EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0027780 (Gene tree)
Gene ID: 110294719
Gene Symbol: Sfswap
Alias: 1190005N23Rik|6330437E22Rik|Sfrs8
Full Name: splicing factor SWAP
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 71819 bases
Position: chr5:122371450-122443268
Accession: 110294719
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0071020	DRY_EERY	PF09750.9	1.2e-32	1	1
MGP_CAROLIEiJ_P0071020	Surp	PF01805.20	8.7e-27	1	2
MGP_CAROLIEiJ_P0071020	Surp	PF01805.20	8.7e-27	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0071028	-	716	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0071029	-	559	-	MGP_CAROLIEiJ_P0071029	68 (aa)	-	-
MGP_CAROLIEiJ_T0071020	-	3325	XM_021163130	MGP_CAROLIEiJ_P0071020	945 (aa)	XP_021018789	UPI000A3158F7
MGP_CAROLIEiJ_T0071021	-	2625	-	MGP_CAROLIEiJ_P0071021	121 (aa)	-	UPI000620AB78
MGP_CAROLIEiJ_T0071022	-	3387	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0071023	-	5135	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0071024	-	436	-	MGP_CAROLIEiJ_P0071024	82 (aa)	-	-
MGP_CAROLIEiJ_T0071025	-	651	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0071026	-	690	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0071027	-	305	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0071034	-	681	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0071033	-	689	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0071032	-	1289	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0071031	-	426	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0071030	-	2120	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0027780's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0027780's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0027780	Sfswap	68	37.805	ENSG00000104859	CLASRP	53	47.826	Homo_sapiens
MGP_CAROLIEiJ_G0027780	Sfswap	100	90.909	ENSG00000061936	SFSWAP	100	90.909	Homo_sapiens
MGP_CAROLIEiJ_G0027780	Sfswap	84	64.423	ENSAPOG00000005784	sfswap	88	80.952	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0027780	Sfswap	94	90.351	ENSAMEG00000013818	SFSWAP	52	83.984	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0027780	Sfswap	84	64.423	ENSACIG00000009240	-	68	80.000	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0027780	Sfswap	67	77.778	ENSAOCG00000016469	sfswap	89	68.835	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0027780	Sfswap	67	77.778	ENSAPEG00000004965	sfswap	97	50.961	Amphiprion_percula
MGP_CAROLIEiJ_G0027780	Sfswap	76	81.818	ENSATEG00000021053	sfswap	56	62.654	Anabas_testudineus
MGP_CAROLIEiJ_G0027780	Sfswap	100	75.758	ENSAPLG00000013808	SFSWAP	97	77.023	Anas_platyrhynchos
MGP_CAROLIEiJ_G0027780	Sfswap	100	88.211	ENSANAG00000001518	SFSWAP	100	88.211	Aotus_nancymaae
MGP_CAROLIEiJ_G0027780	Sfswap	84	64.423	ENSACLG00000020159	sfswap	84	67.209	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0027780	Sfswap	100	87.869	ENSBTAG00000000439	SFSWAP	100	87.658	Bos_taurus
MGP_CAROLIEiJ_G0027780	Sfswap	100	88.514	ENSCJAG00000003613	SFSWAP	100	87.671	Callithrix_jacchus
MGP_CAROLIEiJ_G0027780	Sfswap	100	86.047	ENSCAFG00000006625	SFSWAP	100	86.258	Canis_familiaris
MGP_CAROLIEiJ_G0027780	Sfswap	87	79.218	ENSCAFG00020011254	SFSWAP	99	79.336	Canis_lupus_dingo
MGP_CAROLIEiJ_G0027780	Sfswap	100	87.764	ENSCHIG00000008838	SFSWAP	100	87.553	Capra_hircus
MGP_CAROLIEiJ_G0027780	Sfswap	100	88.186	ENSTSYG00000010303	SFSWAP	100	88.819	Carlito_syrichta
MGP_CAROLIEiJ_G0027780	Sfswap	92	87.343	ENSCAPG00000004394	SFSWAP	96	88.141	Cavia_aperea
