EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0028011 (Gene tree)
Gene ID: 110294245
Gene Symbol: Ptcd1
Alias: 1110069M14Rik
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 17671 bases
Position: chr5:137842202-137859872
Accession: 110294245
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0072138	PPR	PF01535.20	2.9e-18	1	2
MGP_CAROLIEiJ_P0072138	PPR	PF01535.20	2.9e-18	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0072139	-	278	-	MGP_CAROLIEiJ_P0072139	20 (aa)	-	-
MGP_CAROLIEiJ_T0072138	-	3075	XM_021162332	MGP_CAROLIEiJ_P0072138	695 (aa)	XP_021017991	UPI000A319ABC

Gene Model

Click here to download MGP_CAROLIEiJ_G0028011's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0028011's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.170	ENSG00000106246	PTCD1	99	74.170	Homo_sapiens
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.170	ENSG00000248919	ATP5MF-PTCD1	92	74.170	Homo_sapiens
MGP_CAROLIEiJ_G0028011	Ptcd1	86	45.124	ENSAPOG00000010679	ptcd1	91	45.124	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	77.525	ENSAMEG00000006224	-	93	77.383	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0028011	Ptcd1	88	49.676	ENSACIG00000017861	ptcd1	88	49.029	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0028011	Ptcd1	85	46.612	ENSAOCG00000020741	-	83	47.098	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0028011	Ptcd1	80	45.936	ENSAOCG00000022617	ptcd1	82	45.936	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0028011	Ptcd1	85	46.446	ENSAPEG00000022632	ptcd1	83	46.932	Amphiprion_percula
MGP_CAROLIEiJ_G0028011	Ptcd1	88	48.529	ENSATEG00000007016	ptcd1	84	48.856	Anabas_testudineus
MGP_CAROLIEiJ_G0028011	Ptcd1	87	58.592	ENSAPLG00000006862	-	97	57.929	Anas_platyrhynchos
MGP_CAROLIEiJ_G0028011	Ptcd1	99	53.901	ENSACAG00000012871	-	92	53.901	Anolis_carolinensis
MGP_CAROLIEiJ_G0028011	Ptcd1	98	73.730	ENSANAG00000035790	-	100	73.585	Aotus_nancymaae
MGP_CAROLIEiJ_G0028011	Ptcd1	89	48.392	ENSACLG00000002824	ptcd1	85	47.428	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0028011	Ptcd1	86	48.403	ENSAMXG00000037292	ptcd1	87	48.083	Astyanax_mexicanus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.897	ENSBTAG00000020440	-	86	75.753	Bos_taurus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.425	ENSCJAG00000015815	-	99	74.425	Callithrix_jacchus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	76.580	ENSCAFG00000015055	-	92	76.437	Canis_familiaris
MGP_CAROLIEiJ_G0028011	Ptcd1	99	76.580	ENSCAFG00020014480	-	92	76.437	Canis_lupus_dingo
MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.396	ENSCHIG00000027000	-	98	75.252	Capra_hircus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.568	ENSTSYG00000029495	-	99	75.568	Carlito_syrichta
MGP_CAROLIEiJ_G0028011	Ptcd1	93	76.417	ENSCAPG00000014660	-	99	76.263	Cavia_aperea
MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.321	ENSCPOG00000001780	-	99	75.178	Cavia_porcellus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	72.845	ENSCCAG00000034025	-	99	73.458	Cebus_capucinus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.747	ENSCATG00000040859	-	99	74.747	Cercocebus_atys
MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.683	ENSCLAG00000006354	-	99	75.321	Chinchilla_lanigera
