EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0028159 (Gene tree)
Gene ID: 110295854
Gene Symbol: Snd1
Alias: Tudor-SN|p100 co-activator
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 443845 bases
Position: chr6:23332731-23776575
Accession: 110295854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0072872	TUDOR	PF00567.24	9.6e-28	1	1
MGP_CAROLIEiJ_P0072872	SNase	PF00565.17	1.7e-68	1	5
MGP_CAROLIEiJ_P0072872	SNase	PF00565.17	1.7e-68	2	5
MGP_CAROLIEiJ_P0072872	SNase	PF00565.17	1.7e-68	3	5
MGP_CAROLIEiJ_P0072872	SNase	PF00565.17	1.7e-68	4	5
MGP_CAROLIEiJ_P0072872	SNase	PF00565.17	1.7e-68	5	5
MGP_CAROLIEiJ_P0072876	SNase	PF00565.17	1.1e-48	1	3
MGP_CAROLIEiJ_P0072876	SNase	PF00565.17	1.1e-48	2	3
MGP_CAROLIEiJ_P0072876	SNase	PF00565.17	1.1e-48	3	3
MGP_CAROLIEiJ_P0072874	SNase	PF00565.17	2.4e-48	1	3
MGP_CAROLIEiJ_P0072874	SNase	PF00565.17	2.4e-48	2	3
MGP_CAROLIEiJ_P0072874	SNase	PF00565.17	2.4e-48	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0072872	-	3472	XM_021164222	MGP_CAROLIEiJ_P0072872	910 (aa)	XP_021019881	UPI000A3183AA
MGP_CAROLIEiJ_T0072873	-	3711	-	MGP_CAROLIEiJ_P0072873	262 (aa)	-	-
MGP_CAROLIEiJ_T0072884	-	366	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0072876	-	1809	-	MGP_CAROLIEiJ_P0072876	602 (aa)	-	-
MGP_CAROLIEiJ_T0072877	-	420	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0072874	-	3846	-	MGP_CAROLIEiJ_P0072874	608 (aa)	-	-
MGP_CAROLIEiJ_T0072875	-	2436	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0072885	-	717	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0072879	-	110	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0072882	-	386	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0072881	-	337	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0072880	-	321	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0028159's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0028159's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0028159	Snd1	100	97.582	ENSG00000197157	SND1	100	97.582	Homo_sapiens
MGP_CAROLIEiJ_G0028159	Snd1	99	85.042	ENSAPOG00000017599	snd1	98	84.676	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0028159	Snd1	100	97.368	ENSAMEG00000004664	SND1	94	97.368	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0028159	Snd1	98	81.859	ENSACIG00000003551	snd1	98	81.859	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0028159	Snd1	99	85.042	ENSAOCG00000014166	snd1	98	84.452	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0028159	Snd1	99	85.042	ENSAPEG00000007067	snd1	98	84.452	Amphiprion_percula
MGP_CAROLIEiJ_G0028159	Snd1	99	85.210	ENSATEG00000018475	snd1	88	83.922	Anabas_testudineus
MGP_CAROLIEiJ_G0028159	Snd1	100	98.022	ENSANAG00000034463	SND1	100	98.022	Aotus_nancymaae
MGP_CAROLIEiJ_G0028159	Snd1	99	84.317	ENSACLG00000022897	snd1	98	84.152	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0028159	Snd1	99	85.427	ENSAMXG00000016318	snd1	98	84.521	Astyanax_mexicanus
MGP_CAROLIEiJ_G0028159	Snd1	100	97.802	ENSBTAG00000010692	SND1	100	97.802	Bos_taurus