MGP_CAROLIEiJ_G0027780	Sfswap	94	95.614	ENSCPOG00000005280	SFSWAP	100	88.303	Cavia_porcellus
MGP_CAROLIEiJ_G0027780	Sfswap	100	87.987	ENSCCAG00000037255	SFSWAP	100	87.460	Cebus_capucinus
MGP_CAROLIEiJ_G0027780	Sfswap	100	89.241	ENSCATG00000031094	SFSWAP	100	89.346	Cercocebus_atys
MGP_CAROLIEiJ_G0027780	Sfswap	94	96.491	ENSCLAG00000008380	SFSWAP	100	90.401	Chinchilla_lanigera
MGP_CAROLIEiJ_G0027780	Sfswap	100	89.030	ENSCSAG00000001884	SFSWAP	100	89.135	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0027780	Sfswap	92	73.007	ENSCHOG00000003578	SFSWAP	100	73.121	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0027780	Sfswap	100	89.241	ENSCANG00000036501	SFSWAP	100	89.346	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0027780	Sfswap	100	96.614	ENSCGRG00001011284	Sfswap	100	96.614	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0027780	Sfswap	100	96.614	ENSCGRG00000017417	Sfswap	100	96.614	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0027780	Sfswap	52	59.740	ENSCVAG00000001205	-	72	48.577	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0027780	Sfswap	100	59.504	ENSCVAG00000001208	-	100	59.504	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0027780	Sfswap	94	89.474	ENSDNOG00000018742	SFSWAP	100	84.480	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0027780	Sfswap	97	83.115	ENSDORG00000010352	Sfswap	99	82.244	Dipodomys_ordii
MGP_CAROLIEiJ_G0027780	Sfswap	68	56.627	FBgn0003638	su(w[a])	56	55.556	Drosophila_melanogaster
MGP_CAROLIEiJ_G0027780	Sfswap	86	69.697	ENSETEG00000016657	-	91	70.034	Echinops_telfairi
MGP_CAROLIEiJ_G0027780	Sfswap	84	38.100	ENSEBUG00000016748	SFSWAP	93	43.046	Eptatretus_burgeri
MGP_CAROLIEiJ_G0027780	Sfswap	100	87.342	ENSEASG00005016502	SFSWAP	100	87.764	Equus_asinus_asinus
MGP_CAROLIEiJ_G0027780	Sfswap	98	87.055	ENSECAG00000007657	SFSWAP	99	87.487	Equus_caballus
MGP_CAROLIEiJ_G0027780	Sfswap	86	73.807	ENSEEUG00000001713	SFSWAP	99	73.497	Erinaceus_europaeus
MGP_CAROLIEiJ_G0027780	Sfswap	94	66.667	ENSELUG00000010942	sfswap	99	63.990	Esox_lucius
MGP_CAROLIEiJ_G0027780	Sfswap	100	86.167	ENSFCAG00000010778	SFSWAP	100	86.484	Felis_catus
MGP_CAROLIEiJ_G0027780	Sfswap	100	75.333	ENSFALG00000009577	SFSWAP	51	76.518	Ficedula_albicollis
MGP_CAROLIEiJ_G0027780	Sfswap	94	96.491	ENSFDAG00000017235	SFSWAP	100	89.391	Fukomys_damarensis
MGP_CAROLIEiJ_G0027780	Sfswap	94	61.404	ENSFHEG00000011149	-	99	55.679	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0027780	Sfswap	67	77.778	ENSGMOG00000009205	sfswap	76	70.199	Gadus_morhua
MGP_CAROLIEiJ_G0027780	Sfswap	97	76.907	ENSGALG00000002487	SFSWAP	97	76.882	Gallus_gallus
MGP_CAROLIEiJ_G0027780	Sfswap	67	77.778	ENSGAFG00000006272	sfswap	89	67.480	Gambusia_affinis
MGP_CAROLIEiJ_G0027780	Sfswap	77	72.549	ENSGACG00000017647	sfswap	99	53.583	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0027780	Sfswap	100	73.212	ENSGAGG00000002611	SFSWAP	52	72.674	Gopherus_agassizii
MGP_CAROLIEiJ_G0027780	Sfswap	100	88.644	ENSGGOG00000014877	SFSWAP	100	89.064	Gorilla_gorilla
MGP_CAROLIEiJ_G0027780	Sfswap	100	90.612	ENSHGLG00000019216	SFSWAP	100	90.717	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0027780	Sfswap	100	90.401	ENSHGLG00100019350	SFSWAP	100	90.506	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0027780	Sfswap	84	62.857	ENSHCOG00000009475	sfswap	97	50.663	Hippocampus_comes
MGP_CAROLIEiJ_G0027780	Sfswap	92	67.419	ENSIPUG00000010598	sfswap	99	51.668	Ictalurus_punctatus
