EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0028125 (Gene tree)
Gene ID: 110296848
Gene Symbol: -
Alias: -
Full Name: U6 snRNA-associated Sm-like protein LSm8
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 6957 bases
Position: chr6:14402356-14409312
Accession: 110312627
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0072745	LSM	PF01423.22	4.3e-19	1	1
MGP_CAROLIEiJ_P0072747	LSM	PF01423.22	2.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0072745	-	806	XM_021165635	MGP_CAROLIEiJ_P0072745	96 (aa)	XP_021021294	UPI00000041B7
MGP_CAROLIEiJ_T0072746	-	3223	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0072747	-	503	-	MGP_CAROLIEiJ_P0072747	100 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0028125's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0028125's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0028125	-	92	34.091	MGP_CAROLIEiJ_G0030930	Lsm1	65	34.091
MGP_CAROLIEiJ_G0028125	-	73	35.526	MGP_CAROLIEiJ_G0015607	Lsm7	72	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSG00000128534	LSM8	100	100.000	Homo_sapiens
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSAPOG00000008649	lsm8	100	92.708	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSAMEG00000001162	LSM8	100	100.000	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0028125	-	78	97.333	ENSACIG00000014694	lsm8	100	97.333	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSAOCG00000013926	lsm8	100	92.708	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSAPEG00000023502	lsm8	100	92.708	Amphiprion_percula
MGP_CAROLIEiJ_G0028125	-	78	97.333	ENSATEG00000023432	lsm8	100	97.333	Anabas_testudineus
MGP_CAROLIEiJ_G0028125	-	95	91.489	ENSAPLG00000005115	LSM8	95	91.489	Anas_platyrhynchos
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSANAG00000027771	LSM8	100	100.000	Aotus_nancymaae
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSACLG00000011253	lsm8	100	92.708	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0028125	-	100	94.792	ENSAMXG00000042902	lsm8	100	94.792	Astyanax_mexicanus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSBTAG00000012649	LSM8	100	100.000	Bos_taurus
MGP_CAROLIEiJ_G0028125	-	98	58.511	WBGene00003082	lsm-8	96	58.511	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSCJAG00000046406	LSM8	100	100.000	Callithrix_jacchus
MGP_CAROLIEiJ_G0028125	-	99	100.000	ENSCAFG00000016459	LSM8	96	100.000	Canis_familiaris
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSCAFG00020007643	-	100	100.000	Canis_lupus_dingo
MGP_CAROLIEiJ_G0028125	-	89	98.824	ENSCAFG00020012800	-	66	98.824	Canis_lupus_dingo
MGP_CAROLIEiJ_G0028125	-	89	100.000	ENSCHIG00000014201	LSM8	90	100.000	Capra_hircus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSTSYG00000032434	LSM8	100	100.000	Carlito_syrichta
MGP_CAROLIEiJ_G0028125	-	77	98.649	ENSCAPG00000008253	LSM8	100	98.649	Cavia_aperea
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSCPOG00000035673	LSM8	100	100.000	Cavia_porcellus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSCCAG00000021329	LSM8	100	100.000	Cebus_capucinus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSCATG00000045302	LSM8	100	100.000	Cercocebus_atys
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSCLAG00000003726	LSM8	100	100.000	Chinchilla_lanigera
MGP_CAROLIEiJ_G0028125	-	100	95.833	ENSCSAG00000019007	-	100	95.833	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSCSAG00000010802	-	100	100.000	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0028125	-	89	100.000	ENSCPBG00000008154	LSM8	87	100.000	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0028125	-	100	75.000	ENSCING00000024877	-	100	75.000	Ciona_intestinalis