MGP_CAROLIEiJ_G0028159	Snd1	98	51.777	WBGene00006626	tsn-1	98	46.865	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0028159	Snd1	100	97.582	ENSCJAG00000017668	SND1	100	97.582	Callithrix_jacchus
MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	ENSCAFG00000001700	SND1	100	97.692	Canis_familiaris
MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	ENSCAFG00020021639	SND1	100	97.692	Canis_lupus_dingo
MGP_CAROLIEiJ_G0028159	Snd1	100	97.912	ENSCHIG00000023390	SND1	100	97.912	Capra_hircus
MGP_CAROLIEiJ_G0028159	Snd1	95	98.060	ENSTSYG00000004979	SND1	97	98.060	Carlito_syrichta
MGP_CAROLIEiJ_G0028159	Snd1	99	84.778	ENSCAPG00000010677	SND1	98	84.821	Cavia_aperea
MGP_CAROLIEiJ_G0028159	Snd1	100	97.582	ENSCPOG00000006251	SND1	100	97.582	Cavia_porcellus
MGP_CAROLIEiJ_G0028159	Snd1	100	97.912	ENSCCAG00000036847	SND1	100	97.912	Cebus_capucinus
MGP_CAROLIEiJ_G0028159	Snd1	100	97.802	ENSCATG00000035214	SND1	100	97.802	Cercocebus_atys
MGP_CAROLIEiJ_G0028159	Snd1	100	97.582	ENSCLAG00000011796	SND1	100	97.582	Chinchilla_lanigera
MGP_CAROLIEiJ_G0028159	Snd1	100	97.802	ENSCSAG00000010182	SND1	100	97.802	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0028159	Snd1	78	90.196	ENSCHOG00000002218	SND1	86	90.196	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0028159	Snd1	99	92.411	ENSCPBG00000018094	SND1	98	91.928	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0028159	Snd1	96	62.116	ENSCING00000000524	-	98	57.190	Ciona_intestinalis
MGP_CAROLIEiJ_G0028159	Snd1	98	62.712	ENSCSAVG00000008807	-	98	58.093	Ciona_savignyi
MGP_CAROLIEiJ_G0028159	Snd1	100	97.802	ENSCANG00000035119	SND1	100	97.802	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0028159	Snd1	100	98.352	ENSCGRG00001022514	Snd1	100	98.352	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0028159	Snd1	97	98.529	ENSCGRG00000012277	Snd1	99	98.529	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0028159	Snd1	99	85.329	ENSCSEG00000008661	snd1	98	83.781	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0028159	Snd1	99	85.882	ENSCVAG00000010316	snd1	100	83.218	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0028159	Snd1	99	85.906	ENSDARG00000006766	snd1	97	87.184	Danio_rerio
MGP_CAROLIEiJ_G0028159	Snd1	97	95.152	ENSDNOG00000006795	SND1	100	95.152	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0028159	Snd1	100	98.462	ENSDORG00000000336	Snd1	100	98.462	Dipodomys_ordii
MGP_CAROLIEiJ_G0028159	Snd1	96	53.322	FBgn0035121	Tudor-SN	97	50.656	Drosophila_melanogaster
MGP_CAROLIEiJ_G0028159	Snd1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
MGP_CAROLIEiJ_G0028159	Snd1	86	67.914	ENSEBUG00000014201	-	84	78.142	Eptatretus_burgeri
MGP_CAROLIEiJ_G0028159	Snd1	99	98.145	ENSEASG00005008513	SND1	100	96.112	Equus_asinus_asinus
MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	ENSECAG00000011451	SND1	100	97.692	Equus_caballus
MGP_CAROLIEiJ_G0028159	Snd1	99	96.459	ENSEEUG00000014737	SND1	100	86.813	Erinaceus_europaeus
MGP_CAROLIEiJ_G0028159	Snd1	99	83.250	ENSELUG00000001805	snd1	95	83.055	Esox_lucius
MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	ENSFCAG00000008289	SND1	100	97.692	Felis_catus
MGP_CAROLIEiJ_G0028159	Snd1	100	97.912	ENSFDAG00000015881	SND1	100	97.912	Fukomys_damarensis
MGP_CAROLIEiJ_G0028159	Snd1	98	85.666	ENSFHEG00000004093	snd1	97	84.168	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0028159	Snd1	64	74.294	ENSGMOG00000018932	snd1	64	74.294	Gadus_morhua
MGP_CAROLIEiJ_G0028159	Snd1	53	95.580	ENSGALG00000052684	-	50	93.583	Gallus_gallus
MGP_CAROLIEiJ_G0028159	Snd1	99	85.714	ENSGAFG00000008421	snd1	99	84.667	Gambusia_affinis
MGP_CAROLIEiJ_G0028159	Snd1	100	53.855	ENSGACG00000019793	snd1	98	54.204	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0028159	Snd1	100	97.802	ENSGGOG00000009614	SND1	100	97.802	Gorilla_gorilla
MGP_CAROLIEiJ_G0028159	Snd1	99	84.941	ENSHBUG00000019135	snd1	99	84.152	Haplochromis_burtoni
MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	ENSHGLG00000003618	SND1	100	97.692	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0028159	Snd1	99	97.348	ENSHGLG00100012449	SND1	100	97.348	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0028159	Snd1	99	84.706	ENSHCOG00000005266	snd1	98	83.781	Hippocampus_comes
MGP_CAROLIEiJ_G0028159	Snd1	99	84.925	ENSIPUG00000013279	snd1	98	83.408	Ictalurus_punctatus
MGP_CAROLIEiJ_G0028159	Snd1	100	98.242	ENSSTOG00000002140	SND1	100	98.242	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0028159	Snd1	100	98.242	ENSJJAG00000009561	Snd1	100	98.242	Jaculus_jaculus
MGP_CAROLIEiJ_G0028159	Snd1	99	85.378	ENSKMAG00000016997	snd1	98	84.564	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0028159	Snd1	100	84.396	ENSLBEG00000013563	snd1	98	83.221	Labrus_bergylta
MGP_CAROLIEiJ_G0028159	Snd1	99	84.564	ENSLOCG00000015537	snd1	98	84.812	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0028159	Snd1	100	96.923	ENSLAFG00000009696	SND1	100	96.923	Loxodonta_africana
MGP_CAROLIEiJ_G0028159	Snd1	100	97.802	ENSMFAG00000038114	SND1	100	97.802	Macaca_fascicularis
MGP_CAROLIEiJ_G0028159	Snd1	100	97.802	ENSMMUG00000015432	SND1	100	97.802	Macaca_mulatta
MGP_CAROLIEiJ_G0028159	Snd1	100	97.802	ENSMNEG00000039808	SND1	100	97.853	Macaca_nemestrina
MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	ENSMLEG00000029040	SND1	100	97.740	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0028159	Snd1	98	86.102	ENSMAMG00000011739	snd1	98	84.263	Mastacembelus_armatus
MGP_CAROLIEiJ_G0028159	Snd1	99	84.317	ENSMZEG00005005681	snd1	98	84.152	Maylandia_zebra
MGP_CAROLIEiJ_G0028159	Snd1	100	97.912	ENSMICG00000000097	SND1	100	97.912	Microcebus_murinus
MGP_CAROLIEiJ_G0028159	Snd1	100	98.901	ENSMOCG00000005040	Snd1	100	98.901	Microtus_ochrogaster
MGP_CAROLIEiJ_G0028159	Snd1	99	85.042	ENSMMOG00000001795	snd1	98	84.340	Mola_mola
MGP_CAROLIEiJ_G0028159	Snd1	99	94.872	ENSMODG00000015182	SND1	98	94.860	Monodelphis_domestica
MGP_CAROLIEiJ_G0028159	Snd1	99	84.874	ENSMALG00000012071	snd1	98	83.817	Monopterus_albus
MGP_CAROLIEiJ_G0028159	Snd1	100	99.780	ENSMUSG00000001424	Snd1	100	99.780	Mus_musculus
