EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0028725 (Gene tree)
Gene ID: 110296274
Gene Symbol: Rpusd3
Alias: -
Full Name: RNA pseudouridine synthase D3
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 3986 bases
Position: chr6:108494560-108498545
Accession: 110296274
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0075421	PseudoU_synth_2	PF00849.22	2.9e-18	1	1
MGP_CAROLIEiJ_P0075420	PseudoU_synth_2	PF00849.22	4.3e-18	1	1
MGP_CAROLIEiJ_P0075417	PseudoU_synth_2	PF00849.22	5.3e-18	1	1
MGP_CAROLIEiJ_P0075418	PseudoU_synth_2	PF00849.22	2e-14	1	1
MGP_CAROLIEiJ_P0075423	PseudoU_synth_2	PF00849.22	1.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0075422	-	782	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0075420	-	1045	-	MGP_CAROLIEiJ_P0075420	315 (aa)	-	-
MGP_CAROLIEiJ_T0075421	-	805	-	MGP_CAROLIEiJ_P0075421	268 (aa)	-	-
MGP_CAROLIEiJ_T0075417	-	1269	XM_021164887	MGP_CAROLIEiJ_P0075417	344 (aa)	XP_021020546	UPI000A3153BC
MGP_CAROLIEiJ_T0075423	-	549	-	MGP_CAROLIEiJ_P0075423	182 (aa)	-	-
MGP_CAROLIEiJ_T0075424	-	526	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0075425	-	365	-	MGP_CAROLIEiJ_P0075425	117 (aa)	-	-
MGP_CAROLIEiJ_T0075426	-	756	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0075419	-	321	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0075418	-	1224	-	MGP_CAROLIEiJ_P0075418	279 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0028725's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0028725's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0028725	Rpusd3	80	35.069	MGP_CAROLIEiJ_G0031954	Rpusd4	71	35.069

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.384	ENSG00000156990	RPUSD3	98	72.384	Homo_sapiens
MGP_CAROLIEiJ_G0028725	Rpusd3	100	71.221	ENSAMEG00000016227	RPUSD3	98	71.221	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0028725	Rpusd3	81	53.670	ENSACAG00000009836	RPUSD3	80	52.313	Anolis_carolinensis
MGP_CAROLIEiJ_G0028725	Rpusd3	92	51.880	ENSANAG00000007127	-	96	51.485	Aotus_nancymaae
MGP_CAROLIEiJ_G0028725	Rpusd3	69	75.269	ENSANAG00000019945	-	77	72.917	Aotus_nancymaae
MGP_CAROLIEiJ_G0028725	Rpusd3	70	71.809	ENSANAG00000038118	-	90	71.809	Aotus_nancymaae
MGP_CAROLIEiJ_G0028725	Rpusd3	100	71.802	ENSBTAG00000007968	RPUSD3	100	71.802	Bos_taurus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	70.930	ENSCAFG00000029733	RPUSD3	98	70.930	Canis_familiaris
MGP_CAROLIEiJ_G0028725	Rpusd3	100	70.930	ENSCAFG00020008582	RPUSD3	98	70.930	Canis_lupus_dingo
MGP_CAROLIEiJ_G0028725	Rpusd3	99	73.783	ENSCHIG00000026027	RPUSD3	100	71.221	Capra_hircus
MGP_CAROLIEiJ_G0028725	Rpusd3	97	68.732	ENSTSYG00000009994	RPUSD3	95	69.254	Carlito_syrichta
MGP_CAROLIEiJ_G0028725	Rpusd3	74	77.889	ENSCAPG00000017559	RPUSD3	99	75.285	Cavia_aperea
MGP_CAROLIEiJ_G0028725	Rpusd3	96	67.829	ENSCPOG00000037956	RPUSD3	87	65.559	Cavia_porcellus
MGP_CAROLIEiJ_G0028725	Rpusd3	98	72.700	ENSCCAG00000029530	RPUSD3	97	72.700	Cebus_capucinus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.674	ENSCATG00000036939	RPUSD3	98	72.674	Cercocebus_atys
