EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0028760 (Gene tree)
Gene ID: 110296157
Gene Symbol: Mbd4
Alias: Med1
Full Name: methyl-CpG binding domain 4%2C DNA glycosylase
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 13422 bases
Position: chr6:110939531-110952952
Accession: 110296157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0075603	MBD	PF01429.19	9.8e-20	1	1
MGP_CAROLIEiJ_P0075599	MBD	PF01429.19	1.5e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0075599	-	3650	XM_021164723	MGP_CAROLIEiJ_P0075599	564 (aa)	XP_021020382	UPI000A317A45
MGP_CAROLIEiJ_T0075600	-	2057	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0075601	-	2946	-	MGP_CAROLIEiJ_P0075601	371 (aa)	-	-
MGP_CAROLIEiJ_T0075602	-	671	-	MGP_CAROLIEiJ_P0075602	175 (aa)	-	-
MGP_CAROLIEiJ_T0075603	-	2451	-	MGP_CAROLIEiJ_P0075603	396 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0028760's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0028760's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.609	ENSG00000129071	MBD4	98	95.000	Homo_sapiens
MGP_CAROLIEiJ_G0028760	Mbd4	86	42.540	ENSAPOG00000021668	mbd4	95	42.540	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.261	ENSAMEG00000004562	MBD4	99	66.261	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0028760	Mbd4	86	42.857	ENSAOCG00000001157	mbd4	95	43.056	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0028760	Mbd4	86	42.800	ENSAPEG00000016131	mbd4	95	43.000	Amphiprion_percula
MGP_CAROLIEiJ_G0028760	Mbd4	50	65.652	ENSATEG00000014594	MBD4	53	65.652	Anabas_testudineus
MGP_CAROLIEiJ_G0028760	Mbd4	100	62.063	ENSBTAG00000021645	MBD4	100	62.063	Bos_taurus
MGP_CAROLIEiJ_G0028760	Mbd4	100	65.913	ENSCJAG00000017293	MBD4	99	65.913	Callithrix_jacchus
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.378	ENSCAFG00000004867	MBD4	99	66.378	Canis_familiaris
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.378	ENSCAFG00020007082	MBD4	99	66.378	Canis_lupus_dingo
MGP_CAROLIEiJ_G0028760	Mbd4	100	62.587	ENSCHIG00000009760	MBD4	100	62.587	Capra_hircus
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.261	ENSCCAG00000029796	MBD4	99	66.261	Cebus_capucinus
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.434	ENSCATG00000035211	MBD4	99	66.434	Cercocebus_atys
MGP_CAROLIEiJ_G0028760	Mbd4	99	64.956	ENSCLAG00000008974	MBD4	99	64.956	Chinchilla_lanigera
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.841	ENSCSAG00000009037	MBD4	99	66.841	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0028760	Mbd4	95	47.028	ENSCPBG00000014704	MBD4	99	47.028	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.958	ENSCANG00000007120	MBD4	99	66.958	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0028760	Mbd4	100	76.148	ENSCGRG00001003507	Mbd4	100	77.032	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0028760	Mbd4	100	76.148	ENSCGRG00000010974	Mbd4	100	77.032	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0028760	Mbd4	100	64.983	ENSDNOG00000049619	MBD4	100	64.983	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0028760	Mbd4	91	47.059	ENSDORG00000000902	-	98	56.632	Dipodomys_ordii