MGP_CAROLIEiJ_G0028159	Snd1	100	99.780	MGP_PahariEiJ_G0021917	Snd1	100	99.780	Mus_pahari
MGP_CAROLIEiJ_G0028159	Snd1	100	100.000	MGP_SPRETEiJ_G0029159	Snd1	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0028159	Snd1	100	97.582	ENSMPUG00000006545	SND1	100	97.582	Mustela_putorius_furo
MGP_CAROLIEiJ_G0028159	Snd1	97	96.201	ENSMLUG00000017130	SND1	99	96.201	Myotis_lucifugus
MGP_CAROLIEiJ_G0028159	Snd1	100	98.571	ENSNGAG00000011186	Snd1	100	98.571	Nannospalax_galili
MGP_CAROLIEiJ_G0028159	Snd1	99	84.317	ENSNBRG00000006681	snd1	98	84.040	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	ENSNLEG00000012263	SND1	100	97.853	Nomascus_leucogenys
MGP_CAROLIEiJ_G0028159	Snd1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	ENSODEG00000011502	SND1	100	97.692	Octodon_degus
MGP_CAROLIEiJ_G0028159	Snd1	99	83.980	ENSONIG00000011481	snd1	96	83.929	Oreochromis_niloticus
MGP_CAROLIEiJ_G0028159	Snd1	98	93.919	ENSOANG00000000817	SND1	98	93.408	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0028159	Snd1	100	96.593	ENSOCUG00000001620	SND1	100	96.593	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0028159	Snd1	96	87.175	ENSORLG00000015201	snd1	98	83.687	Oryzias_latipes
MGP_CAROLIEiJ_G0028159	Snd1	96	87.175	ENSORLG00020013991	snd1	98	83.799	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0028159	Snd1	96	87.175	ENSORLG00015012436	snd1	98	83.799	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0028159	Snd1	99	84.706	ENSOMEG00000006406	snd1	98	84.116	Oryzias_melastigma
MGP_CAROLIEiJ_G0028159	Snd1	100	97.259	ENSOGAG00000013356	SND1	94	97.259	Otolemur_garnettii
MGP_CAROLIEiJ_G0028159	Snd1	96	97.731	ENSOARG00000002149	SND1	100	95.254	Ovis_aries
MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	ENSPPAG00000042947	SND1	100	97.692	Pan_paniscus
MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	ENSPPRG00000004494	SND1	100	97.692	Panthera_pardus
MGP_CAROLIEiJ_G0028159	Snd1	100	97.582	ENSPTIG00000014214	SND1	100	97.582	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	ENSPTRG00000023911	SND1	100	97.692	Pan_troglodytes
MGP_CAROLIEiJ_G0028159	Snd1	99	98.482	ENSPANG00000011997	SND1	99	97.851	Papio_anubis
MGP_CAROLIEiJ_G0028159	Snd1	97	84.068	ENSPKIG00000023494	snd1	98	81.354	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0028159	Snd1	92	85.145	ENSPMGG00000003629	snd1	100	82.515	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0028159	Snd1	100	99.011	ENSPEMG00000010240	Snd1	100	99.011	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0028159	Snd1	95	78.947	ENSPMAG00000007915	-	99	72.881	Petromyzon_marinus
MGP_CAROLIEiJ_G0028159	Snd1	99	95.095	ENSPCIG00000011561	SND1	98	95.084	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0028159	Snd1	99	85.378	ENSPFOG00000001557	snd1	98	84.228	Poecilia_formosa
MGP_CAROLIEiJ_G0028159	Snd1	99	85.546	ENSPLAG00000018459	snd1	95	84.228	Poecilia_latipinna
MGP_CAROLIEiJ_G0028159	Snd1	99	85.882	ENSPMEG00000006803	snd1	98	84.676	Poecilia_mexicana