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.965	ENSCSAG00000010506	RPUSD3	98	72.965	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0028725	Rpusd3	51	76.190	ENSCHOG00000010151	-	67	76.190	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0028725	Rpusd3	72	54.359	ENSCPBG00000008825	RPUSD3	95	52.529	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.384	ENSCANG00000040711	RPUSD3	98	72.384	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	83.721	ENSCGRG00001004923	Rpusd3	95	83.721	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0028725	Rpusd3	100	83.721	ENSCGRG00000018315	Rpusd3	100	83.721	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0028725	Rpusd3	97	71.772	ENSDNOG00000039160	RPUSD3	88	71.772	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0028725	Rpusd3	76	73.034	ENSDORG00000026827	Rpusd3	92	73.034	Dipodomys_ordii
MGP_CAROLIEiJ_G0028725	Rpusd3	97	67.761	ENSETEG00000006538	RPUSD3	95	67.761	Echinops_telfairi
MGP_CAROLIEiJ_G0028725	Rpusd3	75	38.614	ENSEBUG00000015605	RPUSD3	65	38.614	Eptatretus_burgeri
MGP_CAROLIEiJ_G0028725	Rpusd3	100	73.256	ENSEASG00005014160	RPUSD3	96	73.256	Equus_asinus_asinus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	74.128	ENSECAG00000019988	RPUSD3	96	74.128	Equus_caballus
MGP_CAROLIEiJ_G0028725	Rpusd3	95	54.655	ENSEEUG00000007353	RPUSD3	94	54.655	Erinaceus_europaeus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	71.221	ENSFCAG00000014199	RPUSD3	98	71.221	Felis_catus
MGP_CAROLIEiJ_G0028725	Rpusd3	80	49.097	ENSFALG00000012968	RPUSD3	100	49.097	Ficedula_albicollis
MGP_CAROLIEiJ_G0028725	Rpusd3	75	77.114	ENSFDAG00000008350	RPUSD3	85	72.563	Fukomys_damarensis
MGP_CAROLIEiJ_G0028725	Rpusd3	75	55.721	ENSGAGG00000007493	RPUSD3	82	53.612	Gopherus_agassizii
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.674	ENSGGOG00000013120	RPUSD3	98	72.674	Gorilla_gorilla
MGP_CAROLIEiJ_G0028725	Rpusd3	100	59.383	ENSHGLG00000011722	RPUSD3	100	59.383	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0028725	Rpusd3	100	59.383	ENSHGLG00100016038	RPUSD3	100	59.383	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0028725	Rpusd3	100	70.930	ENSSTOG00000002125	RPUSD3	98	70.930	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	73.881	ENSJJAG00000012679	Rpusd3	100	72.674	Jaculus_jaculus
MGP_CAROLIEiJ_G0028725	Rpusd3	97	70.270	ENSLAFG00000017501	RPUSD3	97	70.270	Loxodonta_africana
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.093	ENSMFAG00000032407	RPUSD3	98	72.093	Macaca_fascicularis
MGP_CAROLIEiJ_G0028725	Rpusd3	100	68.023	ENSMMUG00000010628	RPUSD3	97	75.321	Macaca_mulatta
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.384	ENSMNEG00000040308	RPUSD3	98	72.384	Macaca_nemestrina
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.384	ENSMLEG00000033940	RPUSD3	98	72.384	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	83.721	ENSMAUG00000015473	Rpusd3	100	83.721	Mesocricetus_auratus
MGP_CAROLIEiJ_G0028725	Rpusd3	99	71.386	ENSMICG00000002315	RPUSD3	99	71.386	Microcebus_murinus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	83.430	ENSMOCG00000022613	Rpusd3	100	83.430	Microtus_ochrogaster
MGP_CAROLIEiJ_G0028725	Rpusd3	90	57.851	ENSMODG00000005210	RPUSD3	79	57.475	Monodelphis_domestica
MGP_CAROLIEiJ_G0028725	Rpusd3	100	96.642	ENSMUSG00000051169	Rpusd3	100	96.221	Mus_musculus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	93.023	MGP_PahariEiJ_G0022476	Rpusd3	100	93.023	Mus_pahari
MGP_CAROLIEiJ_G0028725	Rpusd3	100	96.269	MGP_SPRETEiJ_G0029753	Rpusd3	100	96.269	Mus_spretus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	70.930	ENSMPUG00000017132	RPUSD3	98	70.930	Mustela_putorius_furo
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.384	ENSMLUG00000006135	RPUSD3	99	72.384	Myotis_lucifugus
