EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0028824 (Gene tree)
Gene ID: 110295779
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 10623 bases
Position: chr6:117501796-117512418
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0075903	APOBEC_N	PF08210.11	3e-45	1	1
MGP_CAROLIEiJ_P0075903	APOBEC_C	PF05240.14	3.2e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0075903	-	1964	-	MGP_CAROLIEiJ_P0075903	142 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0028824's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0028824's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0028824	-	95	41.304	MGP_CAROLIEiJ_G0020029	Apobec3	66	43.860
MGP_CAROLIEiJ_G0028824	-	91	34.615	MGP_CAROLIEiJ_G0021727	Apobec2	57	34.615

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0028824	-	100	92.254	ENSG00000111732	AICDA	97	92.143	Homo_sapiens
MGP_CAROLIEiJ_G0028824	-	99	54.605	ENSAPOG00000023552	aicda	69	57.463	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0028824	-	99	95.000	ENSAMEG00000007082	AICDA	71	95.000	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0028824	-	98	60.993	ENSACIG00000012301	aicda	72	60.993	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0028824	-	100	56.643	ENSAOCG00000000482	aicda	72	56.643	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0028824	-	100	56.643	ENSAPEG00000009755	aicda	72	56.643	Amphiprion_percula
MGP_CAROLIEiJ_G0028824	-	99	60.563	ENSATEG00000022035	aicda	69	60.563	Anabas_testudineus
MGP_CAROLIEiJ_G0028824	-	99	88.571	ENSAPLG00000013954	AICDA	70	88.571	Anas_platyrhynchos
MGP_CAROLIEiJ_G0028824	-	100	87.324	ENSACAG00000017441	AICDA	71	87.324	Anolis_carolinensis
MGP_CAROLIEiJ_G0028824	-	100	95.775	ENSANAG00000022438	AICDA	72	95.775	Aotus_nancymaae
MGP_CAROLIEiJ_G0028824	-	98	60.284	ENSACLG00000022679	aicda	72	60.284	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0028824	-	99	60.265	ENSAMXG00000037242	aicda	63	60.265	Astyanax_mexicanus
MGP_CAROLIEiJ_G0028824	-	100	90.909	ENSBTAG00000018849	AICDA	72	90.909	Bos_taurus
MGP_CAROLIEiJ_G0028824	-	100	95.775	ENSCJAG00000018856	AICDA	72	95.775	Callithrix_jacchus
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSCAFG00000013897	AICDA	61	95.070	Canis_familiaris
MGP_CAROLIEiJ_G0028824	-	100	93.662	ENSCAFG00020003515	AICDA	71	93.662	Canis_lupus_dingo
MGP_CAROLIEiJ_G0028824	-	100	88.112	ENSCHIG00000012409	AICDA	72	88.112	Capra_hircus
MGP_CAROLIEiJ_G0028824	-	98	92.806	ENSTSYG00000011304	AICDA	70	92.806	Carlito_syrichta
MGP_CAROLIEiJ_G0028824	-	100	92.254	ENSCPOG00000037838	-	78	92.254	Cavia_porcellus
MGP_CAROLIEiJ_G0028824	-	96	94.161	ENSCPOG00000030440	-	71	94.161	Cavia_porcellus
MGP_CAROLIEiJ_G0028824	-	96	93.431	ENSCPOG00000039255	-	71	93.431	Cavia_porcellus
MGP_CAROLIEiJ_G0028824	-	100	95.775	ENSCCAG00000030398	AICDA	89	95.775	Cebus_capucinus
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSCATG00000039986	AICDA	96	95.000	Cercocebus_atys
MGP_CAROLIEiJ_G0028824	-	99	95.000	ENSCSAG00000009663	AICDA	71	95.000	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0028824	-	100	90.210	ENSCHOG00000010248	AICDA	72	90.210	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0028824	-	99	90.714	ENSCPBG00000014337	AICDA	70	90.714	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSCANG00000035131	AICDA	72	95.070	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0028824	-	100	99.296	ENSCGRG00001009654	Aicda	72	99.296	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0028824	-	100	99.296	ENSCGRG00000013829	Aicda	72	99.296	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0028824	-	100	55.195	ENSCSEG00000018589	aicda	72	55.195	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0028824	-	99	59.028	ENSCVAG00000001218	aicda	72	59.028	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0028824	-	100	62.914	ENSDARG00000015734	aicda	72	62.914	Danio_rerio
