EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0027851 (Gene tree)
Gene ID: 110294658
Gene Symbol: Polr2j
Alias: 14.5kDa|RNA polymerase II subunit RPB14|Rpb11a|Rpo2-4
Full Name: RNA polymerase II subunit J
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 6664 bases
Position: chr5:128968250-128974913
Accession: 110294658
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0071399	RNA_pol_L_2	PF13656.6	4.6e-29	1	1
MGP_CAROLIEiJ_P0071398	RNA_pol_L_2	PF13656.6	5.2e-29	1	1
MGP_CAROLIEiJ_P0071400	RNA_pol_L_2	PF13656.6	4.9e-18	1	1
MGP_CAROLIEiJ_P0071399	RNA_pol_L	PF01193.24	5.2e-10	1	1
MGP_CAROLIEiJ_P0071398	RNA_pol_L	PF01193.24	5.8e-10	1	1
MGP_CAROLIEiJ_P0071400	RNA_pol_L	PF01193.24	0.00039	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0071400	-	476	-	MGP_CAROLIEiJ_P0071400	87 (aa)	-	UPI00049D8D77
MGP_CAROLIEiJ_T0071398	-	648	XM_021163028	MGP_CAROLIEiJ_P0071398	117 (aa)	XP_021018687	UPI000000B2C2
MGP_CAROLIEiJ_T0071399	-	914	-	MGP_CAROLIEiJ_P0071399	111 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0027851's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0027851's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0027851	Polr2j	85	33.010	MGP_CAROLIEiJ_G0028034	Polr1d	77	33.010

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0027851	Polr2j	99	97.273	ENSG00000228049	POLR2J2	94	95.413	Homo_sapiens
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSG00000005075	POLR2J	100	100.000	Homo_sapiens
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSAPOG00000019538	polr2j	100	94.872	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0027851	Polr2j	98	99.083	ENSAMEG00000015480	-	100	92.126	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0027851	Polr2j	95	71.963	ENSACIG00000014549	POLR2J2	91	71.818	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.017	ENSAOCG00000006937	polr2j	100	94.017	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSAPEG00000021761	polr2j	100	94.872	Amphiprion_percula
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSATEG00000009731	polr2j	100	94.872	Anabas_testudineus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSATEG00000013312	-	100	94.872	Anabas_testudineus
MGP_CAROLIEiJ_G0027851	Polr2j	86	98.020	ENSAPLG00000003744	-	100	98.020	Anas_platyrhynchos
MGP_CAROLIEiJ_G0027851	Polr2j	100	90.598	ENSACAG00000000251	POLR2J	100	90.598	Anolis_carolinensis
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSACLG00000014564	polr2j	100	94.872	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0027851	Polr2j	100	96.581	ENSAMXG00000007517	polr2j	100	96.581	Astyanax_mexicanus
MGP_CAROLIEiJ_G0027851	Polr2j	66	68.493	ENSBTAG00000048046	-	61	68.493	Bos_taurus
MGP_CAROLIEiJ_G0027851	Polr2j	95	70.476	WBGene00012187	rpb-11	89	70.000	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSCJAG00000016203	-	100	100.000	Callithrix_jacchus
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSCAFG00000013683	-	100	100.000	Canis_familiaris
MGP_CAROLIEiJ_G0027851	Polr2j	85	100.000	ENSTSYG00000029243	-	85	100.000	Carlito_syrichta
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSCPOG00000001401	-	100	100.000	Cavia_porcellus
MGP_CAROLIEiJ_G0027851	Polr2j	100	98.851	ENSCATG00000016595	-	100	98.851	Cercocebus_atys
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSCLAG00000005238	-	100	100.000	Chinchilla_lanigera
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSCSAG00000018092	-	100	100.000	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0027851	Polr2j	100	81.197	ENSCING00000020531	-	100	81.197	Ciona_intestinalis
MGP_CAROLIEiJ_G0027851	Polr2j	100	81.197	ENSCSAVG00000006948	-	100	81.197	Ciona_savignyi
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSCGRG00001012814	Polr2j	100	100.000	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0027851	Polr2j	100	84.615	ENSCGRG00000008433	Polr2j	100	84.615	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.017	ENSCSEG00000020352	polr2j	100	94.017	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.017	ENSCVAG00000014267	polr2j	100	94.017	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0027851	Polr2j	100	95.726	ENSDARG00000035146	polr2j	100	95.726	Danio_rerio
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSDORG00000005934	Polr2j	100	100.000	Dipodomys_ordii
