EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0028458 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 60017 bases
Position: chr6:59477487-59537503
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0074121	ResIII	PF04851.15	3.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0074126	-	516	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0074127	-	726	-	MGP_CAROLIEiJ_P0074127	45 (aa)	-	-
MGP_CAROLIEiJ_T0074124	-	2686	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0074125	-	4174	-	MGP_CAROLIEiJ_P0074125	123 (aa)	-	-
MGP_CAROLIEiJ_T0074122	-	472	-	MGP_CAROLIEiJ_P0074122	68 (aa)	-	UPI0006A69FCB
MGP_CAROLIEiJ_T0074119	-	600	-	MGP_CAROLIEiJ_P0074119	73 (aa)	-	-
MGP_CAROLIEiJ_T0074120	-	734	-	MGP_CAROLIEiJ_P0074120	73 (aa)	-	-
MGP_CAROLIEiJ_T0074121	-	5614	-	MGP_CAROLIEiJ_P0074121	1253 (aa)	-	-
MGP_CAROLIEiJ_T0074117	-	566	-	MGP_CAROLIEiJ_P0074117	122 (aa)	-	-
MGP_CAROLIEiJ_T0074118	-	469	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0074128	-	3078	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0074129	-	637	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0074130	-	2516	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0074123	-	739	-	MGP_CAROLIEiJ_P0074123	73 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0028458's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0028458's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0028458	-	77	93.861	ENSG00000163104	SMARCAD1	100	96.477	Homo_sapiens
MGP_CAROLIEiJ_G0028458	-	67	62.375	ENSAPOG00000011446	smarcad1a	83	62.375	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0028458	-	77	93.278	ENSAMEG00000005844	SMARCAD1	94	93.278	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0028458	-	55	68.401	ENSACIG00000018326	smarcad1a	100	68.401	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0028458	-	67	62.232	ENSAOCG00000019762	smarcad1a	86	62.232	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0028458	-	67	62.375	ENSAPEG00000003889	smarcad1a	83	62.375	Amphiprion_percula
MGP_CAROLIEiJ_G0028458	-	62	65.850	ENSATEG00000015608	smarcad1a	82	65.850	Anabas_testudineus
MGP_CAROLIEiJ_G0028458	-	72	75.000	ENSAPLG00000004630	SMARCAD1	88	75.118	Anas_platyrhynchos
MGP_CAROLIEiJ_G0028458	-	77	74.734	ENSACAG00000013554	SMARCAD1	95	74.970	Anolis_carolinensis
MGP_CAROLIEiJ_G0028458	-	77	93.286	ENSANAG00000020488	SMARCAD1	95	93.286	Aotus_nancymaae
MGP_CAROLIEiJ_G0028458	-	61	66.147	ENSACLG00000017063	smarcad1a	83	66.147	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0028458	-	57	61.517	ENSAMXG00000015470	smarcad1a	98	61.517	Astyanax_mexicanus
MGP_CAROLIEiJ_G0028458	-	63	58.477	ENSAMXG00000019130	smarcad1b	89	57.964	Astyanax_mexicanus
MGP_CAROLIEiJ_G0028458	-	77	92.697	ENSBTAG00000017061	SMARCAD1	94	92.697	Bos_taurus
MGP_CAROLIEiJ_G0028458	-	62	36.759	WBGene00010845	M03C11.8	74	39.309	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0028458	-	77	93.743	ENSCJAG00000006778	SMARCAD1	95	93.743	Callithrix_jacchus
