EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0028598 (Gene tree)
Gene ID: 110296125
Gene Symbol: Pcbp1
Alias: WBP17|[a]CP-1|hnRNP E1
Full Name: poly(rC) binding protein 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 1840 bases
Position: chr6:82603745-82605584
Accession: 110296125
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0074795	KH_1	PF00013.29	2.6e-51	1	3
MGP_CAROLIEiJ_P0074795	KH_1	PF00013.29	2.6e-51	2	3
MGP_CAROLIEiJ_P0074795	KH_1	PF00013.29	2.6e-51	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0074795	-	1840	XM_021164671	MGP_CAROLIEiJ_P0074795	356 (aa)	XP_021020330	UPI000000029F

Gene Model

Click here to download MGP_CAROLIEiJ_G0028598's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0028598's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0028598	Pcbp1	66	41.558	MGP_CAROLIEiJ_G0029262	-	54	41.558
MGP_CAROLIEiJ_G0028598	Pcbp1	66	41.558	MGP_CAROLIEiJ_G0029261	-	54	41.558
MGP_CAROLIEiJ_G0028598	Pcbp1	100	81.744	MGP_CAROLIEiJ_G0020353	Pcbp2	100	81.744
MGP_CAROLIEiJ_G0028598	Pcbp1	98	53.541	MGP_CAROLIEiJ_G0032623	Pcbp4	97	67.826
MGP_CAROLIEiJ_G0028598	Pcbp1	99	66.484	MGP_CAROLIEiJ_G0015475	Pcbp3	99	65.873
MGP_CAROLIEiJ_G0028598	Pcbp1	70	43.243	MGP_CAROLIEiJ_G0020601	Igf2bp2	69	33.696
MGP_CAROLIEiJ_G0028598	Pcbp1	70	40.541	MGP_CAROLIEiJ_G0017728	Nova1	57	40.541
MGP_CAROLIEiJ_G0028598	Pcbp1	60	31.169	MGP_CAROLIEiJ_G0023413	Fubp3	88	32.370

