO19896.814Dasypus_novemcinctus
MGP_CAROLIEiJ_G0027749Sbno19983.931ENSDORG00000015261Sbno19983.931Dipodomys_ordii
MGP_CAROLIEiJ_G0027749Sbno19599.561ENSETEG00000005620SBNO19390.566Echinops_telfairi
MGP_CAROLIEiJ_G0027749Sbno19585.965ENSEBUG00000013823sbno19362.326Eptatretus_burgeri
MGP_CAROLIEiJ_G0027749Sbno110098.494ENSEASG00005012595-9298.220Equus_asinus_asinus
MGP_CAROLIEiJ_G0027749Sbno110097.078ENSECAG00000006127SBNO19997.628Equus_caballus
MGP_CAROLIEiJ_G0027749Sbno18398.352ENSEEUG00000003793SBNO18398.352Erinaceus_europaeus
MGP_CAROLIEiJ_G0027749Sbno19590.789ENSELUG00000002886sbno19977.817Esox_lucius
MGP_CAROLIEiJ_G0027749Sbno110097.559ENSFCAG00000015331SBNO110097.559Felis_catus
MGP_CAROLIEiJ_G0027749Sbno19596.930ENSFALG00000009273SBNO19991.810Ficedula_albicollis
MGP_CAROLIEiJ_G0027749Sbno19996.974ENSFDAG00000014232SBNO19995.109Fukomys_damarensis
MGP_CAROLIEiJ_G0027749Sbno19590.789ENSFHEG00000007360sbno19975.865Fundulus_heteroclitus
MGP_CAROLIEiJ_G0027749Sbno19590.789ENSGMOG00000018229sbno19978.593Gadus_morhua
MGP_CAROLIEiJ_G0027749Sbno19597.368ENSGALG00000003392SBNO19992.033Gallus_gallus
MGP_CAROLIEiJ_G0027749Sbno19591.228ENSGAFG00000003960sbno19975.473Gambusia_affinis
MGP_CAROLIEiJ_G0027749Sbno19590.351ENSGACG00000015633sbno19978.843Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0027749Sbno19795.009ENSGAGG00000001065SBNO19991.017Gopherus_agassizii
MGP_CAROLIEiJ_G0027749Sbno110097.134ENSGGOG00000015000SBNO19999.457Gorilla_gorilla
MGP_CAROLIEiJ_G0027749Sbno19589.912ENSHBUG00000011910sbno19969.121Haplochromis_burtoni
MGP_CAROLIEiJ_G0027749Sbno19996.336ENSHGLG00000014165-9999.094Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0027749Sbno19589.474ENSHCOG00000003246sbno19584.783Hippocampus_comes
MGP_CAROLIEiJ_G0027749Sbno19590.789ENSIPUG00000015830Sbno19878.704Ictalurus_punctatus
MGP_CAROLIEiJ_G0027749Sbno110097.888ENSSTOG00000023221SBNO19999.275Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0027749Sbno19998.039ENSJJAG00000001741Sbno19997.270Jaculus_jaculus
MGP_CAROLIEiJ_G0027749Sbno19591.228ENSKMAG00000009696sbno19975.265Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0027749Sbno19591.228ENSLBEG00000007623sbno19976.599Labrus_bergylta
MGP_CAROLIEiJ_G0027749Sbno19495.595ENSLACG00000017227SBNO19983.306Latimeria_chalumnae
MGP_CAROLIEiJ_G0027749Sbno19592.544ENSLOCG00000005725sbno19781.779Lepisosteus_oculatus
MGP_CAROLIEiJ_G0027749Sbno19996.264ENSLAFG00000002135SBNO19996.408Loxodonta_africana
MGP_CAROLIEiJ_G0027749Sbno110097.134ENSMFAG00000031429SBNO19997.126Macaca_fascicularis
MGP_CAROLIEiJ_G0027749Sbno110097.134ENSMMUG00000011496SBNO19997.126Macaca_mulatta
MGP_CAROLIEiJ_G0027749Sbno19599.561ENSMLEG00000033260SBNO19999.457Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0027749Sbno19590.789ENSMAMG00000005473sbno19975.476Mastacembelus_armatus
MGP_CAROLIEiJ_G0027749Sbno19597.368ENSMGAG00000003274SBNO19991.951Meleagris_gallopavo
MGP_CAROLIEiJ_G0027749Sbno110099.397ENSMAUG00000004834-10099.397Mesocricetus_auratus
