EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0028689 (Gene tree)
Gene ID: 110296599
Gene Symbol: Shq1
Alias: 2810403P18Rik|Grim-1
Full Name: SHQ1%2C H/ACA ribonucleoprotein assembly factor
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 97144 bases
Position: chr6:96498557-96595700
Accession: 110296599
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0075213	SHQ1	PF04925.15	5e-69	1	1
MGP_CAROLIEiJ_P0075214	SHQ1	PF04925.15	5e-69	1	1
MGP_CAROLIEiJ_P0075215	SHQ1	PF04925.15	6.5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0075216	-	755	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0075215	-	1641	-	MGP_CAROLIEiJ_P0075215	458 (aa)	-	-
MGP_CAROLIEiJ_T0075214	-	1993	-	MGP_CAROLIEiJ_P0075214	569 (aa)	XP_021020963	UPI000A317A12
MGP_CAROLIEiJ_T0075213	-	6121	-	MGP_CAROLIEiJ_P0075213	569 (aa)	XP_021020963	UPI000A317A12

Gene Model

Click here to download MGP_CAROLIEiJ_G0028689's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0028689's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0028689	Shq1	98	83.197	ENSG00000144736	SHQ1	100	82.000	Homo_sapiens
MGP_CAROLIEiJ_G0028689	Shq1	76	60.412	ENSAPOG00000000397	shq1	70	60.412	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0028689	Shq1	100	85.656	ENSAMEG00000015140	SHQ1	91	85.656	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0028689	Shq1	76	60.690	ENSACIG00000021249	shq1	73	59.955	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0028689	Shq1	78	60.938	ENSAOCG00000023311	shq1	73	60.440	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0028689	Shq1	78	60.714	ENSAPEG00000021686	shq1	73	60.220	Amphiprion_percula
MGP_CAROLIEiJ_G0028689	Shq1	78	60.403	ENSATEG00000008475	shq1	74	59.121	Anabas_testudineus
MGP_CAROLIEiJ_G0028689	Shq1	86	68.033	ENSAPLG00000013926	SHQ1	100	63.922	Anas_platyrhynchos
MGP_CAROLIEiJ_G0028689	Shq1	99	64.000	ENSACAG00000014809	SHQ1	85	60.208	Anolis_carolinensis
MGP_CAROLIEiJ_G0028689	Shq1	98	81.148	ENSANAG00000029241	SHQ1	98	74.603	Aotus_nancymaae
MGP_CAROLIEiJ_G0028689	Shq1	96	58.198	ENSANAG00000030500	-	98	55.516	Aotus_nancymaae
MGP_CAROLIEiJ_G0028689	Shq1	78	57.978	ENSACLG00000023077	shq1	79	53.438	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0028689	Shq1	76	54.861	ENSAMXG00000043822	shq1	74	55.505	Astyanax_mexicanus
MGP_CAROLIEiJ_G0028689	Shq1	100	82.377	ENSBTAG00000005436	SHQ1	91	82.377	Bos_taurus
MGP_CAROLIEiJ_G0028689	Shq1	76	32.658	WBGene00021655	Y48A5A.1	97	32.731	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0028689	Shq1	98	81.557	ENSCJAG00000015131	SHQ1	98	73.814	Callithrix_jacchus
MGP_CAROLIEiJ_G0028689	Shq1	100	84.426	ENSCAFG00000006434	SHQ1	99	74.740	Canis_familiaris
MGP_CAROLIEiJ_G0028689	Shq1	100	84.426	ENSCAFG00020016743	SHQ1	99	74.740	Canis_lupus_dingo
MGP_CAROLIEiJ_G0028689	Shq1	100	82.377	ENSCHIG00000012271	SHQ1	82	82.377	Capra_hircus