MGP_CAROLIEiJ_G0028011	Ptcd1	92	74.650	ENSCSAG00000017794	-	95	74.650	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0028011	Ptcd1	93	55.865	ENSCPBG00000020866	-	91	55.718	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0028011	Ptcd1	76	30.515	ENSCING00000007717	-	91	30.699	Ciona_intestinalis
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.096	ENSCANG00000023441	-	99	74.096	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	83.714	ENSCGRG00001023686	Ptcd1	99	83.714	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0028011	Ptcd1	99	82.955	ENSCGRG00000015031	Ptcd1	99	82.955	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0028011	Ptcd1	87	46.393	ENSCSEG00000002378	ptcd1	83	46.634	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0028011	Ptcd1	85	47.841	ENSCVAG00000003621	ptcd1	88	47.255	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0028011	Ptcd1	86	47.603	ENSCVAG00000015826	ptcd1	86	46.709	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0028011	Ptcd1	87	49.756	ENSDARG00000076176	ptcd1	88	49.756	Danio_rerio
MGP_CAROLIEiJ_G0028011	Ptcd1	99	73.654	ENSDNOG00000009957	-	99	73.513	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.108	ENSDORG00000000740	Ptcd1	100	75.252	Dipodomys_ordii
MGP_CAROLIEiJ_G0028011	Ptcd1	90	40.616	ENSEBUG00000014515	ptcd1	96	42.032	Eptatretus_burgeri
MGP_CAROLIEiJ_G0028011	Ptcd1	99	77.542	ENSEASG00005002480	-	99	77.542	Equus_asinus_asinus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	77.825	ENSECAG00000016617	-	99	77.825	Equus_caballus
MGP_CAROLIEiJ_G0028011	Ptcd1	85	48.065	ENSELUG00000016517	ptcd1	82	48.065	Esox_lucius
MGP_CAROLIEiJ_G0028011	Ptcd1	99	77.077	ENSFCAG00000015069	-	99	76.934	Felis_catus
MGP_CAROLIEiJ_G0028011	Ptcd1	87	58.983	ENSFALG00000013803	-	87	58.983	Ficedula_albicollis
MGP_CAROLIEiJ_G0028011	Ptcd1	99	76.074	ENSFDAG00000006393	-	99	76.074	Fukomys_damarensis
MGP_CAROLIEiJ_G0028011	Ptcd1	78	46.898	ENSFHEG00000012491	ptcd1	90	46.898	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0028011	Ptcd1	84	46.325	ENSGMOG00000007639	ptcd1	93	46.325	Gadus_morhua
MGP_CAROLIEiJ_G0028011	Ptcd1	87	56.872	ENSGALG00000004711	-	88	56.299	Gallus_gallus
MGP_CAROLIEiJ_G0028011	Ptcd1	84	47.643	ENSGAFG00000013175	ptcd1	82	47.306	Gambusia_affinis
MGP_CAROLIEiJ_G0028011	Ptcd1	84	49.408	ENSGACG00000016607	ptcd1	89	49.153	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0028011	Ptcd1	88	56.640	ENSGAGG00000021832	-	93	56.640	Gopherus_agassizii
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.170	ENSGGOG00000015123	-	99	74.170	Gorilla_gorilla
MGP_CAROLIEiJ_G0028011	Ptcd1	89	48.309	ENSHBUG00000018275	ptcd1	85	47.343	Haplochromis_burtoni
MGP_CAROLIEiJ_G0028011	Ptcd1	99	76.868	ENSHGLG00000017621	-	99	76.868	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0028011	Ptcd1	99	76.868	ENSHGLG00100007218	-	99	76.868	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0028011	Ptcd1	85	45.743	ENSHCOG00000010784	ptcd1	85	46.090	Hippocampus_comes
MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.710	ENSSTOG00000001682	-	99	75.568	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	78.211	ENSJJAG00000000319	Ptcd1	99	77.922	Jaculus_jaculus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	45.415	ENSKMAG00000008708	ptcd1	95	45.415	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0028011	Ptcd1	89	46.751	ENSLBEG00000008061	ptcd1	85	46.349	Labrus_bergylta
MGP_CAROLIEiJ_G0028011	Ptcd1	87	56.260	ENSLACG00000011172	ptcd1	85	56.260	Latimeria_chalumnae