MGP_CAROLIEiJ_G0027749Sbno110097.888ENSMICG00000006573-9996.377Microcebus_murinus
MGP_CAROLIEiJ_G0027749Sbno19999.242ENSMOCG00000009390Sbno19994.756Microtus_ochrogaster
MGP_CAROLIEiJ_G0027749Sbno19490.749ENSMMOG00000008691sbno19971.590Mola_mola
MGP_CAROLIEiJ_G0027749Sbno110093.683ENSMODG00000012470SBNO19994.042Monodelphis_domestica
MGP_CAROLIEiJ_G0027749Sbno19590.789ENSMALG00000001056sbno19975.615Monopterus_albus
MGP_CAROLIEiJ_G0027749Sbno110099.548ENSMUSG00000038095Sbno110099.548Mus_musculus
MGP_CAROLIEiJ_G0027749Sbno110099.397MGP_PahariEiJ_G0024329Sbno110099.397Mus_pahari
MGP_CAROLIEiJ_G0027749Sbno110099.568MGP_SPRETEiJ_G0028747Sbno110099.568Mus_spretus
MGP_CAROLIEiJ_G0027749Sbno110096.823ENSMPUG00000001658SBNO19997.629Mustela_putorius_furo
MGP_CAROLIEiJ_G0027749Sbno19996.839ENSMLUG00000017159SBNO19996.839Myotis_lucifugus
MGP_CAROLIEiJ_G0027749Sbno19998.941ENSNGAG00000012620Sbno19899.211Nannospalax_galili
MGP_CAROLIEiJ_G0027749Sbno19590.351ENSNBRG00000019189sbno19974.390Neolamprologus_brichardi
MGP_CAROLIEiJ_G0027749Sbno110097.436ENSNLEG00000001502SBNO19993.175Nomascus_leucogenys
MGP_CAROLIEiJ_G0027749Sbno19497.797ENSMEUG00000008768-9385.443Notamacropus_eugenii
MGP_CAROLIEiJ_G0027749Sbno19598.246ENSOPRG00000011054SBNO19992.821Ochotona_princeps
MGP_CAROLIEiJ_G0027749Sbno19997.126ENSODEG00000009997SBNO19999.094Octodon_degus
MGP_CAROLIEiJ_G0027749Sbno19590.351ENSONIG00000015348sbno19975.617Oreochromis_niloticus
MGP_CAROLIEiJ_G0027749Sbno195100.000ENSOCUG00000002441SBNO19595.547Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0027749Sbno19591.228ENSORLG00000001593sbno19975.328Oryzias_latipes
MGP_CAROLIEiJ_G0027749Sbno19591.228ENSORLG00020015216sbno19975.405Oryzias_latipes_hni
MGP_CAROLIEiJ_G0027749Sbno19591.228ENSORLG00015002726sbno19975.335Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0027749Sbno19591.228ENSOMEG00000019313sbno19975.212Oryzias_melastigma
MGP_CAROLIEiJ_G0027749Sbno19599.561ENSOGAG00000010781-10094.127Otolemur_garnettii
MGP_CAROLIEiJ_G0027749Sbno19996.841ENSOARG00000004404SBNO19996.841Ovis_aries
MGP_CAROLIEiJ_G0027749Sbno110097.285ENSPPAG00000024635SBNO19999.275Pan_paniscus
MGP_CAROLIEiJ_G0027749Sbno110097.559ENSPPRG00000022092SBNO110097.559Panthera_pardus
MGP_CAROLIEiJ_G0027749Sbno19997.268ENSPTIG00000017803SBNO19997.268Panthera_tigris_altaica
MGP_CAROLIEiJ_G0027749Sbno110097.285ENSPTRG00000005597SBNO19999.457Pan_troglodytes
MGP_CAROLIEiJ_G0027749Sbno110097.134ENSPANG00000011640SBNO19999.457Papio_anubis
MGP_CAROLIEiJ_G0027749Sbno19591.667ENSPKIG00000001441sbno19980.029Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0027749Sbno110092.006ENSPSIG00000009572-9991.117Pelodiscus_sinensis
MGP_CAROLIEiJ_G0027749Sbno19591.667ENSPSIG00000009256-10087.393Pelodiscus_sinensis
MGP_CAROLIEiJ_G0027749Sbno19384.375ENSPMGG00000017196sbno19382.222Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0027749Sbno19998.939ENSPEMG00000016087Sbno19998.732Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0027749Sbno18986.512ENSPMAG00000007246-10060.996Petromyzon_marinus
