EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0028031 (Gene tree)
Gene ID: -
Gene Symbol: Gtf3a
Alias: 2010015D03Rik|2610111I01Rik|5330403M05Rik
Full Name: general transcription factor III A
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 6954 bases
Position: chr5:140524499-140531452
Accession: 1913846
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0072211	zf-C2H2	PF00096.26	2.3e-34	1	5
MGP_CAROLIEiJ_P0072211	zf-C2H2	PF00096.26	2.3e-34	2	5
MGP_CAROLIEiJ_P0072211	zf-C2H2	PF00096.26	2.3e-34	3	5
MGP_CAROLIEiJ_P0072211	zf-C2H2	PF00096.26	2.3e-34	4	5
MGP_CAROLIEiJ_P0072211	zf-C2H2	PF00096.26	2.3e-34	5	5
MGP_CAROLIEiJ_P0072209	zf-C2H2	PF00096.26	4.8e-34	1	5
MGP_CAROLIEiJ_P0072209	zf-C2H2	PF00096.26	4.8e-34	2	5
MGP_CAROLIEiJ_P0072209	zf-C2H2	PF00096.26	4.8e-34	3	5
MGP_CAROLIEiJ_P0072209	zf-C2H2	PF00096.26	4.8e-34	4	5
MGP_CAROLIEiJ_P0072209	zf-C2H2	PF00096.26	4.8e-34	5	5
MGP_CAROLIEiJ_P0072211	zf-met	PF12874.7	8.8e-05	1	1
MGP_CAROLIEiJ_P0072209	zf-met	PF12874.7	0.00019	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0072212	-	1693	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0072209	-	1298	-	MGP_CAROLIEiJ_P0072209	364 (aa)	-	-
MGP_CAROLIEiJ_T0072210	-	1967	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0072211	-	1426	-	MGP_CAROLIEiJ_P0072211	342 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0028031's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0028031's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0028031	Gtf3a	78	32.463	MGP_CAROLIEiJ_G0030502	-	61	32.463
MGP_CAROLIEiJ_G0028031	Gtf3a	78	32.463	MGP_CAROLIEiJ_G0030501	Zfp764	61	32.463
MGP_CAROLIEiJ_G0028031	Gtf3a	84	40.426	MGP_CAROLIEiJ_G0029329	Zfp94	69	40.426
MGP_CAROLIEiJ_G0028031	Gtf3a	78	37.647	MGP_CAROLIEiJ_G0029322	Zfp235	60	37.647
MGP_CAROLIEiJ_G0028031	Gtf3a	86	36.364	MGP_CAROLIEiJ_G0024034	Wt1	50	33.571

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0028031	Gtf3a	99	78.788	ENSAMEG00000015824	GTF3A	94	82.941	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0028031	Gtf3a	97	77.711	ENSBTAG00000012600	GTF3A	95	79.706	Bos_taurus
MGP_CAROLIEiJ_G0028031	Gtf3a	97	79.580	ENSCAFG00000006794	GTF3A	93	82.059	Canis_familiaris
MGP_CAROLIEiJ_G0028031	Gtf3a	97	77.410	ENSCHIG00000010341	-	95	79.412	Capra_hircus
MGP_CAROLIEiJ_G0028031	Gtf3a	97	78.012	ENSCHIG00000021040	-	80	80.000	Capra_hircus
MGP_CAROLIEiJ_G0028031	Gtf3a	92	76.786	ENSTSYG00000004206	GTF3A	93	81.731	Carlito_syrichta
MGP_CAROLIEiJ_G0028031	Gtf3a	81	77.627	ENSCAPG00000015862	GTF3A	97	82.869	Cavia_aperea
MGP_CAROLIEiJ_G0028031	Gtf3a	94	81.115	ENSCPOG00000010143	GTF3A	98	82.043	Cavia_porcellus
MGP_CAROLIEiJ_G0028031	Gtf3a	95	78.899	ENSCLAG00000003912	GTF3A	96	82.803	Chinchilla_lanigera
MGP_CAROLIEiJ_G0028031	Gtf3a	99	77.534	ENSDNOG00000037405	-	81	81.050	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0028031	Gtf3a	97	75.622	ENSETEG00000003225	GTF3A	71	77.619	Echinops_telfairi
MGP_CAROLIEiJ_G0028031	Gtf3a	99	78.788	ENSEASG00005022495	-	76	81.525	Equus_asinus_asinus
MGP_CAROLIEiJ_G0028031	Gtf3a	97	70.181	ENSEASG00005013216	-	86	72.222	Equus_asinus_asinus
MGP_CAROLIEiJ_G0028031	Gtf3a	99	79.614	ENSECAG00000014803	GTF3A	86	78.859	Equus_caballus
MGP_CAROLIEiJ_G0028031	Gtf3a	91	76.061	ENSECAG00000024825	-	74	78.683	Equus_caballus
MGP_CAROLIEiJ_G0028031	Gtf3a	99	76.099	ENSEEUG00000004307	GTF3A	84	80.352	Erinaceus_europaeus
MGP_CAROLIEiJ_G0028031	Gtf3a	99	79.339	ENSFCAG00000006982	GTF3A	79	82.991	Felis_catus
MGP_CAROLIEiJ_G0028031	Gtf3a	94	80.923	ENSFDAG00000016841	GTF3A	100	81.231	Fukomys_damarensis