MGP_CAROLIEiJ_G0028689	Shq1	99	73.038	ENSTSYG00000014439	SHQ1	99	70.526	Carlito_syrichta
MGP_CAROLIEiJ_G0028689	Shq1	90	64.491	ENSCAPG00000009343	SHQ1	96	88.312	Cavia_aperea
MGP_CAROLIEiJ_G0028689	Shq1	98	83.197	ENSCPOG00000011443	SHQ1	90	83.197	Cavia_porcellus
MGP_CAROLIEiJ_G0028689	Shq1	96	59.893	ENSCCAG00000036087	-	97	57.194	Cebus_capucinus
MGP_CAROLIEiJ_G0028689	Shq1	98	65.256	ENSCCAG00000027080	SHQ1	98	63.668	Cebus_capucinus
MGP_CAROLIEiJ_G0028689	Shq1	100	82.377	ENSCATG00000041238	SHQ1	100	72.213	Cercocebus_atys
MGP_CAROLIEiJ_G0028689	Shq1	98	83.607	ENSCLAG00000004206	SHQ1	90	83.607	Chinchilla_lanigera
MGP_CAROLIEiJ_G0028689	Shq1	78	76.774	ENSCSAG00000011514	SHQ1	100	68.219	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0028689	Shq1	61	69.855	ENSCHOG00000003273	-	100	69.855	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0028689	Shq1	97	70.293	ENSCPBG00000006441	SHQ1	93	61.579	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0028689	Shq1	62	59.091	ENSCING00000008013	-	95	41.230	Ciona_intestinalis
MGP_CAROLIEiJ_G0028689	Shq1	62	62.791	ENSCSAVG00000002332	-	98	40.455	Ciona_savignyi
MGP_CAROLIEiJ_G0028689	Shq1	99	82.377	ENSCANG00000039295	SHQ1	91	81.557	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0028689	Shq1	100	94.672	ENSCGRG00001012583	Shq1	100	94.672	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0028689	Shq1	100	94.672	ENSCGRG00000009849	Shq1	100	94.672	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0028689	Shq1	73	61.722	ENSCSEG00000007829	shq1	71	60.976	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0028689	Shq1	76	60.412	ENSCVAG00000020049	shq1	92	51.699	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0028689	Shq1	76	59.039	ENSDARG00000058522	shq1	73	59.268	Danio_rerio
MGP_CAROLIEiJ_G0028689	Shq1	100	84.426	ENSDNOG00000033937	SHQ1	100	73.310	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0028689	Shq1	91	84.653	ENSETEG00000005766	SHQ1	99	65.157	Echinops_telfairi
MGP_CAROLIEiJ_G0028689	Shq1	78	46.222	ENSEBUG00000005445	shq1	99	45.111	Eptatretus_burgeri
MGP_CAROLIEiJ_G0028689	Shq1	100	84.426	ENSEASG00005002237	SHQ1	100	75.779	Equus_asinus_asinus
MGP_CAROLIEiJ_G0028689	Shq1	93	84.836	ENSECAG00000015673	SHQ1	95	76.512	Equus_caballus
MGP_CAROLIEiJ_G0028689	Shq1	100	79.918	ENSEEUG00000010568	SHQ1	100	71.799	Erinaceus_europaeus
MGP_CAROLIEiJ_G0028689	Shq1	73	60.870	ENSELUG00000003476	shq1	81	58.247	Esox_lucius
MGP_CAROLIEiJ_G0028689	Shq1	100	85.246	ENSFCAG00000012781	SHQ1	91	85.246	Felis_catus
MGP_CAROLIEiJ_G0028689	Shq1	99	70.082	ENSFALG00000013428	SHQ1	94	60.312	Ficedula_albicollis
MGP_CAROLIEiJ_G0028689	Shq1	98	82.787	ENSFDAG00000005595	SHQ1	83	82.377	Fukomys_damarensis
MGP_CAROLIEiJ_G0028689	Shq1	76	60.364	ENSFHEG00000017552	shq1	93	51.761	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0028689	Shq1	57	73.171	ENSGMOG00000007350	shq1	100	58.690	Gadus_morhua