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSCANG00000040728	LSM8	100	100.000	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSCGRG00001000450	Lsm8	100	100.000	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0028125	-	89	100.000	ENSCGRG00000005587	Lsm8	100	100.000	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0028125	-	100	81.250	ENSCSEG00000004164	lsm8	100	81.250	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0028125	-	100	91.667	ENSCVAG00000020547	lsm8	100	91.667	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0028125	-	100	91.667	ENSDARG00000091656	lsm8	100	91.667	Danio_rerio
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSDNOG00000034613	LSM8	100	100.000	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSDORG00000027868	Lsm8	100	100.000	Dipodomys_ordii
MGP_CAROLIEiJ_G0028125	-	98	69.149	FBgn0035271	CG2021	99	69.149	Drosophila_melanogaster
MGP_CAROLIEiJ_G0028125	-	100	98.958	ENSETEG00000011594	LSM8	100	98.958	Echinops_telfairi
MGP_CAROLIEiJ_G0028125	-	77	91.892	ENSEBUG00000012017	lsm8	100	91.892	Eptatretus_burgeri
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSEASG00005008932	LSM8	62	100.000	Equus_asinus_asinus
MGP_CAROLIEiJ_G0028125	-	89	100.000	ENSECAG00000024025	LSM8	95	83.333	Equus_caballus
MGP_CAROLIEiJ_G0028125	-	100	91.667	ENSELUG00000010138	lsm8	100	91.667	Esox_lucius
MGP_CAROLIEiJ_G0028125	-	85	74.390	ENSFCAG00000044794	-	83	74.390	Felis_catus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSFCAG00000036620	-	100	100.000	Felis_catus
MGP_CAROLIEiJ_G0028125	-	100	98.958	ENSFALG00000010023	LSM8	100	98.958	Ficedula_albicollis
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSFDAG00000019530	LSM8	100	100.000	Fukomys_damarensis
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSFHEG00000013729	lsm8	100	92.708	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0028125	-	100	98.958	ENSGALG00000009110	LSM8	100	98.958	Gallus_gallus
MGP_CAROLIEiJ_G0028125	-	100	91.667	ENSGAFG00000001135	lsm8	100	91.667	Gambusia_affinis
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSGAGG00000017366	LSM8	100	100.000	Gopherus_agassizii
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSGGOG00000041883	LSM8	100	100.000	Gorilla_gorilla
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSHBUG00000003646	lsm8	100	92.708	Haplochromis_burtoni
MGP_CAROLIEiJ_G0028125	-	71	100.000	ENSHGLG00000001988	-	99	100.000	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0028125	-	100	93.750	ENSHGLG00000019782	-	100	93.750	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0028125	-	99	96.842	ENSHGLG00100003934	-	95	96.842	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0028125	-	100	95.833	ENSHGLG00100012166	-	100	95.833	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0028125	-	100	91.667	ENSHCOG00000005037	lsm8	100	91.667	Hippocampus_comes
MGP_CAROLIEiJ_G0028125	-	100	94.792	ENSIPUG00000019811	NAA38	100	94.792	Ictalurus_punctatus
MGP_CAROLIEiJ_G0028125	-	92	87.500	ENSSTOG00000034801	-	81	87.500	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSSTOG00000009039	LSM8	100	100.000	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSJJAG00000009031	Lsm8	99	100.000	Jaculus_jaculus
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSKMAG00000018983	lsm8	100	92.708	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0028125	-	100	94.792	ENSLACG00000010231	LSM8	100	94.792	Latimeria_chalumnae
MGP_CAROLIEiJ_G0028125	-	100	93.750	ENSLOCG00000015580	lsm8	100	93.750	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0028125	-	100	98.969	ENSLAFG00000011242	LSM8	100	98.969	Loxodonta_africana
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSMFAG00000035798	LSM8	100	100.000	Macaca_fascicularis
MGP_CAROLIEiJ_G0028125	-	100	95.833	ENSMFAG00000013044	-	100	95.833	Macaca_fascicularis
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSMMUG00000046401	LSM8	100	97.297	Macaca_mulatta
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSMNEG00000036764	-	100	100.000	Macaca_nemestrina