MGP_CAROLIEiJ_G0027851	Polr2j	98	78.261	FBgn0032634	Rpb11	98	78.261	Drosophila_melanogaster
MGP_CAROLIEiJ_G0027851	Polr2j	100	87.356	ENSEBUG00000016100	polr2j	100	87.356	Eptatretus_burgeri
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSEASG00005016864	-	100	100.000	Equus_asinus_asinus
MGP_CAROLIEiJ_G0027851	Polr2j	100	95.726	ENSELUG00000012822	polr2j	100	95.726	Esox_lucius
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSFCAG00000000377	-	100	100.000	Felis_catus
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSFALG00000009523	POLR2J	100	100.000	Ficedula_albicollis
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSFDAG00000010507	-	100	100.000	Fukomys_damarensis
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSFHEG00000006625	polr2j	100	94.872	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSGMOG00000018207	polr2j	100	94.872	Gadus_morhua
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSGALG00000030808	-	100	100.000	Gallus_gallus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSGAFG00000019555	polr2j	100	94.872	Gambusia_affinis
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSGACG00000003310	polr2j	100	94.872	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0027851	Polr2j	97	90.265	ENSGAGG00000018304	-	96	90.265	Gopherus_agassizii
MGP_CAROLIEiJ_G0027851	Polr2j	85	95.000	ENSGGOG00000004519	-	80	95.000	Gorilla_gorilla
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSHBUG00000008467	polr2j	100	94.872	Haplochromis_burtoni
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSHGLG00000013598	POLR2J	100	100.000	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSHGLG00100011242	POLR2J	100	100.000	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSHCOG00000014827	polr2j	68	94.872	Hippocampus_comes
MGP_CAROLIEiJ_G0027851	Polr2j	100	96.581	ENSIPUG00000023960	polr2j	100	96.581	Ictalurus_punctatus
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSSTOG00000006377	POLR2J	100	100.000	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSJJAG00000018834	-	100	94.872	Jaculus_jaculus
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSJJAG00000013854	-	100	100.000	Jaculus_jaculus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSKMAG00000014581	polr2j	79	94.872	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSLBEG00000005885	polr2j	100	94.872	Labrus_bergylta
MGP_CAROLIEiJ_G0027851	Polr2j	100	96.581	ENSLOCG00000001885	polr2j	89	96.581	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSLAFG00000021507	-	100	100.000	Loxodonta_africana
MGP_CAROLIEiJ_G0027851	Polr2j	100	98.851	ENSMMUG00000012019	POLR2J	100	98.851	Macaca_mulatta
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSMAMG00000009374	polr2j	100	94.872	Mastacembelus_armatus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSMZEG00005011932	polr2j	100	94.872	Maylandia_zebra
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSMGAG00000003534	POLR2J	100	100.000	Meleagris_gallopavo
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSMAUG00000013049	Polr2j	100	100.000	Mesocricetus_auratus
MGP_CAROLIEiJ_G0027851	Polr2j	87	91.753	ENSMICG00000026811	-	98	91.753	Microcebus_murinus
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSMOCG00000001294	Polr2j	100	100.000	Microtus_ochrogaster
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.017	ENSMMOG00000013265	polr2j	100	94.017	Mola_mola
MGP_CAROLIEiJ_G0027851	Polr2j	100	95.652	ENSMODG00000013617	-	100	91.406	Monodelphis_domestica
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSMALG00000020749	polr2j	100	94.872	Monopterus_albus
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSMUSG00000039771	Polr2j	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	MGP_PahariEiJ_G0024434	Polr2j	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	MGP_SPRETEiJ_G0028853	Polr2j	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSMLUG00000010467	POLR2J	100	100.000	Myotis_lucifugus
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSNGAG00000023412	Polr2j	100	100.000	Nannospalax_galili
MGP_CAROLIEiJ_G0027851	Polr2j	69	90.909	ENSNBRG00000006580	polr2j	59	90.909	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSODEG00000015648	-	100	100.000	Octodon_degus