MGP_CAROLIEiJ_G0028824	-	99	90.714	ENSETEG00000014702	AICDA	78	90.714	Echinops_telfairi
MGP_CAROLIEiJ_G0028824	-	100	92.958	ENSEASG00005015947	AICDA	87	83.333	Equus_asinus_asinus
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSECAG00000018578	AICDA	72	95.070	Equus_caballus
MGP_CAROLIEiJ_G0028824	-	99	92.857	ENSEEUG00000013899	AICDA	78	92.857	Erinaceus_europaeus
MGP_CAROLIEiJ_G0028824	-	100	58.442	ENSELUG00000016293	aicda	72	58.442	Esox_lucius
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSFCAG00000006052	AICDA	61	95.070	Felis_catus
MGP_CAROLIEiJ_G0028824	-	99	80.714	ENSFALG00000007261	AICDA	71	80.714	Ficedula_albicollis
MGP_CAROLIEiJ_G0028824	-	100	83.099	ENSFDAG00000011141	AICDA	76	83.099	Fukomys_damarensis
MGP_CAROLIEiJ_G0028824	-	97	56.000	ENSFHEG00000015733	aicda	72	56.000	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0028824	-	100	56.774	ENSGMOG00000004114	aicda	72	56.774	Gadus_morhua
MGP_CAROLIEiJ_G0028824	-	100	88.732	ENSGALG00000014280	AICDA	72	88.732	Gallus_gallus
MGP_CAROLIEiJ_G0028824	-	98	52.980	ENSGAFG00000013758	aicda	70	52.980	Gambusia_affinis
MGP_CAROLIEiJ_G0028824	-	100	53.896	ENSGACG00000010521	aicda	72	53.896	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0028824	-	99	90.000	ENSGAGG00000011838	-	82	82.759	Gopherus_agassizii
MGP_CAROLIEiJ_G0028824	-	100	90.141	ENSGAGG00000011839	-	87	83.333	Gopherus_agassizii
MGP_CAROLIEiJ_G0028824	-	100	92.254	ENSGGOG00000003338	AICDA	76	92.254	Gorilla_gorilla
MGP_CAROLIEiJ_G0028824	-	98	60.284	ENSHBUG00000014333	aicda	72	60.284	Haplochromis_burtoni
MGP_CAROLIEiJ_G0028824	-	99	95.714	ENSHGLG00000001443	AICDA	70	95.714	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0028824	-	100	95.775	ENSHGLG00100001381	AICDA	72	95.775	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0028824	-	94	58.088	ENSHCOG00000018886	aicda	68	58.088	Hippocampus_comes
MGP_CAROLIEiJ_G0028824	-	100	57.516	ENSIPUG00000007380	aicda	72	57.516	Ictalurus_punctatus
MGP_CAROLIEiJ_G0028824	-	100	95.775	ENSSTOG00000010972	AICDA	72	95.775	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0028824	-	100	96.479	ENSJJAG00000000908	Aicda	78	96.479	Jaculus_jaculus
MGP_CAROLIEiJ_G0028824	-	100	58.741	ENSKMAG00000006359	aicda	72	58.741	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0028824	-	100	52.632	ENSLBEG00000015351	aicda	73	53.896	Labrus_bergylta
MGP_CAROLIEiJ_G0028824	-	99	72.857	ENSLACG00000009320	aicda	94	72.857	Latimeria_chalumnae
MGP_CAROLIEiJ_G0028824	-	99	90.000	ENSLAFG00000000721	AICDA	72	90.000	Loxodonta_africana
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSMFAG00000037834	AICDA	96	95.000	Macaca_fascicularis
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSMMUG00000019134	AICDA	96	95.000	Macaca_mulatta
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSMNEG00000043421	AICDA	96	95.000	Macaca_nemestrina
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSMLEG00000040938	AICDA	96	95.000	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0028824	-	64	95.604	ENSMLEG00000039759	-	66	82.301	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0028824	-	100	57.143	ENSMAMG00000020032	aicda	73	56.954	Mastacembelus_armatus
MGP_CAROLIEiJ_G0028824	-	98	60.284	ENSMZEG00005016678	aicda	72	60.284	Maylandia_zebra
MGP_CAROLIEiJ_G0028824	-	99	88.571	ENSMGAG00000013942	AICDA	71	88.571	Meleagris_gallopavo
MGP_CAROLIEiJ_G0028824	-	100	99.296	ENSMAUG00000012229	Aicda	72	99.296	Mesocricetus_auratus