MGP_CAROLIEiJ_G0028458	-	77	93.042	ENSCAFG00000010026	SMARCAD1	94	93.042	Canis_familiaris
MGP_CAROLIEiJ_G0028458	-	67	93.152	ENSCAFG00020003994	SMARCAD1	95	93.152	Canis_lupus_dingo
MGP_CAROLIEiJ_G0028458	-	77	93.042	ENSCHIG00000012905	SMARCAD1	94	93.042	Capra_hircus
MGP_CAROLIEiJ_G0028458	-	77	93.388	ENSTSYG00000002706	SMARCAD1	94	93.388	Carlito_syrichta
MGP_CAROLIEiJ_G0028458	-	69	80.292	ENSCAPG00000016744	SMARCAD1	94	81.418	Cavia_aperea
MGP_CAROLIEiJ_G0028458	-	77	93.388	ENSCPOG00000011398	SMARCAD1	95	93.388	Cavia_porcellus
MGP_CAROLIEiJ_G0028458	-	77	93.625	ENSCCAG00000022264	SMARCAD1	100	96.141	Cebus_capucinus
MGP_CAROLIEiJ_G0028458	-	77	93.861	ENSCATG00000035663	SMARCAD1	95	93.861	Cercocebus_atys
MGP_CAROLIEiJ_G0028458	-	67	93.810	ENSCSAG00000004186	SMARCAD1	100	93.810	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0028458	-	77	77.385	ENSCPBG00000013203	SMARCAD1	95	77.385	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0028458	-	52	49.399	ENSCING00000001688	-	99	49.399	Ciona_intestinalis
MGP_CAROLIEiJ_G0028458	-	77	93.743	ENSCANG00000003556	SMARCAD1	100	96.477	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0028458	-	77	95.390	ENSCGRG00001015056	Smarcad1	95	95.390	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0028458	-	77	95.390	ENSCGRG00000014087	Smarcad1	95	95.390	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0028458	-	67	50.000	ENSCSEG00000017903	smarcad1a	88	51.538	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0028458	-	67	54.121	ENSCSEG00000014419	-	93	50.530	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0028458	-	65	56.469	ENSDARG00000073721	smarcad1b	85	56.747	Danio_rerio
MGP_CAROLIEiJ_G0028458	-	67	53.515	ENSDARG00000014041	smarcad1a	89	54.045	Danio_rerio
MGP_CAROLIEiJ_G0028458	-	77	92.916	ENSDNOG00000000806	-	95	92.916	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0028458	-	77	92.208	ENSDORG00000012331	Smarcad1	95	92.208	Dipodomys_ordii
MGP_CAROLIEiJ_G0028458	-	51	45.692	FBgn0032157	Etl1	80	44.575	Drosophila_melanogaster
MGP_CAROLIEiJ_G0028458	-	50	45.866	ENSEBUG00000003969	smarcad1a	96	46.029	Eptatretus_burgeri
MGP_CAROLIEiJ_G0028458	-	77	93.396	ENSEASG00005012382	SMARCAD1	94	93.396	Equus_asinus_asinus
MGP_CAROLIEiJ_G0028458	-	77	93.396	ENSECAG00000011562	SMARCAD1	94	93.396	Equus_caballus
MGP_CAROLIEiJ_G0028458	-	64	56.569	ENSELUG00000019154	smarcad1b	83	56.569	Esox_lucius
MGP_CAROLIEiJ_G0028458	-	67	55.804	ENSELUG00000018535	smarcad1a	87	55.804	Esox_lucius
MGP_CAROLIEiJ_G0028458	-	77	93.625	ENSFCAG00000003958	SMARCAD1	100	96.477	Felis_catus
MGP_CAROLIEiJ_G0028458	-	76	73.113	ENSFALG00000006089	SMARCAD1	93	73.113	Ficedula_albicollis
MGP_CAROLIEiJ_G0028458	-	77	93.506	ENSFDAG00000017027	SMARCAD1	95	93.506	Fukomys_damarensis
MGP_CAROLIEiJ_G0028458	-	62	65.022	ENSFHEG00000012778	smarcad1a	73	64.118	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0028458	-	67	57.362	ENSGMOG00000018995	smarcad1a	96	58.000	Gadus_morhua