MGP_CAROLIEiJ_G0027851	Polr2j	100	76.923	ENSODEG00000008559	-	100	76.923	Octodon_degus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSONIG00000000259	polr2j	100	94.872	Oreochromis_niloticus
MGP_CAROLIEiJ_G0027851	Polr2j	100	97.436	ENSOANG00000020912	POLR2J	100	97.436	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0027851	Polr2j	99	99.091	ENSOCUG00000023609	POLR2J	100	92.126	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSORLG00000029046	polr2j	83	94.872	Oryzias_latipes
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSORLG00020007625	polr2j	83	94.872	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSORLG00015003457	polr2j	83	94.872	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.017	ENSOMEG00000002097	polr2j	100	94.017	Oryzias_melastigma
MGP_CAROLIEiJ_G0027851	Polr2j	99	74.775	ENSOGAG00000008250	-	100	71.875	Otolemur_garnettii
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSOARG00000014204	-	98	100.000	Ovis_aries
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSPPRG00000012439	-	100	100.000	Panthera_pardus
MGP_CAROLIEiJ_G0027851	Polr2j	97	91.228	ENSPTIG00000018714	-	100	97.087	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0027851	Polr2j	85	99.000	ENSPSIG00000010173	-	100	99.000	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSPMGG00000021256	polr2j	100	94.872	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSPEMG00000015733	Polr2j	100	100.000	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSPCIG00000009026	-	100	100.000	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSPFOG00000012001	polr2j	99	94.872	Poecilia_formosa
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSPLAG00000014075	polr2j	100	94.872	Poecilia_latipinna
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSPMEG00000020585	polr2j	100	94.872	Poecilia_mexicana
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSPREG00000015255	polr2j	100	94.872	Poecilia_reticulata
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSPCOG00000024573	-	100	100.000	Propithecus_coquereli
MGP_CAROLIEiJ_G0027851	Polr2j	99	99.091	ENSPVAG00000017770	-	63	99.091	Pteropus_vampyrus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSPNYG00000014832	polr2j	100	94.872	Pundamilia_nyererei
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.017	ENSPNAG00000016595	polr2j	100	94.017	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSRNOG00000001430	Polr2j	100	100.000	Rattus_norvegicus
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSSBOG00000025579	-	100	100.000	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0027851	Polr2j	80	98.571	ENSSHAG00000010443	-	81	100.000	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0027851	Polr2j	96	96.262	ENSSFOG00015003371	polr2j	83	94.495	Scleropages_formosus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSSMAG00000006729	polr2j	100	94.872	Scophthalmus_maximus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSSDUG00000018490	polr2j	100	94.872	Seriola_dumerili
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSSLDG00000022354	polr2j	100	94.872	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSSPUG00000010802	-	100	100.000	Sphenodon_punctatus
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSSPAG00000021953	polr2j	100	94.872	Stegastes_partitus
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSSSCG00000007688	-	100	100.000	Sus_scrofa
MGP_CAROLIEiJ_G0027851	Polr2j	100	82.906	ENSSSCG00000003703	-	83	82.906	Sus_scrofa
MGP_CAROLIEiJ_G0027851	Polr2j	79	100.000	ENSTGUG00000004510	-	100	100.000	Taeniopygia_guttata
MGP_CAROLIEiJ_G0027851	Polr2j	85	99.000	ENSTGUG00000004501	-	100	99.000	Taeniopygia_guttata
MGP_CAROLIEiJ_G0027851	Polr2j	100	95.726	ENSTRUG00000020842	polr2j	100	95.726	Takifugu_rubripes
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSTNIG00000002994	polr2j	100	94.872	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0027851	Polr2j	100	80.180	ENSTBEG00000005797	-	73	80.180	Tupaia_belangeri
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSUAMG00000011310	-	100	100.000	Ursus_americanus
MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	ENSUMAG00000012594	-	100	100.000	Ursus_maritimus
MGP_CAROLIEiJ_G0027851	Polr2j	100	98.291	ENSXETG00000001108	polr2j	100	98.291	Xenopus_tropicalis
MGP_CAROLIEiJ_G0027851	Polr2j	100	94.872	ENSXMAG00000012422	polr2j	100	94.872	Xiphophorus_maculatus