MGP_CAROLIEiJ_G0028125	-	78	96.000	ENSMNEG00000011141	-	100	96.000	Macaca_nemestrina
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSMLEG00000035828	-	100	100.000	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0028125	-	100	84.375	ENSMLEG00000039324	-	100	84.375	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0028125	-	78	97.333	ENSMAMG00000018839	lsm8	100	97.333	Mastacembelus_armatus
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSMZEG00005019138	lsm8	100	92.708	Maylandia_zebra
MGP_CAROLIEiJ_G0028125	-	100	98.958	ENSMGAG00000008808	LSM8	100	98.958	Meleagris_gallopavo
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSMAUG00000015721	-	100	92.708	Mesocricetus_auratus
MGP_CAROLIEiJ_G0028125	-	100	80.208	ENSMAUG00000015356	-	100	80.208	Mesocricetus_auratus
MGP_CAROLIEiJ_G0028125	-	100	73.000	ENSMAUG00000020287	-	100	90.541	Mesocricetus_auratus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSMICG00000042730	LSM8	100	100.000	Microcebus_murinus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSMOCG00000001688	Lsm8	100	100.000	Microtus_ochrogaster
MGP_CAROLIEiJ_G0028125	-	78	97.333	ENSMMOG00000006046	lsm8	100	97.333	Mola_mola
MGP_CAROLIEiJ_G0028125	-	76	86.667	ENSMODG00000015729	LSM8	96	86.667	Monodelphis_domestica
MGP_CAROLIEiJ_G0028125	-	100	93.750	ENSMALG00000000405	lsm8	100	93.750	Monopterus_albus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSMUSG00000044155	Lsm8	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0028125	-	100	100.000	MGP_PahariEiJ_G0021881	Lsm8	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0028125	-	100	100.000	MGP_SPRETEiJ_G0029125	-	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSMLUG00000006837	-	100	100.000	Myotis_lucifugus
MGP_CAROLIEiJ_G0028125	-	100	98.958	ENSMLUG00000027762	-	100	98.958	Myotis_lucifugus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSNGAG00000016554	Lsm8	100	100.000	Nannospalax_galili
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSNBRG00000014441	lsm8	100	92.708	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSNLEG00000011768	LSM8	100	100.000	Nomascus_leucogenys
MGP_CAROLIEiJ_G0028125	-	100	88.542	ENSMEUG00000007801	LSM8	100	88.542	Notamacropus_eugenii
MGP_CAROLIEiJ_G0028125	-	89	100.000	ENSOPRG00000014809	LSM8	100	100.000	Ochotona_princeps
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSODEG00000000418	-	100	100.000	Octodon_degus
MGP_CAROLIEiJ_G0028125	-	90	82.558	ENSODEG00000020290	-	100	82.558	Octodon_degus
MGP_CAROLIEiJ_G0028125	-	100	98.958	ENSOANG00000014536	LSM8	100	98.958	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0028125	-	100	98.969	ENSOCUG00000017359	LSM8	100	98.969	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0028125	-	100	82.292	ENSORLG00000017432	lsm8	100	82.292	Oryzias_latipes
MGP_CAROLIEiJ_G0028125	-	100	82.292	ENSORLG00020004376	lsm8	100	82.292	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSORLG00015003757	lsm8	100	92.708	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0028125	-	100	80.208	ENSOMEG00000022509	lsm8	100	81.250	Oryzias_melastigma
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSOGAG00000013377	LSM8	100	100.000	Otolemur_garnettii
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSOARG00000017974	LSM8	100	100.000	Ovis_aries
MGP_CAROLIEiJ_G0028125	-	78	100.000	ENSPPAG00000043228	-	100	100.000	Pan_paniscus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSPPRG00000006444	LSM8	100	100.000	Panthera_pardus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSPTIG00000004722	LSM8	100	100.000	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0028125	-	78	100.000	ENSPTRG00000046596	-	100	100.000	Pan_troglodytes
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSPANG00000035470	-	100	100.000	Papio_anubis
MGP_CAROLIEiJ_G0028125	-	100	93.750	ENSPANG00000019395	-	100	93.750	Papio_anubis