MGP_CAROLIEiJ_G0028159	Snd1	99	85.882	ENSPREG00000002189	snd1	98	84.564	Poecilia_reticulata
MGP_CAROLIEiJ_G0028159	Snd1	99	98.314	ENSPPYG00000017972	SND1	100	97.519	Pongo_abelii
MGP_CAROLIEiJ_G0028159	Snd1	100	85.275	ENSPCAG00000011305	SND1	98	85.251	Procavia_capensis
MGP_CAROLIEiJ_G0028159	Snd1	100	97.582	ENSPCOG00000026791	SND1	100	97.627	Propithecus_coquereli
MGP_CAROLIEiJ_G0028159	Snd1	100	95.824	ENSPVAG00000013945	SND1	100	95.824	Pteropus_vampyrus
MGP_CAROLIEiJ_G0028159	Snd1	99	84.317	ENSPNYG00000000932	snd1	98	84.152	Pundamilia_nyererei
MGP_CAROLIEiJ_G0028159	Snd1	99	85.260	ENSPNAG00000001206	snd1	98	84.187	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0028159	Snd1	99	99.323	ENSRNOG00000031173	Snd1	99	99.009	Rattus_norvegicus
MGP_CAROLIEiJ_G0028159	Snd1	95	98.120	ENSRBIG00000027782	-	93	98.289	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0028159	Snd1	100	97.802	ENSRROG00000033020	SND1	100	97.802	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0028159	Snd1	100	97.802	ENSSBOG00000032461	SND1	100	97.802	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0028159	Snd1	98	91.779	ENSSHAG00000015359	SND1	100	91.779	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0028159	Snd1	99	83.555	ENSSFOG00015001103	snd1	98	82.908	Scleropages_formosus
MGP_CAROLIEiJ_G0028159	Snd1	96	86.135	ENSSMAG00000001932	snd1	93	83.669	Scophthalmus_maximus
MGP_CAROLIEiJ_G0028159	Snd1	99	85.042	ENSSDUG00000002699	snd1	92	84.452	Seriola_dumerili
MGP_CAROLIEiJ_G0028159	Snd1	100	76.096	ENSSLDG00000001950	snd1	98	77.069	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0028159	Snd1	95	91.005	ENSSARG00000004877	SND1	92	98.113	Sorex_araneus
MGP_CAROLIEiJ_G0028159	Snd1	94	86.609	ENSSPUG00000017586	SND1	96	86.609	Sphenodon_punctatus
MGP_CAROLIEiJ_G0028159	Snd1	99	84.512	ENSSPAG00000021398	snd1	97	85.962	Stegastes_partitus
MGP_CAROLIEiJ_G0028159	Snd1	100	97.363	ENSSSCG00000016590	SND1	100	97.363	Sus_scrofa
MGP_CAROLIEiJ_G0028159	Snd1	99	86.738	ENSTRUG00000014067	snd1	98	83.221	Takifugu_rubripes
MGP_CAROLIEiJ_G0028159	Snd1	99	85.378	ENSTNIG00000011019	snd1	97	85.304	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0028159	Snd1	93	92.099	ENSTBEG00000003999	SND1	100	92.099	Tupaia_belangeri
MGP_CAROLIEiJ_G0028159	Snd1	100	93.077	ENSTTRG00000006059	SND1	100	93.077	Tursiops_truncatus
MGP_CAROLIEiJ_G0028159	Snd1	91	87.597	ENSUAMG00000002820	-	86	88.378	Ursus_americanus
MGP_CAROLIEiJ_G0028159	Snd1	91	97.909	ENSUAMG00000005604	-	93	97.909	Ursus_americanus
MGP_CAROLIEiJ_G0028159	Snd1	100	97.582	ENSUMAG00000005960	SND1	100	97.582	Ursus_maritimus
MGP_CAROLIEiJ_G0028159	Snd1	94	86.772	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
MGP_CAROLIEiJ_G0028159	Snd1	100	97.473	ENSVVUG00000007226	SND1	100	97.473	Vulpes_vulpes
MGP_CAROLIEiJ_G0028159	Snd1	95	90.300	ENSXETG00000023043	snd1	100	83.867	Xenopus_tropicalis
MGP_CAROLIEiJ_G0028159	Snd1	92	86.957	ENSXCOG00000013629	snd1	99	80.998	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0028159	Snd1	99	85.714	ENSXMAG00000011469	snd1	98	84.787	Xiphophorus_maculatus