MGP_CAROLIEiJ_G0028011	Ptcd1	85	54.443	ENSLOCG00000004833	ptcd1	93	54.333	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	70.680	ENSLAFG00000002588	-	99	70.455	Loxodonta_africana
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.747	ENSMFAG00000041324	-	99	74.747	Macaca_fascicularis
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.603	ENSMMUG00000030408	-	99	74.603	Macaca_mulatta
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.603	ENSMNEG00000043786	-	99	74.603	Macaca_nemestrina
MGP_CAROLIEiJ_G0028011	Ptcd1	99	56.566	ENSMLEG00000031179	-	98	58.586	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0028011	Ptcd1	93	47.648	ENSMAMG00000007623	ptcd1	89	47.648	Mastacembelus_armatus
MGP_CAROLIEiJ_G0028011	Ptcd1	89	48.392	ENSMZEG00005012722	ptcd1	85	47.428	Maylandia_zebra
MGP_CAROLIEiJ_G0028011	Ptcd1	99	53.857	ENSMGAG00000004211	-	92	53.857	Meleagris_gallopavo
MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.287	ENSMICG00000017428	-	99	75.323	Microcebus_murinus
MGP_CAROLIEiJ_G0028011	Ptcd1	87	47.533	ENSMMOG00000020243	ptcd1	91	47.368	Mola_mola
MGP_CAROLIEiJ_G0028011	Ptcd1	99	57.844	ENSMODG00000001350	-	99	57.844	Monodelphis_domestica
MGP_CAROLIEiJ_G0028011	Ptcd1	89	48.248	ENSMALG00000018442	ptcd1	84	48.248	Monopterus_albus
MGP_CAROLIEiJ_G0028011	Ptcd1	100	97.122	ENSMUSG00000029624	Ptcd1	100	97.122	Mus_musculus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	94.813	MGP_PahariEiJ_G0024580	Ptcd1	99	94.813	Mus_pahari
MGP_CAROLIEiJ_G0028011	Ptcd1	100	97.842	MGP_SPRETEiJ_G0029012	Ptcd1	100	97.842	Mus_spretus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	77.383	ENSMPUG00000016518	-	99	77.525	Mustela_putorius_furo
MGP_CAROLIEiJ_G0028011	Ptcd1	99	76.814	ENSMLUG00000010994	-	93	78.031	Myotis_lucifugus
MGP_CAROLIEiJ_G0028011	Ptcd1	89	48.392	ENSNBRG00000010079	ptcd1	87	47.735	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.645	ENSNLEG00000011060	-	98	74.645	Nomascus_leucogenys
MGP_CAROLIEiJ_G0028011	Ptcd1	98	60.203	ENSMEUG00000006930	-	99	60.203	Notamacropus_eugenii
MGP_CAROLIEiJ_G0028011	Ptcd1	89	72.857	ENSOPRG00000013647	-	88	72.857	Ochotona_princeps
MGP_CAROLIEiJ_G0028011	Ptcd1	87	47.068	ENSONIG00000003168	ptcd1	99	46.254	Oreochromis_niloticus
MGP_CAROLIEiJ_G0028011	Ptcd1	81	56.326	ENSOANG00000007728	-	85	53.182	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	73.094	ENSOCUG00000010584	-	97	72.950	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0028011	Ptcd1	88	47.573	ENSORLG00000009275	ptcd1	87	47.573	Oryzias_latipes
MGP_CAROLIEiJ_G0028011	Ptcd1	88	47.249	ENSORLG00020000988	ptcd1	87	47.154	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0028011	Ptcd1	88	47.334	ENSORLG00015010557	ptcd1	87	47.334	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0028011	Ptcd1	90	46.479	ENSOMEG00000020627	ptcd1	91	46.562	Oryzias_melastigma
MGP_CAROLIEiJ_G0028011	Ptcd1	99	72.103	ENSOGAG00000010877	-	99	71.960	Otolemur_garnettii
MGP_CAROLIEiJ_G0028011	Ptcd1	99	71.408	ENSOARG00000018676	-	99	71.264	Ovis_aries
MGP_CAROLIEiJ_G0028011	Ptcd1	99	73.737	ENSPPAG00000036024	-	99	73.882	Pan_paniscus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	77.954	ENSPPRG00000003478	-	99	77.810	Panthera_pardus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	73.593	ENSPTRG00000019452	-	99	73.737	Pan_troglodytes
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.747	ENSPANG00000016730	-	99	74.747	Papio_anubis