MGP_CAROLIEiJ_G0027780	Sfswap	100	89.652	ENSSTOG00000000773	SFSWAP	100	89.652	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0027780	Sfswap	100	90.928	ENSJJAG00000006609	Sfswap	100	91.034	Jaculus_jaculus
MGP_CAROLIEiJ_G0027780	Sfswap	67	77.778	ENSKMAG00000013168	sfswap	88	66.033	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0027780	Sfswap	100	65.123	ENSLACG00000018678	SFSWAP	96	65.310	Latimeria_chalumnae
MGP_CAROLIEiJ_G0027780	Sfswap	92	84.932	ENSLAFG00000014462	SFSWAP	100	85.274	Loxodonta_africana
MGP_CAROLIEiJ_G0027780	Sfswap	98	89.213	ENSMFAG00000037352	SFSWAP	100	81.854	Macaca_fascicularis
MGP_CAROLIEiJ_G0027780	Sfswap	100	89.346	ENSMMUG00000020343	SFSWAP	100	89.030	Macaca_mulatta
MGP_CAROLIEiJ_G0027780	Sfswap	100	89.346	ENSMNEG00000041002	SFSWAP	100	89.030	Macaca_nemestrina
MGP_CAROLIEiJ_G0027780	Sfswap	100	87.025	ENSMLEG00000035728	SFSWAP	100	86.603	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0027780	Sfswap	88	62.500	ENSMZEG00005009699	-	88	65.094	Maylandia_zebra
MGP_CAROLIEiJ_G0027780	Sfswap	97	68.846	ENSMGAG00000002191	SFSWAP	97	70.092	Meleagris_gallopavo
MGP_CAROLIEiJ_G0027780	Sfswap	100	88.596	ENSMICG00000004465	SFSWAP	100	89.546	Microcebus_murinus
MGP_CAROLIEiJ_G0027780	Sfswap	100	96.296	ENSMOCG00000014390	Sfswap	100	96.296	Microtus_ochrogaster
MGP_CAROLIEiJ_G0027780	Sfswap	84	49.057	ENSMMOG00000021053	-	76	64.685	Mola_mola
MGP_CAROLIEiJ_G0027780	Sfswap	67	77.778	ENSMALG00000012603	sfswap	97	49.741	Monopterus_albus
MGP_CAROLIEiJ_G0027780	Sfswap	100	100.000	ENSMUSG00000029439	Sfswap	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0027780	Sfswap	100	99.174	MGP_PahariEiJ_G0024360	Sfswap	100	99.174	Mus_pahari
MGP_CAROLIEiJ_G0027780	Sfswap	100	100.000	MGP_SPRETEiJ_G0028779	Sfswap	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0027780	Sfswap	100	85.412	ENSMPUG00000002218	SFSWAP	100	85.307	Mustela_putorius_furo
MGP_CAROLIEiJ_G0027780	Sfswap	94	89.474	ENSMLUG00000011296	SFSWAP	100	77.060	Myotis_lucifugus
MGP_CAROLIEiJ_G0027780	Sfswap	100	92.608	ENSNGAG00000018167	Sfswap	100	92.608	Nannospalax_galili
MGP_CAROLIEiJ_G0027780	Sfswap	68	57.864	ENSNBRG00000020857	sfswap	91	66.269	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0027780	Sfswap	100	86.632	ENSNLEG00000008386	SFSWAP	100	86.737	Nomascus_leucogenys
MGP_CAROLIEiJ_G0027780	Sfswap	71	86.957	ENSMEUG00000009556	-	79	86.957	Notamacropus_eugenii
MGP_CAROLIEiJ_G0027780	Sfswap	100	74.105	ENSOPRG00000006983	-	100	74.105	Ochotona_princeps
MGP_CAROLIEiJ_G0027780	Sfswap	100	90.084	ENSODEG00000008020	SFSWAP	100	90.084	Octodon_degus
MGP_CAROLIEiJ_G0027780	Sfswap	96	53.320	ENSONIG00000003757	sfswap	99	52.090	Oreochromis_niloticus
MGP_CAROLIEiJ_G0027780	Sfswap	51	79.141	ENSOANG00000013861	SFSWAP	100	82.212	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0027780	Sfswap	94	92.982	ENSOCUG00000002165	SFSWAP	100	84.401	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0027780	Sfswap	67	77.778	ENSOMEG00000022065	sfswap	89	67.568	Oryzias_melastigma
MGP_CAROLIEiJ_G0027780	Sfswap	94	90.351	ENSOGAG00000016724	SFSWAP	99	88.076	Otolemur_garnettii
MGP_CAROLIEiJ_G0027780	Sfswap	100	87.263	ENSOARG00000014314	SFSWAP	100	87.053	Ovis_aries
MGP_CAROLIEiJ_G0027780	Sfswap	100	88.433	ENSPPAG00000036706	SFSWAP	100	88.854	Pan_paniscus
MGP_CAROLIEiJ_G0027780	Sfswap	94	87.719	ENSPTIG00000004304	SFSWAP	97	86.466	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0027780	Sfswap	100	88.223	ENSPTRG00000005640	SFSWAP	100	88.644	Pan_troglodytes