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSG00000169564	PCBP1	100	100.000	Homo_sapiens
MGP_CAROLIEiJ_G0028598	Pcbp1	100	97.191	ENSAMEG00000016094	PCBP1	100	97.191	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0028598	Pcbp1	79	95.053	ENSANAG00000031745	-	100	95.053	Aotus_nancymaae
MGP_CAROLIEiJ_G0028598	Pcbp1	100	88.202	ENSANAG00000026077	-	100	88.202	Aotus_nancymaae
MGP_CAROLIEiJ_G0028598	Pcbp1	79	95.053	ENSANAG00000019364	-	100	95.053	Aotus_nancymaae
MGP_CAROLIEiJ_G0028598	Pcbp1	100	85.674	ENSANAG00000033377	-	100	85.674	Aotus_nancymaae
MGP_CAROLIEiJ_G0028598	Pcbp1	100	89.045	ENSANAG00000023938	-	100	89.045	Aotus_nancymaae
MGP_CAROLIEiJ_G0028598	Pcbp1	97	96.243	ENSANAG00000026989	-	99	96.243	Aotus_nancymaae
MGP_CAROLIEiJ_G0028598	Pcbp1	79	91.873	ENSANAG00000022494	-	100	91.873	Aotus_nancymaae
MGP_CAROLIEiJ_G0028598	Pcbp1	89	87.658	ENSANAG00000027108	-	100	87.658	Aotus_nancymaae
MGP_CAROLIEiJ_G0028598	Pcbp1	91	100.000	ENSBTAG00000008985	PCBP1	99	100.000	Bos_taurus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	94.382	ENSCJAG00000038388	-	95	94.382	Callithrix_jacchus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	99.719	ENSCAFG00000003326	PCBP1	100	99.719	Canis_familiaris
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSCHIG00000007923	PCBP1	100	100.000	Capra_hircus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	99.438	ENSTSYG00000027848	PCBP1	100	99.438	Carlito_syrichta
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSCPOG00000013511	PCBP1	100	100.000	Cavia_porcellus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	91.292	ENSCCAG00000029186	-	98	91.292	Cebus_capucinus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSCCAG00000019842	-	100	100.000	Cebus_capucinus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSCATG00000015029	PCBP1	100	100.000	Cercocebus_atys
MGP_CAROLIEiJ_G0028598	Pcbp1	100	99.438	ENSCLAG00000017909	PCBP1	100	99.438	Chinchilla_lanigera
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSCSAG00000019441	PCBP1	100	100.000	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0028598	Pcbp1	72	84.706	ENSCANG00000033810	-	87	84.706	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	89.888	ENSCANG00000032470	-	94	89.888	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSCANG00000018039	-	100	100.000	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSCGRG00001015078	Pcbp1	100	100.000	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSCGRG00000018899	Pcbp1	100	100.000	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0028598	Pcbp1	80	99.298	ENSDNOG00000036372	PCBP1	99	99.298	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSDORG00000008216	Pcbp1	100	100.000	Dipodomys_ordii
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSFCAG00000022238	PCBP1	100	100.000	Felis_catus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	99.719	ENSFDAG00000019637	PCBP1	100	99.719	Fukomys_damarensis
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSGGOG00000028130	PCBP1	100	100.000	Gorilla_gorilla
MGP_CAROLIEiJ_G0028598	Pcbp1	100	99.719	ENSHGLG00000020345	Pcbp1	100	99.719	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0028598	Pcbp1	100	97.753	ENSHGLG00000020243	-	100	97.753	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0028598	Pcbp1	100	99.438	ENSHGLG00100019620	-	100	99.438	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0028598	Pcbp1	100	99.719	ENSHGLG00100019761	Pcbp1	100	99.719	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSSTOG00000026002	PCBP1	100	100.000	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSJJAG00000000737	Pcbp1	100	100.000	Jaculus_jaculus
MGP_CAROLIEiJ_G0028598	Pcbp1	95	88.427	ENSMFAG00000003400	PCBP1	100	88.427	Macaca_fascicularis
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSMMUG00000038295	PCBP1	100	100.000	Macaca_mulatta
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSMNEG00000002934	PCBP1	100	100.000	Macaca_nemestrina
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSMLEG00000027389	PCBP1	100	100.000	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	99.719	ENSMAUG00000009843	Pcbp1	100	99.719	Mesocricetus_auratus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSMICG00000038221	PCBP1	100	100.000	Microcebus_murinus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSMOCG00000008102	Pcbp1	100	100.000	Microtus_ochrogaster
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSMUSG00000051695	Pcbp1	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	MGP_PahariEiJ_G0022335	Pcbp1	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	MGP_SPRETEiJ_G0029609	Pcbp1	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	97.191	ENSMPUG00000007175	PCBP1	100	97.191	Mustela_putorius_furo
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSMLUG00000014173	PCBP1	100	100.000	Myotis_lucifugus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSNGAG00000014909	-	100	100.000	Nannospalax_galili
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSNGAG00000011957	-	100	100.000	Nannospalax_galili
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSNLEG00000018722	PCBP1	100	100.000	Nomascus_leucogenys
MGP_CAROLIEiJ_G0028598	Pcbp1	100	83.427	ENSODEG00000000263	PCBP1	100	83.427	Octodon_degus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSOCUG00000003634	PCBP1	100	100.000	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	97.191	ENSOGAG00000028946	PCBP1	100	97.191	Otolemur_garnettii
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSOARG00000019516	PCBP1	100	100.000	Ovis_aries
MGP_CAROLIEiJ_G0028598	Pcbp1	100	98.034	ENSPPAG00000036116	PCBP1	99	98.599	Pan_paniscus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSPPRG00000020533	PCBP1	100	100.000	Panthera_pardus
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSPTIG00000007318	PCBP1	100	100.000	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSPTRG00000012025	PCBP1	100	100.000	Pan_troglodytes
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSPANG00000011314	PCBP1	100	100.000	Papio_anubis
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSPPYG00000012328	PCBP1	100	100.000	Pongo_abelii
MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	ENSPCOG00000026934	PCBP1	100	100.000	Propithecus_coquereli
MGP_CAROLIEiJ_G0028598	Pcbp1	100	99.157	ENSRROG00000009684	-	95	99.157	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0028598	Pcbp1	93	98.795	ENSRROG00000012514	-	100	98.795	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0028598	Pcbp1	100	83.427	ENSSBOG00000035309	-	94	83.427	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0028598	Pcbp1	100	99.719	ENSSSCG00000027224	PCBP1	100	99.719	Sus_scrofa
MGP_CAROLIEiJ_G0028598	Pcbp1	51	100.000	ENSTBEG00000015706	-	51	100.000	Tupaia_belangeri
MGP_CAROLIEiJ_G0028598	Pcbp1	91	99.690	ENSVVUG00000028033	PCBP1	99	99.690	Vulpes_vulpes