MGP_CAROLIEiJ_G0028689	Shq1	98	70.711	ENSGALG00000007798	SHQ1	93	59.965	Gallus_gallus
MGP_CAROLIEiJ_G0028689	Shq1	57	75.610	ENSGACG00000011797	shq1	100	59.446	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0028689	Shq1	98	82.787	ENSGGOG00000034818	SHQ1	89	81.557	Gorilla_gorilla
MGP_CAROLIEiJ_G0028689	Shq1	78	57.753	ENSHBUG00000010857	shq1	78	56.458	Haplochromis_burtoni
MGP_CAROLIEiJ_G0028689	Shq1	98	83.607	ENSHGLG00000003637	SHQ1	82	83.607	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0028689	Shq1	98	83.607	ENSHGLG00100011957	SHQ1	82	83.607	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0028689	Shq1	89	57.207	ENSHCOG00000010799	shq1	90	50.933	Hippocampus_comes
MGP_CAROLIEiJ_G0028689	Shq1	76	60.046	ENSIPUG00000001247	shq1	74	60.046	Ictalurus_punctatus
MGP_CAROLIEiJ_G0028689	Shq1	98	81.557	ENSSTOG00000010043	SHQ1	100	73.498	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0028689	Shq1	98	85.246	ENSJJAG00000017611	Shq1	98	85.246	Jaculus_jaculus
MGP_CAROLIEiJ_G0028689	Shq1	78	60.225	ENSKMAG00000004457	shq1	76	59.031	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0028689	Shq1	78	66.213	ENSLACG00000014243	SHQ1	87	55.385	Latimeria_chalumnae
MGP_CAROLIEiJ_G0028689	Shq1	78	63.677	ENSLOCG00000009970	shq1	97	56.050	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0028689	Shq1	98	54.594	ENSMFAG00000037396	-	98	52.281	Macaca_fascicularis
MGP_CAROLIEiJ_G0028689	Shq1	100	82.787	ENSMFAG00000039148	SHQ1	100	72.384	Macaca_fascicularis
MGP_CAROLIEiJ_G0028689	Shq1	98	54.240	ENSMMUG00000021761	-	98	51.930	Macaca_mulatta
MGP_CAROLIEiJ_G0028689	Shq1	90	81.633	ENSMMUG00000009571	SHQ1	96	70.280	Macaca_mulatta
MGP_CAROLIEiJ_G0028689	Shq1	100	82.787	ENSMNEG00000032667	SHQ1	100	72.384	Macaca_nemestrina
MGP_CAROLIEiJ_G0028689	Shq1	100	82.377	ENSMLEG00000038493	SHQ1	100	71.698	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0028689	Shq1	78	60.314	ENSMAMG00000023432	shq1	68	59.641	Mastacembelus_armatus
MGP_CAROLIEiJ_G0028689	Shq1	78	57.978	ENSMZEG00005008649	shq1	78	56.667	Maylandia_zebra
MGP_CAROLIEiJ_G0028689	Shq1	98	69.295	ENSMGAG00000009640	SHQ1	93	58.348	Meleagris_gallopavo
MGP_CAROLIEiJ_G0028689	Shq1	100	93.852	ENSMAUG00000022030	Shq1	100	93.852	Mesocricetus_auratus
MGP_CAROLIEiJ_G0028689	Shq1	98	84.082	ENSMICG00000009224	SHQ1	98	73.958	Microcebus_murinus
MGP_CAROLIEiJ_G0028689	Shq1	100	93.852	ENSMOCG00000017836	Shq1	100	93.852	Microtus_ochrogaster
MGP_CAROLIEiJ_G0028689	Shq1	78	58.559	ENSMMOG00000010569	shq1	76	56.608	Mola_mola
MGP_CAROLIEiJ_G0028689	Shq1	93	68.852	ENSMODG00000003926	SHQ1	78	72.769	Monodelphis_domestica
MGP_CAROLIEiJ_G0028689	Shq1	77	60.998	ENSMALG00000008870	shq1	74	60.132	Monopterus_albus
MGP_CAROLIEiJ_G0028689	Shq1	100	99.180	ENSMUSG00000035378	Shq1	100	99.180	Mus_musculus