MGP_CAROLIEiJ_G0028011	Ptcd1	85	53.500	ENSPKIG00000014215	ptcd1	86	53.769	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0028011	Ptcd1	85	58.333	ENSPSIG00000011184	-	100	58.333	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0028011	Ptcd1	74	42.004	ENSPMAG00000009667	ptcd1	100	42.004	Petromyzon_marinus
MGP_CAROLIEiJ_G0028011	Ptcd1	86	65.696	ENSPCIG00000024778	-	89	63.014	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0028011	Ptcd1	91	45.652	ENSPFOG00000004458	ptcd1	87	45.652	Poecilia_formosa
MGP_CAROLIEiJ_G0028011	Ptcd1	91	45.031	ENSPLAG00000011051	ptcd1	88	45.031	Poecilia_latipinna
MGP_CAROLIEiJ_G0028011	Ptcd1	91	45.963	ENSPMEG00000020547	ptcd1	87	45.963	Poecilia_mexicana
MGP_CAROLIEiJ_G0028011	Ptcd1	83	47.627	ENSPREG00000000059	ptcd1	83	47.069	Poecilia_reticulata
MGP_CAROLIEiJ_G0028011	Ptcd1	93	75.734	ENSPPYG00000017377	-	98	75.734	Pongo_abelii
MGP_CAROLIEiJ_G0028011	Ptcd1	80	72.275	ENSPCAG00000001852	-	87	72.275	Procavia_capensis
MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.571	ENSPCOG00000018596	-	99	75.606	Propithecus_coquereli
MGP_CAROLIEiJ_G0028011	Ptcd1	67	85.000	ENSPVAG00000007529	-	73	85.000	Pteropus_vampyrus
MGP_CAROLIEiJ_G0028011	Ptcd1	89	48.392	ENSPNYG00000019993	ptcd1	85	47.125	Pundamilia_nyererei
MGP_CAROLIEiJ_G0028011	Ptcd1	95	49.554	ENSPNAG00000014931	ptcd1	97	48.489	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0028011	Ptcd1	100	88.201	ENSRNOG00000000987	Ptcd1	100	88.201	Rattus_norvegicus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.674	ENSRBIG00000043393	-	99	74.674	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.819	ENSRROG00000036420	-	99	74.819	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.245	ENSSBOG00000024114	-	99	74.101	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0028011	Ptcd1	87	61.688	ENSSHAG00000011376	-	93	61.688	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0028011	Ptcd1	88	53.736	ENSSFOG00015007909	ptcd1	84	54.054	Scleropages_formosus
MGP_CAROLIEiJ_G0028011	Ptcd1	87	44.695	ENSSMAG00000000218	ptcd1	94	44.695	Scophthalmus_maximus
MGP_CAROLIEiJ_G0028011	Ptcd1	95	45.926	ENSSDUG00000015671	ptcd1	94	45.630	Seriola_dumerili
MGP_CAROLIEiJ_G0028011	Ptcd1	91	46.594	ENSSLDG00000014261	ptcd1	91	45.820	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0028011	Ptcd1	91	55.083	ENSSPUG00000003540	-	89	55.387	Sphenodon_punctatus
MGP_CAROLIEiJ_G0028011	Ptcd1	91	46.248	ENSSPAG00000011049	ptcd1	87	46.401	Stegastes_partitus
MGP_CAROLIEiJ_G0028011	Ptcd1	92	77.812	ENSSSCG00000007622	-	98	76.769	Sus_scrofa
MGP_CAROLIEiJ_G0028011	Ptcd1	88	58.728	ENSTGUG00000007563	-	99	59.054	Taeniopygia_guttata
MGP_CAROLIEiJ_G0028011	Ptcd1	88	46.191	ENSTRUG00000013471	ptcd1	83	46.191	Takifugu_rubripes
MGP_CAROLIEiJ_G0028011	Ptcd1	92	45.566	ENSTNIG00000008271	ptcd1	93	45.566	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.037	ENSTBEG00000011021	-	99	73.894	Tupaia_belangeri
MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.144	ENSTTRG00000003006	-	99	75.000	Tursiops_truncatus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	77.952	ENSUAMG00000008049	-	99	77.809	Ursus_americanus
MGP_CAROLIEiJ_G0028011	Ptcd1	99	77.201	ENSVVUG00000008836	-	99	77.056	Vulpes_vulpes
MGP_CAROLIEiJ_G0028011	Ptcd1	94	51.286	ENSXETG00000009891	ptcd1	96	50.221	Xenopus_tropicalis
MGP_CAROLIEiJ_G0028011	Ptcd1	91	45.950	ENSXMAG00000015540	ptcd1	87	46.106	Xiphophorus_maculatus