MGP_CAROLIEiJ_G0028760	Mbd4	100	68.007	ENSEASG00005014800	MBD4	100	68.007	Equus_asinus_asinus
MGP_CAROLIEiJ_G0028760	Mbd4	100	67.832	ENSECAG00000022106	MBD4	100	67.832	Equus_caballus
MGP_CAROLIEiJ_G0028760	Mbd4	89	61.914	ENSEEUG00000011459	MBD4	95	61.914	Erinaceus_europaeus
MGP_CAROLIEiJ_G0028760	Mbd4	100	65.913	ENSFCAG00000000083	MBD4	99	65.913	Felis_catus
MGP_CAROLIEiJ_G0028760	Mbd4	83	45.851	ENSFALG00000013663	MBD4	99	45.875	Ficedula_albicollis
MGP_CAROLIEiJ_G0028760	Mbd4	86	41.818	ENSGMOG00000013830	mbd4	100	41.818	Gadus_morhua
MGP_CAROLIEiJ_G0028760	Mbd4	61	43.038	ENSGACG00000001970	-	78	43.038	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0028760	Mbd4	93	48.750	ENSGAGG00000018644	MBD4	96	48.750	Gopherus_agassizii
MGP_CAROLIEiJ_G0028760	Mbd4	100	65.799	ENSGGOG00000010698	MBD4	99	65.799	Gorilla_gorilla
MGP_CAROLIEiJ_G0028760	Mbd4	100	64.974	ENSHGLG00000009034	MBD4	100	64.974	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0028760	Mbd4	100	64.974	ENSHGLG00100000135	MBD4	100	64.974	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0028760	Mbd4	100	63.700	ENSSTOG00000020663	MBD4	100	63.700	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0028760	Mbd4	99	64.879	ENSLAFG00000010609	MBD4	99	64.879	Loxodonta_africana
MGP_CAROLIEiJ_G0028760	Mbd4	99	66.375	ENSMFAG00000002266	MBD4	99	66.375	Macaca_fascicularis
MGP_CAROLIEiJ_G0028760	Mbd4	99	66.202	ENSMMUG00000012723	MBD4	99	66.202	Macaca_mulatta
MGP_CAROLIEiJ_G0028760	Mbd4	96	64.717	ENSMNEG00000029752	MBD4	99	64.717	Macaca_nemestrina
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.259	ENSMLEG00000024859	MBD4	99	66.259	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.609	ENSMICG00000008022	MBD4	99	66.609	Microcebus_murinus
MGP_CAROLIEiJ_G0028760	Mbd4	100	61.596	ENSMOCG00000002466	-	100	61.596	Microtus_ochrogaster
MGP_CAROLIEiJ_G0028760	Mbd4	87	56.634	ENSMODG00000006399	-	99	56.634	Monodelphis_domestica
MGP_CAROLIEiJ_G0028760	Mbd4	100	95.035	ENSMUSG00000030322	Mbd4	100	95.035	Mus_musculus
MGP_CAROLIEiJ_G0028760	Mbd4	100	91.182	MGP_PahariEiJ_G0022511	-	100	91.182	Mus_pahari
MGP_CAROLIEiJ_G0028760	Mbd4	100	94.149	MGP_SPRETEiJ_G0029788	Mbd4	100	94.149	Mus_spretus
MGP_CAROLIEiJ_G0028760	Mbd4	100	65.969	ENSMPUG00000017195	MBD4	99	65.969	Mustela_putorius_furo
MGP_CAROLIEiJ_G0028760	Mbd4	94	69.663	ENSMLUG00000014766	MBD4	98	69.663	Myotis_lucifugus
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.725	ENSNLEG00000005337	MBD4	99	66.725	Nomascus_leucogenys
MGP_CAROLIEiJ_G0028760	Mbd4	100	59.478	ENSOPRG00000000473	MBD4	99	59.478	Ochotona_princeps
MGP_CAROLIEiJ_G0028760	Mbd4	86	43.281	ENSONIG00000017212	mbd4	100	43.281	Oreochromis_niloticus
MGP_CAROLIEiJ_G0028760	Mbd4	83	38.838	ENSOANG00000004589	-	89	45.636	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0028760	Mbd4	100	58.925	ENSOCUG00000013006	MBD4	99	58.925	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0028760	Mbd4	50	66.968	ENSORLG00000011049	mbd4	99	43.651	Oryzias_latipes
MGP_CAROLIEiJ_G0028760	Mbd4	87	43.110	ENSORLG00020020013	mbd4	99	44.334	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0028760	Mbd4	55	60.870	ENSORLG00015015342	mbd4	98	44.758	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0028760	Mbd4	100	63.222	ENSOGAG00000010236	MBD4	100	63.222	Otolemur_garnettii