MGP_CAROLIEiJ_G0028689	Shq1	100	95.902	MGP_PahariEiJ_G0022440	Shq1	100	95.902	Mus_pahari
MGP_CAROLIEiJ_G0028689	Shq1	100	97.951	MGP_SPRETEiJ_G0029717	Shq1	100	97.951	Mus_spretus
MGP_CAROLIEiJ_G0028689	Shq1	98	82.787	ENSMPUG00000017006	SHQ1	96	74.250	Mustela_putorius_furo
MGP_CAROLIEiJ_G0028689	Shq1	90	69.714	ENSMLUG00000013539	SHQ1	98	69.866	Myotis_lucifugus
MGP_CAROLIEiJ_G0028689	Shq1	98	74.645	ENSNGAG00000023317	Shq1	100	74.291	Nannospalax_galili
MGP_CAROLIEiJ_G0028689	Shq1	62	56.461	ENSNBRG00000024004	shq1	75	54.987	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0028689	Shq1	98	84.016	ENSNLEG00000002731	SHQ1	98	74.517	Nomascus_leucogenys
MGP_CAROLIEiJ_G0028689	Shq1	83	64.815	ENSMEUG00000009350	-	89	64.815	Notamacropus_eugenii
MGP_CAROLIEiJ_G0028689	Shq1	98	83.193	ENSODEG00000009192	SHQ1	99	81.124	Octodon_degus
MGP_CAROLIEiJ_G0028689	Shq1	78	57.753	ENSONIG00000020264	shq1	78	56.458	Oreochromis_niloticus
MGP_CAROLIEiJ_G0028689	Shq1	99	83.128	ENSOCUG00000016695	SHQ1	90	83.128	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0028689	Shq1	76	59.954	ENSORLG00000023538	shq1	81	57.743	Oryzias_latipes
MGP_CAROLIEiJ_G0028689	Shq1	76	60.417	ENSORLG00020003697	shq1	80	58.186	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0028689	Shq1	76	60.185	ENSORLG00015021040	shq1	81	57.965	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0028689	Shq1	76	61.111	ENSOMEG00000001225	shq1	81	58.811	Oryzias_melastigma
MGP_CAROLIEiJ_G0028689	Shq1	98	82.591	ENSOGAG00000003898	SHQ1	100	73.822	Otolemur_garnettii
MGP_CAROLIEiJ_G0028689	Shq1	99	81.301	ENSOARG00000009547	SHQ1	99	73.057	Ovis_aries
MGP_CAROLIEiJ_G0028689	Shq1	98	57.592	ENSPPAG00000043263	-	98	55.439	Pan_paniscus
MGP_CAROLIEiJ_G0028689	Shq1	98	83.607	ENSPPAG00000027714	SHQ1	98	72.600	Pan_paniscus
MGP_CAROLIEiJ_G0028689	Shq1	100	85.246	ENSPPRG00000004769	SHQ1	91	85.246	Panthera_pardus
MGP_CAROLIEiJ_G0028689	Shq1	100	78.632	ENSPTIG00000011478	SHQ1	100	71.724	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0028689	Shq1	98	83.607	ENSPTRG00000015106	SHQ1	98	72.600	Pan_troglodytes
MGP_CAROLIEiJ_G0028689	Shq1	98	56.894	ENSPTRG00000048303	-	98	54.737	Pan_troglodytes
MGP_CAROLIEiJ_G0028689	Shq1	100	81.557	ENSPANG00000002881	SHQ1	100	72.899	Papio_anubis
MGP_CAROLIEiJ_G0028689	Shq1	65	68.919	ENSPKIG00000021517	shq1	76	57.692	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0028689	Shq1	97	69.167	ENSPSIG00000005536	SHQ1	93	61.930	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0028689	Shq1	67	67.857	ENSPMGG00000008838	shq1	75	56.222	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0028689	Shq1	100	94.672	ENSPEMG00000000251	Shq1	100	94.672	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0028689	Shq1	76	56.787	ENSPMAG00000005372	shq1	98	57.014	Petromyzon_marinus