MGP_CAROLIEiJ_G0028458	-	63	71.840	ENSGALG00000037339	SMARCAD1	96	71.840	Gallus_gallus
MGP_CAROLIEiJ_G0028458	-	59	66.193	ENSGAFG00000013498	smarcad1a	88	51.765	Gambusia_affinis
MGP_CAROLIEiJ_G0028458	-	67	58.914	ENSGACG00000007327	smarcad1a	96	58.914	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0028458	-	77	77.150	ENSGAGG00000008582	SMARCAD1	95	77.150	Gopherus_agassizii
MGP_CAROLIEiJ_G0028458	-	77	93.979	ENSGGOG00000023001	SMARCAD1	95	93.979	Gorilla_gorilla
MGP_CAROLIEiJ_G0028458	-	61	65.991	ENSHBUG00000011042	smarcad1a	78	65.991	Haplochromis_burtoni
MGP_CAROLIEiJ_G0028458	-	77	93.743	ENSHGLG00000005070	SMARCAD1	95	93.743	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0028458	-	77	93.743	ENSHGLG00100006812	SMARCAD1	95	93.743	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0028458	-	67	63.919	ENSHCOG00000007848	smarcad1a	84	58.289	Hippocampus_comes
MGP_CAROLIEiJ_G0028458	-	60	64.945	ENSIPUG00000000242	smarcad1a	90	60.333	Ictalurus_punctatus
MGP_CAROLIEiJ_G0028458	-	66	57.126	ENSIPUG00000022817	smarcad1b	89	57.605	Ictalurus_punctatus
MGP_CAROLIEiJ_G0028458	-	77	93.160	ENSSTOG00000001227	SMARCAD1	95	93.160	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0028458	-	77	93.979	ENSJJAG00000022342	Smarcad1	95	93.979	Jaculus_jaculus
MGP_CAROLIEiJ_G0028458	-	61	63.897	ENSKMAG00000021351	smarcad1a	76	63.447	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0028458	-	63	65.672	ENSLBEG00000008088	smarcad1a	82	64.040	Labrus_bergylta
MGP_CAROLIEiJ_G0028458	-	67	59.107	ENSLOCG00000012909	smarcad1a	86	61.215	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0028458	-	77	90.791	ENSLAFG00000000040	SMARCAD1	95	90.791	Loxodonta_africana
MGP_CAROLIEiJ_G0028458	-	77	93.743	ENSMFAG00000042606	SMARCAD1	95	93.743	Macaca_fascicularis
MGP_CAROLIEiJ_G0028458	-	67	93.743	ENSMMUG00000022242	SMARCAD1	95	93.743	Macaca_mulatta
MGP_CAROLIEiJ_G0028458	-	77	93.625	ENSMNEG00000038117	SMARCAD1	100	96.309	Macaca_nemestrina
MGP_CAROLIEiJ_G0028458	-	77	93.861	ENSMLEG00000038333	SMARCAD1	100	96.477	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0028458	-	65	62.953	ENSMAMG00000000933	smarcad1a	87	54.723	Mastacembelus_armatus
MGP_CAROLIEiJ_G0028458	-	61	66.147	ENSMZEG00005005203	smarcad1a	83	66.147	Maylandia_zebra
MGP_CAROLIEiJ_G0028458	-	67	66.667	ENSMGAG00000005577	SMARCAD1	88	66.667	Meleagris_gallopavo
MGP_CAROLIEiJ_G0028458	-	77	95.035	ENSMAUG00000008417	Smarcad1	95	95.035	Mesocricetus_auratus
MGP_CAROLIEiJ_G0028458	-	77	93.051	ENSMICG00000009746	SMARCAD1	94	93.051	Microcebus_murinus
MGP_CAROLIEiJ_G0028458	-	77	95.390	ENSMOCG00000017142	Smarcad1	95	95.390	Microtus_ochrogaster
MGP_CAROLIEiJ_G0028458	-	63	58.052	ENSMMOG00000000275	smarcad1a	98	58.052	Mola_mola
MGP_CAROLIEiJ_G0028458	-	77	83.274	ENSMODG00000019268	SMARCAD1	95	83.274	Monodelphis_domestica