MGP_CAROLIEiJ_G0028760	Mbd4	100	62.937	ENSOARG00000014699	MBD4	100	62.937	Ovis_aries
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.202	ENSPPAG00000036528	MBD4	99	66.202	Pan_paniscus
MGP_CAROLIEiJ_G0028760	Mbd4	100	65.331	ENSPPRG00000016480	MBD4	99	65.331	Panthera_pardus
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.435	ENSPTRG00000015377	MBD4	99	66.435	Pan_troglodytes
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.841	ENSPANG00000015047	MBD4	99	66.841	Papio_anubis
MGP_CAROLIEiJ_G0028760	Mbd4	95	48.103	ENSPSIG00000007892	MBD4	96	48.103	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0028760	Mbd4	94	70.654	ENSPEMG00000006226	Mbd4	99	71.082	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0028760	Mbd4	90	53.612	ENSPCIG00000002276	-	98	53.612	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0028760	Mbd4	86	43.992	ENSPFOG00000014471	mbd4	98	43.564	Poecilia_formosa
MGP_CAROLIEiJ_G0028760	Mbd4	100	65.969	ENSPPYG00000013417	MBD4	99	65.969	Pongo_abelii
MGP_CAROLIEiJ_G0028760	Mbd4	96	61.455	ENSPCAG00000012915	MBD4	99	61.455	Procavia_capensis
MGP_CAROLIEiJ_G0028760	Mbd4	100	68.641	ENSPVAG00000005238	MBD4	99	68.641	Pteropus_vampyrus
MGP_CAROLIEiJ_G0028760	Mbd4	100	82.777	ENSRNOG00000010919	Mbd4	100	82.777	Rattus_norvegicus
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.608	ENSRBIG00000027722	MBD4	99	66.608	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.434	ENSRROG00000029136	MBD4	99	66.434	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.087	ENSSBOG00000016810	MBD4	99	66.087	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0028760	Mbd4	94	53.480	ENSSHAG00000012953	MBD4	94	53.480	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0028760	Mbd4	86	43.636	ENSSFOG00015016292	mbd4	95	43.636	Scleropages_formosus
MGP_CAROLIEiJ_G0028760	Mbd4	53	78.161	ENSSMAG00000013958	-	67	43.393	Scophthalmus_maximus
MGP_CAROLIEiJ_G0028760	Mbd4	54	64.344	ENSSDUG00000001365	mbd4	62	64.344	Seriola_dumerili
MGP_CAROLIEiJ_G0028760	Mbd4	82	56.745	ENSSARG00000004496	-	80	56.745	Sorex_araneus
MGP_CAROLIEiJ_G0028760	Mbd4	87	47.953	ENSSPUG00000017344	MBD4	91	47.953	Sphenodon_punctatus
MGP_CAROLIEiJ_G0028760	Mbd4	100	67.014	ENSSSCG00000033303	MBD4	100	67.014	Sus_scrofa
MGP_CAROLIEiJ_G0028760	Mbd4	86	43.522	ENSTRUG00000010124	mbd4	95	43.522	Takifugu_rubripes
MGP_CAROLIEiJ_G0028760	Mbd4	86	43.141	ENSTNIG00000017927	mbd4	100	43.141	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0028760	Mbd4	86	62.385	ENSTBEG00000003041	-	85	62.385	Tupaia_belangeri
MGP_CAROLIEiJ_G0028760	Mbd4	99	65.901	ENSTTRG00000011265	MBD4	99	65.901	Tursiops_truncatus
MGP_CAROLIEiJ_G0028760	Mbd4	88	69.461	ENSUAMG00000000814	MBD4	99	69.461	Ursus_americanus
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.783	ENSUMAG00000017542	MBD4	100	66.783	Ursus_maritimus
MGP_CAROLIEiJ_G0028760	Mbd4	64	65.385	ENSVPAG00000004040	-	66	65.385	Vicugna_pacos
MGP_CAROLIEiJ_G0028760	Mbd4	100	66.031	ENSVVUG00000014222	MBD4	99	66.031	Vulpes_vulpes
MGP_CAROLIEiJ_G0028760	Mbd4	86	42.745	ENSXMAG00000021129	mbd4	98	44.055	Xiphophorus_maculatus