MGP_CAROLIEiJ_G0028725	Rpusd3	99	76.023	ENSNGAG00000023704	Rpusd3	99	76.023	Nannospalax_galili
MGP_CAROLIEiJ_G0028725	Rpusd3	97	64.444	ENSNLEG00000004214	RPUSD3	96	72.195	Nomascus_leucogenys
MGP_CAROLIEiJ_G0028725	Rpusd3	74	64.824	ENSMEUG00000013098	-	100	62.452	Notamacropus_eugenii
MGP_CAROLIEiJ_G0028725	Rpusd3	96	57.704	ENSOPRG00000002300	RPUSD3	94	57.704	Ochotona_princeps
MGP_CAROLIEiJ_G0028725	Rpusd3	77	71.970	ENSODEG00000018137	RPUSD3	91	71.970	Octodon_degus
MGP_CAROLIEiJ_G0028725	Rpusd3	83	48.239	ENSOANG00000012081	-	99	48.239	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	60.114	ENSOCUG00000027885	RPUSD3	100	60.114	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0028725	Rpusd3	91	74.841	ENSOGAG00000012592	RPUSD3	100	74.841	Otolemur_garnettii
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.674	ENSOARG00000005928	RPUSD3	98	72.674	Ovis_aries
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.965	ENSPPAG00000038083	RPUSD3	98	72.965	Pan_paniscus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	71.512	ENSPPRG00000024433	RPUSD3	98	71.512	Panthera_pardus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.093	ENSPTIG00000006828	RPUSD3	100	72.093	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.674	ENSPTRG00000051760	RPUSD3	98	72.674	Pan_troglodytes
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.674	ENSPANG00000023885	RPUSD3	98	72.674	Papio_anubis
MGP_CAROLIEiJ_G0028725	Rpusd3	100	84.302	ENSPEMG00000017245	Rpusd3	100	84.302	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0028725	Rpusd3	89	61.925	ENSPCIG00000021901	RPUSD3	86	59.468	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.674	ENSPPYG00000013676	RPUSD3	98	72.674	Pongo_abelii
MGP_CAROLIEiJ_G0028725	Rpusd3	99	53.091	ENSPCAG00000013731	-	97	53.737	Procavia_capensis
MGP_CAROLIEiJ_G0028725	Rpusd3	96	75.831	ENSPCOG00000018314	RPUSD3	94	75.831	Propithecus_coquereli
MGP_CAROLIEiJ_G0028725	Rpusd3	100	71.802	ENSPVAG00000011107	RPUSD3	98	71.802	Pteropus_vampyrus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	83.582	ENSRNOG00000009084	Rpusd3	100	82.558	Rattus_norvegicus
MGP_CAROLIEiJ_G0028725	Rpusd3	99	73.314	ENSRBIG00000041230	RPUSD3	97	73.314	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0028725	Rpusd3	99	73.314	ENSRROG00000043328	RPUSD3	97	73.314	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0028725	Rpusd3	98	71.810	ENSSBOG00000036106	RPUSD3	97	71.810	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0028725	Rpusd3	89	58.824	ENSSHAG00000015536	RPUSD3	97	56.146	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0028725	Rpusd3	100	70.349	ENSSSCG00000011555	RPUSD3	98	70.349	Sus_scrofa
MGP_CAROLIEiJ_G0028725	Rpusd3	73	50.256	ENSTGUG00000008744	RPUSD3	95	50.000	Taeniopygia_guttata
MGP_CAROLIEiJ_G0028725	Rpusd3	99	72.527	ENSTBEG00000000176	RPUSD3	97	72.954	Tupaia_belangeri
MGP_CAROLIEiJ_G0028725	Rpusd3	100	71.802	ENSTTRG00000007544	RPUSD3	98	71.802	Tursiops_truncatus
MGP_CAROLIEiJ_G0028725	Rpusd3	89	77.406	ENSUAMG00000011354	RPUSD3	94	76.238	Ursus_americanus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.093	ENSUMAG00000018830	RPUSD3	98	72.093	Ursus_maritimus
MGP_CAROLIEiJ_G0028725	Rpusd3	100	72.384	ENSVVUG00000023735	RPUSD3	100	72.384	Vulpes_vulpes
MGP_CAROLIEiJ_G0028725	Rpusd3	80	47.442	ENSXETG00000023546	rpusd3	98	47.122	Xenopus_tropicalis