MGP_CAROLIEiJ_G0028031	Gtf3a	91	82.372	ENSHGLG00000004173	GTF3A	97	83.013	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0028031	Gtf3a	91	82.372	ENSHGLG00100011561	GTF3A	97	83.013	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0028031	Gtf3a	91	82.748	ENSSTOG00000013853	GTF3A	100	83.706	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0028031	Gtf3a	87	79.856	ENSJJAG00000011501	Gtf3a	88	86.076	Jaculus_jaculus
MGP_CAROLIEiJ_G0028031	Gtf3a	99	70.000	ENSLAFG00000027315	GTF3A	94	73.410	Loxodonta_africana
MGP_CAROLIEiJ_G0028031	Gtf3a	99	84.765	ENSMAUG00000016253	Gtf3a	91	87.798	Mesocricetus_auratus
MGP_CAROLIEiJ_G0028031	Gtf3a	99	76.648	ENSMICG00000014763	GTF3A	91	82.738	Microcebus_murinus
MGP_CAROLIEiJ_G0028031	Gtf3a	100	98.352	ENSMUSG00000016503	Gtf3a	100	98.352	Mus_musculus
MGP_CAROLIEiJ_G0028031	Gtf3a	100	96.712	MGP_PahariEiJ_G0024597	Gtf3a	100	96.712	Mus_pahari
MGP_CAROLIEiJ_G0028031	Gtf3a	100	98.077	MGP_SPRETEiJ_G0029029	Gtf3a	100	98.077	Mus_spretus
MGP_CAROLIEiJ_G0028031	Gtf3a	99	78.512	ENSMPUG00000005835	GTF3A	98	78.177	Mustela_putorius_furo
MGP_CAROLIEiJ_G0028031	Gtf3a	91	83.939	ENSMLUG00000002158	GTF3A	99	83.939	Myotis_lucifugus
MGP_CAROLIEiJ_G0028031	Gtf3a	99	78.356	ENSNLEG00000000331	GTF3A	93	82.405	Nomascus_leucogenys
MGP_CAROLIEiJ_G0028031	Gtf3a	90	55.215	ENSMEUG00000010089	GTF3A	92	56.230	Notamacropus_eugenii
MGP_CAROLIEiJ_G0028031	Gtf3a	92	74.328	ENSOPRG00000000854	-	83	74.328	Ochotona_princeps
MGP_CAROLIEiJ_G0028031	Gtf3a	97	79.042	ENSODEG00000006725	GTF3A	80	81.818	Octodon_degus
MGP_CAROLIEiJ_G0028031	Gtf3a	99	77.348	ENSOCUG00000011713	GTF3A	77	81.250	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0028031	Gtf3a	99	76.712	ENSOGAG00000014589	GTF3A	99	77.260	Otolemur_garnettii
MGP_CAROLIEiJ_G0028031	Gtf3a	97	72.892	ENSOARG00000012551	GTF3A	93	75.000	Ovis_aries
MGP_CAROLIEiJ_G0028031	Gtf3a	99	79.339	ENSPPRG00000002368	GTF3A	94	82.991	Panthera_pardus
MGP_CAROLIEiJ_G0028031	Gtf3a	90	78.188	ENSPTIG00000018958	GTF3A	81	77.778	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0028031	Gtf3a	90	51.341	ENSPSIG00000011722	GTF3A	84	56.769	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0028031	Gtf3a	98	78.056	ENSPPYG00000005235	GTF3A	93	82.090	Pongo_abelii
MGP_CAROLIEiJ_G0028031	Gtf3a	93	79.825	ENSPCOG00000016742	GTF3A	77	80.702	Propithecus_coquereli
MGP_CAROLIEiJ_G0028031	Gtf3a	99	75.414	ENSPVAG00000012837	GTF3A	81	79.706	Pteropus_vampyrus
MGP_CAROLIEiJ_G0028031	Gtf3a	99	72.055	ENSRROG00000043264	GTF3A	91	76.716	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0028031	Gtf3a	90	73.926	ENSSHAG00000016965	GTF3A	90	76.752	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0028031	Gtf3a	90	71.383	ENSSARG00000010692	GTF3A	86	72.026	Sorex_araneus
MGP_CAROLIEiJ_G0028031	Gtf3a	92	67.062	ENSSPUG00000005307	GTF3A	88	68.997	Sphenodon_punctatus
MGP_CAROLIEiJ_G0028031	Gtf3a	77	46.992	ENSTRUG00000005241	gtf3ab	86	46.075	Takifugu_rubripes
MGP_CAROLIEiJ_G0028031	Gtf3a	80	85.714	ENSTBEG00000012075	GTF3A	61	84.766	Tupaia_belangeri
MGP_CAROLIEiJ_G0028031	Gtf3a	99	72.299	ENSTTRG00000008538	GTF3A	82	75.588	Tursiops_truncatus
MGP_CAROLIEiJ_G0028031	Gtf3a	99	78.512	ENSUAMG00000019189	GTF3A	94	82.647	Ursus_americanus
MGP_CAROLIEiJ_G0028031	Gtf3a	88	83.056	ENSUMAG00000016941	GTF3A	100	83.056	Ursus_maritimus
MGP_CAROLIEiJ_G0028031	Gtf3a	78	86.498	ENSVPAG00000004995	GTF3A	92	85.091	Vicugna_pacos
MGP_CAROLIEiJ_G0028031	Gtf3a	99	77.198	ENSVVUG00000009197	GTF3A	99	77.135	Vulpes_vulpes