MGP_CAROLIEiJ_G0028458	-	77	99.526	ENSMUSG00000029920	Smarcad1	95	99.526	Mus_musculus
MGP_CAROLIEiJ_G0028458	-	77	99.051	MGP_PahariEiJ_G0022198	Smarcad1	95	99.051	Mus_pahari
MGP_CAROLIEiJ_G0028458	-	77	99.644	MGP_SPRETEiJ_G0029462	Smarcad1	95	99.644	Mus_spretus
MGP_CAROLIEiJ_G0028458	-	77	93.160	ENSMPUG00000002111	SMARCAD1	94	93.160	Mustela_putorius_furo
MGP_CAROLIEiJ_G0028458	-	77	90.224	ENSMLUG00000000425	SMARCAD1	95	90.224	Myotis_lucifugus
MGP_CAROLIEiJ_G0028458	-	77	94.215	ENSNGAG00000000810	Smarcad1	95	94.215	Nannospalax_galili
MGP_CAROLIEiJ_G0028458	-	50	66.346	ENSNBRG00000012749	smarcad1a	74	66.346	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0028458	-	77	93.979	ENSNLEG00000014225	SMARCAD1	100	96.477	Nomascus_leucogenys
MGP_CAROLIEiJ_G0028458	-	77	93.388	ENSODEG00000004334	SMARCAD1	95	93.388	Octodon_degus
MGP_CAROLIEiJ_G0028458	-	67	58.049	ENSONIG00000015059	smarcad1a	87	58.637	Oreochromis_niloticus
MGP_CAROLIEiJ_G0028458	-	65	82.367	ENSOANG00000013764	SMARCAD1	100	82.488	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0028458	-	77	93.388	ENSOCUG00000017283	SMARCAD1	95	93.388	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0028458	-	62	66.615	ENSORLG00000004869	smarcad1a	81	64.095	Oryzias_latipes
MGP_CAROLIEiJ_G0028458	-	64	65.211	ENSORLG00020020569	smarcad1a	82	63.947	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0028458	-	66	63.339	ENSORLG00015009045	smarcad1a	81	63.798	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0028458	-	64	64.812	ENSOMEG00000023032	smarcad1a	78	64.478	Oryzias_melastigma
MGP_CAROLIEiJ_G0028458	-	77	92.571	ENSOGAG00000011444	SMARCAD1	94	92.571	Otolemur_garnettii
MGP_CAROLIEiJ_G0028458	-	77	93.042	ENSOARG00000017851	SMARCAD1	94	93.042	Ovis_aries
MGP_CAROLIEiJ_G0028458	-	77	93.979	ENSPPAG00000035715	SMARCAD1	95	93.979	Pan_paniscus
MGP_CAROLIEiJ_G0028458	-	77	93.625	ENSPPRG00000024756	SMARCAD1	100	96.477	Panthera_pardus
MGP_CAROLIEiJ_G0028458	-	77	93.404	ENSPTIG00000017868	SMARCAD1	94	93.404	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0028458	-	77	93.979	ENSPTRG00000023126	SMARCAD1	100	96.477	Pan_troglodytes
MGP_CAROLIEiJ_G0028458	-	77	92.353	ENSPANG00000019757	SMARCAD1	95	92.353	Papio_anubis
MGP_CAROLIEiJ_G0028458	-	77	76.561	ENSPSIG00000010255	SMARCAD1	95	76.561	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0028458	-	51	64.230	ENSPMGG00000010735	smarcad1a	95	62.556	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0028458	-	72	90.625	ENSPEMG00000001854	Smarcad1	91	90.625	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0028458	-	67	52.364	ENSPMAG00000003516	smarcad1a	85	52.480	Petromyzon_marinus
MGP_CAROLIEiJ_G0028458	-	63	85.209	ENSPCIG00000008137	SMARCAD1	98	86.538	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0028458	-	62	66.147	ENSPFOG00000019116	smarcad1a	76	62.968	Poecilia_formosa
MGP_CAROLIEiJ_G0028458	-	62	65.991	ENSPLAG00000000108	smarcad1a	76	62.824	Poecilia_latipinna