MGP_CAROLIEiJ_G0028125	-	89	97.647	ENSPKIG00000006092	lsm8	86	97.647	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0028125	-	78	100.000	ENSPSIG00000017054	LSM8	100	100.000	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0028125	-	78	97.333	ENSPMGG00000016442	lsm8	100	97.333	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0028125	-	77	97.297	ENSPEMG00000009153	Lsm8	100	98.649	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0028125	-	97	100.000	ENSPCIG00000021467	LSM8	98	100.000	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0028125	-	100	91.667	ENSPFOG00000012340	lsm8	100	91.667	Poecilia_formosa
MGP_CAROLIEiJ_G0028125	-	89	94.118	ENSPLAG00000000516	lsm8	89	94.118	Poecilia_latipinna
MGP_CAROLIEiJ_G0028125	-	100	91.667	ENSPMEG00000022567	lsm8	100	91.667	Poecilia_mexicana
MGP_CAROLIEiJ_G0028125	-	90	75.000	ENSPREG00000005527	lsm8	90	75.000	Poecilia_reticulata
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSPPYG00000017942	LSM8	100	100.000	Pongo_abelii
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSPCOG00000003309	-	100	100.000	Propithecus_coquereli
MGP_CAROLIEiJ_G0028125	-	99	77.895	ENSPCOG00000017982	-	99	77.895	Propithecus_coquereli
MGP_CAROLIEiJ_G0028125	-	89	98.824	ENSPVAG00000000990	LSM8	100	98.824	Pteropus_vampyrus
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSPNYG00000011448	lsm8	100	92.708	Pundamilia_nyererei
MGP_CAROLIEiJ_G0028125	-	100	94.792	ENSPNAG00000010252	lsm8	100	94.792	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSRNOG00000058677	Lsm8	100	100.000	Rattus_norvegicus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSRBIG00000032851	LSM8	100	100.000	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSRROG00000039618	LSM8	100	100.000	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSSBOG00000023223	LSM8	100	100.000	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSSHAG00000018435	-	100	100.000	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0028125	-	100	91.667	ENSSFOG00015004412	lsm8	100	91.667	Scleropages_formosus
MGP_CAROLIEiJ_G0028125	-	78	97.333	ENSSMAG00000009458	lsm8	100	97.333	Scophthalmus_maximus
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSSDUG00000014702	lsm8	100	92.708	Seriola_dumerili
MGP_CAROLIEiJ_G0028125	-	78	97.333	ENSSLDG00000016870	lsm8	100	97.333	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0028125	-	75	100.000	ENSSARG00000009628	-	100	100.000	Sorex_araneus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSSPUG00000017419	LSM8	100	100.000	Sphenodon_punctatus
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSSPAG00000021422	lsm8	100	92.708	Stegastes_partitus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSSSCG00000021652	LSM8	100	100.000	Sus_scrofa
MGP_CAROLIEiJ_G0028125	-	100	97.917	ENSTGUG00000004730	-	100	97.917	Taeniopygia_guttata
MGP_CAROLIEiJ_G0028125	-	100	96.875	ENSTGUG00000016823	-	100	96.875	Taeniopygia_guttata
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSTRUG00000025192	lsm8	100	92.708	Takifugu_rubripes
MGP_CAROLIEiJ_G0028125	-	100	92.708	ENSTNIG00000002864	lsm8	100	92.708	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSTTRG00000001023	LSM8	100	100.000	Tursiops_truncatus
MGP_CAROLIEiJ_G0028125	-	92	96.591	ENSUAMG00000006943	-	92	96.591	Ursus_americanus
MGP_CAROLIEiJ_G0028125	-	92	96.591	ENSUMAG00000003073	LSM8	94	96.591	Ursus_maritimus
MGP_CAROLIEiJ_G0028125	-	100	100.000	ENSVPAG00000001530	LSM8	100	100.000	Vicugna_pacos
MGP_CAROLIEiJ_G0028125	-	99	78.788	ENSVVUG00000013248	-	82	97.333	Vulpes_vulpes
MGP_CAROLIEiJ_G0028125	-	93	96.629	ENSXETG00000021829	lsm8	92	96.629	Xenopus_tropicalis
MGP_CAROLIEiJ_G0028125	-	100	89.583	ENSXCOG00000012938	lsm8	100	89.583	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0028125	-	100	91.667	ENSXMAG00000025919	lsm8	100	91.667	Xiphophorus_maculatus