MGP_CAROLIEiJ_G0028689	Shq1	76	58.542	ENSPFOG00000003118	shq1	82	57.522	Poecilia_formosa
MGP_CAROLIEiJ_G0028689	Shq1	61	56.609	ENSPMEG00000011076	shq1	78	55.402	Poecilia_mexicana
MGP_CAROLIEiJ_G0028689	Shq1	68	57.772	ENSPREG00000000591	shq1	73	57.949	Poecilia_reticulata
MGP_CAROLIEiJ_G0028689	Shq1	98	82.377	ENSPPYG00000013717	SHQ1	98	72.251	Pongo_abelii
MGP_CAROLIEiJ_G0028689	Shq1	94	83.607	ENSPCAG00000009035	SHQ1	99	74.690	Procavia_capensis
MGP_CAROLIEiJ_G0028689	Shq1	98	82.591	ENSPCOG00000008415	SHQ1	99	73.875	Propithecus_coquereli
MGP_CAROLIEiJ_G0028689	Shq1	98	82.377	ENSPVAG00000017392	SHQ1	99	75.880	Pteropus_vampyrus
MGP_CAROLIEiJ_G0028689	Shq1	78	57.978	ENSPNYG00000003878	shq1	72	58.427	Pundamilia_nyererei
MGP_CAROLIEiJ_G0028689	Shq1	76	59.447	ENSPNAG00000026840	shq1	79	55.852	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0028689	Shq1	100	95.902	ENSRNOG00000005433	Shq1	91	95.902	Rattus_norvegicus
MGP_CAROLIEiJ_G0028689	Shq1	99	77.200	ENSRBIG00000026280	SHQ1	100	68.685	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0028689	Shq1	99	82.377	ENSRROG00000034126	SHQ1	100	71.750	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0028689	Shq1	98	66.432	ENSSBOG00000021038	SHQ1	98	65.905	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0028689	Shq1	93	72.083	ENSSHAG00000015077	SHQ1	96	63.119	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0028689	Shq1	77	62.557	ENSSFOG00015016241	shq1	78	62.557	Scleropages_formosus
MGP_CAROLIEiJ_G0028689	Shq1	78	61.745	ENSSMAG00000016151	shq1	72	61.521	Scophthalmus_maximus
MGP_CAROLIEiJ_G0028689	Shq1	78	59.121	ENSSDUG00000011986	shq1	73	59.912	Seriola_dumerili
MGP_CAROLIEiJ_G0028689	Shq1	78	59.202	ENSSLDG00000013908	shq1	73	59.645	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0028689	Shq1	98	68.350	ENSSARG00000007119	SHQ1	98	59.194	Sorex_araneus
MGP_CAROLIEiJ_G0028689	Shq1	75	67.974	ENSSPUG00000011526	-	87	59.529	Sphenodon_punctatus
MGP_CAROLIEiJ_G0028689	Shq1	98	81.148	ENSSSCG00000011518	SHQ1	99	72.396	Sus_scrofa
MGP_CAROLIEiJ_G0028689	Shq1	99	64.469	ENSTGUG00000009933	SHQ1	100	59.725	Taeniopygia_guttata
MGP_CAROLIEiJ_G0028689	Shq1	73	57.416	ENSTRUG00000009446	shq1	75	56.793	Takifugu_rubripes
MGP_CAROLIEiJ_G0028689	Shq1	59	71.053	ENSTNIG00000007354	shq1	98	55.679	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0028689	Shq1	72	89.362	ENSTBEG00000011295	SHQ1	78	89.362	Tupaia_belangeri
MGP_CAROLIEiJ_G0028689	Shq1	97	83.197	ENSTTRG00000005320	SHQ1	98	75.887	Tursiops_truncatus
MGP_CAROLIEiJ_G0028689	Shq1	98	80.800	ENSUMAG00000024031	SHQ1	92	80.800	Ursus_maritimus
MGP_CAROLIEiJ_G0028689	Shq1	92	62.664	ENSVPAG00000004880	SHQ1	100	63.039	Vicugna_pacos
MGP_CAROLIEiJ_G0028689	Shq1	100	84.426	ENSVVUG00000013906	SHQ1	99	74.740	Vulpes_vulpes
MGP_CAROLIEiJ_G0028689	Shq1	78	64.853	ENSXETG00000032215	shq1	72	64.414	Xenopus_tropicalis