MGP_CAROLIEiJ_G0027749Sbno110094.436ENSPCIG00000010985SBNO110093.687Phascolarctos_cinereus
MGP_CAROLIEiJ_G0027749Sbno19591.667ENSPFOG00000005069sbno19975.719Poecilia_formosa
MGP_CAROLIEiJ_G0027749Sbno19591.667ENSPLAG00000015015sbno19975.806Poecilia_latipinna
MGP_CAROLIEiJ_G0027749Sbno19591.667ENSPMEG00000021212sbno19975.719Poecilia_mexicana
MGP_CAROLIEiJ_G0027749Sbno19591.228ENSPREG00000017746sbno19975.439Poecilia_reticulata
MGP_CAROLIEiJ_G0027749Sbno19996.837ENSPPYG00000005084SBNO19996.837Pongo_abelii
MGP_CAROLIEiJ_G0027749Sbno19599.561ENSPCAG00000008634SBNO18891.862Procavia_capensis
MGP_CAROLIEiJ_G0027749Sbno110097.738ENSPCOG00000024277SBNO19999.271Propithecus_coquereli
MGP_CAROLIEiJ_G0027749Sbno19599.123ENSPVAG00000015304SBNO18799.006Pteropus_vampyrus
MGP_CAROLIEiJ_G0027749Sbno19590.351ENSPNYG00000004291sbno19975.794Pundamilia_nyererei
MGP_CAROLIEiJ_G0027749Sbno19592.105ENSPNAG00000015622sbno19978.861Pygocentrus_nattereri
MGP_CAROLIEiJ_G0027749Sbno110098.707ENSRNOG00000001064Sbno110098.707Rattus_norvegicus
MGP_CAROLIEiJ_G0027749Sbno110097.285ENSRROG00000034230SBNO19999.457Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0027749Sbno19599.561ENSSBOG00000015422SBNO19991.958Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0027749Sbno19592.544ENSSFOG00015019025sbno19979.771Scleropages_formosus
MGP_CAROLIEiJ_G0027749Sbno19591.228ENSSMAG00000013640sbno19975.794Scophthalmus_maximus
MGP_CAROLIEiJ_G0027749Sbno19591.228ENSSDUG00000023480sbno19975.969Seriola_dumerili
MGP_CAROLIEiJ_G0027749Sbno19591.228ENSSLDG00000007928sbno19975.899Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0027749Sbno19599.561ENSSARG00000002594SBNO18997.731Sorex_araneus
MGP_CAROLIEiJ_G0027749Sbno19596.491ENSSPUG00000012640SBNO19988.713Sphenodon_punctatus
MGP_CAROLIEiJ_G0027749Sbno19590.351ENSSPAG00000016244sbno19974.738Stegastes_partitus
MGP_CAROLIEiJ_G0027749Sbno110098.193ENSSSCG00000009776SBNO19997.486Sus_scrofa
MGP_CAROLIEiJ_G0027749Sbno19596.930ENSTGUG00000005380SBNO19991.667Taeniopygia_guttata
MGP_CAROLIEiJ_G0027749Sbno19590.789ENSTRUG00000018490sbno110075.474Takifugu_rubripes
MGP_CAROLIEiJ_G0027749Sbno19590.789ENSTNIG00000013506sbno19970.984Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0027749Sbno110096.696ENSUAMG00000019671SBNO19997.486Ursus_americanus
MGP_CAROLIEiJ_G0027749Sbno110096.696ENSUMAG00000004002SBNO19997.486Ursus_maritimus
MGP_CAROLIEiJ_G0027749Sbno110091.741ENSVPAG00000007024SBNO19593.333Vicugna_pacos
MGP_CAROLIEiJ_G0027749Sbno19997.270ENSVVUG00000027807SBNO19997.270Vulpes_vulpes
MGP_CAROLIEiJ_G0027749Sbno19595.175ENSXETG00000031930SBNO110082.168Xenopus_tropicalis
MGP_CAROLIEiJ_G0027749Sbno19591.667ENSXCOG00000011607sbno19674.265Xiphophorus_couchianus
MGP_CAROLIEiJ_G0027749Sbno19591.667ENSXMAG00000002140sbno19975.630Xiphophorus_maculatus

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