MGP_CAROLIEiJ_G0027780	Sfswap	100	89.241	ENSPANG00000019737	SFSWAP	100	89.346	Papio_anubis
MGP_CAROLIEiJ_G0027780	Sfswap	84	70.192	ENSPKIG00000008327	sfswap	100	53.963	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0027780	Sfswap	61	62.835	ENSPSIG00000017807	SFSWAP	86	65.568	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0027780	Sfswap	100	59.350	ENSPMGG00000008093	-	97	59.016	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0027780	Sfswap	100	96.089	ENSPEMG00000001237	Sfswap	100	96.089	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0027780	Sfswap	71	75.581	ENSPMAG00000008279	sfswap	77	62.535	Petromyzon_marinus
MGP_CAROLIEiJ_G0027780	Sfswap	94	60.526	ENSPFOG00000019657	sfswap	50	47.992	Poecilia_formosa
MGP_CAROLIEiJ_G0027780	Sfswap	94	60.526	ENSPLAG00000008513	sfswap	91	63.591	Poecilia_latipinna
MGP_CAROLIEiJ_G0027780	Sfswap	94	60.526	ENSPMEG00000008716	sfswap	53	47.358	Poecilia_mexicana
MGP_CAROLIEiJ_G0027780	Sfswap	94	60.526	ENSPREG00000006692	sfswap	90	64.327	Poecilia_reticulata
MGP_CAROLIEiJ_G0027780	Sfswap	98	88.210	ENSPPYG00000005129	SFSWAP	100	88.532	Pongo_abelii
MGP_CAROLIEiJ_G0027780	Sfswap	94	90.351	ENSPCAG00000004977	-	65	87.500	Procavia_capensis
MGP_CAROLIEiJ_G0027780	Sfswap	100	87.975	ENSPCOG00000023786	SFSWAP	100	89.241	Propithecus_coquereli
MGP_CAROLIEiJ_G0027780	Sfswap	94	89.474	ENSPVAG00000014918	SFSWAP	92	85.522	Pteropus_vampyrus
MGP_CAROLIEiJ_G0027780	Sfswap	84	64.423	ENSPNYG00000012660	sfswap	53	66.938	Pundamilia_nyererei
MGP_CAROLIEiJ_G0027780	Sfswap	100	95.767	ENSRNOG00000000931	Sfswap	99	98.678	Rattus_norvegicus
MGP_CAROLIEiJ_G0027780	Sfswap	94	92.105	ENSRBIG00000036330	SFSWAP	100	83.544	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0027780	Sfswap	100	88.924	ENSRROG00000032001	SFSWAP	100	89.030	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0027780	Sfswap	100	87.566	ENSSBOG00000026217	SFSWAP	100	87.960	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0027780	Sfswap	92	80.791	ENSSHAG00000014232	SFSWAP	56	81.452	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0027780	Sfswap	67	75.309	ENSSMAG00000018718	sfswap	89	65.172	Scophthalmus_maximus
MGP_CAROLIEiJ_G0027780	Sfswap	67	79.012	ENSSDUG00000021680	sfswap	53	66.667	Seriola_dumerili
MGP_CAROLIEiJ_G0027780	Sfswap	67	79.012	ENSSLDG00000010835	sfswap	53	66.667	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0027780	Sfswap	78	87.379	ENSSARG00000000424	SFSWAP	85	87.379	Sorex_araneus
MGP_CAROLIEiJ_G0027780	Sfswap	87	73.855	ENSSPUG00000010272	SFSWAP	79	73.254	Sphenodon_punctatus
MGP_CAROLIEiJ_G0027780	Sfswap	100	87.474	ENSSSCG00000009744	SFSWAP	100	87.684	Sus_scrofa
MGP_CAROLIEiJ_G0027780	Sfswap	97	76.998	ENSTGUG00000004623	SFSWAP	53	75.304	Taeniopygia_guttata
MGP_CAROLIEiJ_G0027780	Sfswap	89	64.815	ENSTNIG00000006156	-	99	60.494	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0027780	Sfswap	54	90.625	ENSTBEG00000004983	-	66	90.625	Tupaia_belangeri
MGP_CAROLIEiJ_G0027780	Sfswap	94	90.351	ENSTTRG00000013478	SFSWAP	93	91.866	Tursiops_truncatus
MGP_CAROLIEiJ_G0027780	Sfswap	100	84.477	ENSUAMG00000016807	SFSWAP	100	77.555	Ursus_americanus
MGP_CAROLIEiJ_G0027780	Sfswap	94	90.351	ENSUMAG00000002957	SFSWAP	91	85.749	Ursus_maritimus
MGP_CAROLIEiJ_G0027780	Sfswap	94	89.474	ENSVPAG00000010479	-	51	95.918	Vicugna_pacos
MGP_CAROLIEiJ_G0027780	Sfswap	100	86.152	ENSVVUG00000010753	SFSWAP	100	86.364	Vulpes_vulpes
MGP_CAROLIEiJ_G0027780	Sfswap	84	63.208	ENSXCOG00000005131	sfswap	77	70.070	Xiphophorus_couchianus