MGP_CAROLIEiJ_G0028458	-	62	66.147	ENSPMEG00000009155	smarcad1a	76	62.968	Poecilia_mexicana
MGP_CAROLIEiJ_G0028458	-	68	62.143	ENSPREG00000018185	smarcad1a	87	61.636	Poecilia_reticulata
MGP_CAROLIEiJ_G0028458	-	77	93.286	ENSPPYG00000014935	SMARCAD1	95	93.286	Pongo_abelii
MGP_CAROLIEiJ_G0028458	-	58	93.115	ENSPCOG00000020478	SMARCAD1	87	93.115	Propithecus_coquereli
MGP_CAROLIEiJ_G0028458	-	77	91.402	ENSPVAG00000001760	SMARCAD1	94	91.402	Pteropus_vampyrus
MGP_CAROLIEiJ_G0028458	-	50	65.865	ENSPNYG00000010087	smarcad1a	85	60.000	Pundamilia_nyererei
MGP_CAROLIEiJ_G0028458	-	67	55.293	ENSPNAG00000001663	smarcad1a	89	55.293	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0028458	-	64	58.200	ENSPNAG00000010099	smarcad1b	86	58.374	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0028458	-	77	97.636	ENSRNOG00000006391	Smarcad1	95	97.636	Rattus_norvegicus
MGP_CAROLIEiJ_G0028458	-	77	93.861	ENSRBIG00000041989	SMARCAD1	95	93.861	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0028458	-	77	93.861	ENSRROG00000035309	SMARCAD1	95	93.861	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0028458	-	77	93.625	ENSSBOG00000032114	SMARCAD1	100	96.141	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0028458	-	77	84.670	ENSSHAG00000001279	SMARCAD1	95	84.670	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0028458	-	67	55.982	ENSSFOG00015016814	smarcad1b	87	55.982	Scleropages_formosus
MGP_CAROLIEiJ_G0028458	-	61	57.662	ENSSFOG00015020909	smarcad1a	100	57.662	Scleropages_formosus
MGP_CAROLIEiJ_G0028458	-	67	65.430	ENSSMAG00000001326	smarcad1a	80	65.430	Scophthalmus_maximus
MGP_CAROLIEiJ_G0028458	-	55	62.841	ENSSDUG00000022338	smarcad1a	82	62.841	Seriola_dumerili
MGP_CAROLIEiJ_G0028458	-	65	62.069	ENSSLDG00000024986	smarcad1a	83	62.069	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0028458	-	64	63.037	ENSSPAG00000001970	smarcad1a	87	59.973	Stegastes_partitus
MGP_CAROLIEiJ_G0028458	-	77	93.160	ENSSSCG00000009193	SMARCAD1	100	93.103	Sus_scrofa
MGP_CAROLIEiJ_G0028458	-	62	76.531	ENSTGUG00000003127	SMARCAD1	100	76.786	Taeniopygia_guttata
MGP_CAROLIEiJ_G0028458	-	67	57.547	ENSTNIG00000017585	smarcad1a	96	57.547	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0028458	-	68	96.627	ENSTBEG00000002789	SMARCAD1	83	96.627	Tupaia_belangeri
MGP_CAROLIEiJ_G0028458	-	75	93.042	ENSTTRG00000000226	SMARCAD1	94	93.042	Tursiops_truncatus
MGP_CAROLIEiJ_G0028458	-	77	93.278	ENSUAMG00000022262	SMARCAD1	94	93.278	Ursus_americanus
MGP_CAROLIEiJ_G0028458	-	77	93.506	ENSUMAG00000004549	SMARCAD1	94	93.506	Ursus_maritimus
MGP_CAROLIEiJ_G0028458	-	77	93.278	ENSVVUG00000007271	SMARCAD1	100	93.222	Vulpes_vulpes
MGP_CAROLIEiJ_G0028458	-	67	65.541	ENSXETG00000019214	smarcad1	98	65.541	Xenopus_tropicalis
MGP_CAROLIEiJ_G0028458	-	62	58.710	ENSXCOG00000005232	smarcad1a	90	56.061	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0028458	-	62	65.835	ENSXMAG00000015350	smarcad1a	71	65.835	Xiphophorus_maculatus