MGP_CAROLIEiJ_G0028824	-	100	94.406	ENSMICG00000011695	AICDA	73	93.750	Microcebus_murinus
MGP_CAROLIEiJ_G0028824	-	100	96.479	ENSMOCG00000022460	Aicda	72	96.479	Microtus_ochrogaster
MGP_CAROLIEiJ_G0028824	-	100	55.844	ENSMMOG00000016707	aicda	72	55.844	Mola_mola
MGP_CAROLIEiJ_G0028824	-	96	89.051	ENSMODG00000018002	AICDA	71	89.051	Monodelphis_domestica
MGP_CAROLIEiJ_G0028824	-	100	55.195	ENSMALG00000010442	aicda	72	55.195	Monopterus_albus
MGP_CAROLIEiJ_G0028824	-	100	100.000	ENSMUSG00000040627	Aicda	72	100.000	Mus_musculus
MGP_CAROLIEiJ_G0028824	-	100	100.000	MGP_PahariEiJ_G0022579	Aicda	72	100.000	Mus_pahari
MGP_CAROLIEiJ_G0028824	-	100	100.000	MGP_SPRETEiJ_G0029856	Aicda	72	100.000	Mus_spretus
MGP_CAROLIEiJ_G0028824	-	100	95.775	ENSMPUG00000017533	AICDA	68	95.775	Mustela_putorius_furo
MGP_CAROLIEiJ_G0028824	-	99	95.714	ENSMLUG00000007881	AICDA	71	95.714	Myotis_lucifugus
MGP_CAROLIEiJ_G0028824	-	100	96.479	ENSNGAG00000023430	Aicda	72	96.479	Nannospalax_galili
MGP_CAROLIEiJ_G0028824	-	100	55.844	ENSNBRG00000000070	aicda	68	60.448	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0028824	-	100	93.662	ENSNLEG00000001917	AICDA	72	93.662	Nomascus_leucogenys
MGP_CAROLIEiJ_G0028824	-	99	88.571	ENSMEUG00000006570	AICDA	70	88.571	Notamacropus_eugenii
MGP_CAROLIEiJ_G0028824	-	98	89.928	ENSOPRG00000013486	AICDA	71	89.928	Ochotona_princeps
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSODEG00000001235	AICDA	78	95.070	Octodon_degus
MGP_CAROLIEiJ_G0028824	-	100	55.195	ENSONIG00000012823	aicda	72	55.195	Oreochromis_niloticus
MGP_CAROLIEiJ_G0028824	-	99	95.714	ENSOANG00000007150	AICDA	71	95.714	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0028824	-	96	93.431	ENSOCUG00000023739	AICDA	71	93.431	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0028824	-	100	57.639	ENSORLG00000011705	aicda	72	57.639	Oryzias_latipes
MGP_CAROLIEiJ_G0028824	-	100	57.639	ENSORLG00020006547	aicda	72	57.639	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0028824	-	98	58.156	ENSORLG00015012504	aicda	70	58.156	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0028824	-	100	57.639	ENSOMEG00000011880	aicda	70	57.639	Oryzias_melastigma
MGP_CAROLIEiJ_G0028824	-	99	95.714	ENSOGAG00000026770	AICDA	71	95.714	Otolemur_garnettii
MGP_CAROLIEiJ_G0028824	-	100	86.897	ENSOARG00000001982	AICDA	72	86.897	Ovis_aries
MGP_CAROLIEiJ_G0028824	-	100	92.254	ENSPPAG00000038169	AICDA	76	92.143	Pan_paniscus
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSPPRG00000012985	AICDA	72	95.070	Panthera_pardus
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSPTIG00000020074	AICDA	72	95.070	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0028824	-	100	92.958	ENSPTRG00000004640	AICDA	76	92.857	Pan_troglodytes
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSPANG00000017883	AICDA	96	95.000	Papio_anubis
MGP_CAROLIEiJ_G0028824	-	88	60.448	ENSPKIG00000001499	aicda	71	60.448	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0028824	-	99	90.000	ENSPSIG00000013283	AICDA	71	90.000	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0028824	-	93	57.042	ENSPMGG00000014598	aicda	67	57.343	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0028824	-	100	97.183	ENSPEMG00000008352	Aicda	72	97.183	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0028824	-	100	88.732	ENSPCIG00000023974	AICDA	72	88.732	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0028824	-	97	54.000	ENSPFOG00000011197	aicda	71	55.882	Poecilia_formosa
MGP_CAROLIEiJ_G0028824	-	100	53.247	ENSPLAG00000014098	aicda	73	53.247	Poecilia_latipinna
MGP_CAROLIEiJ_G0028824	-	100	53.247	ENSPMEG00000024203	aicda	72	53.247	Poecilia_mexicana
MGP_CAROLIEiJ_G0028824	-	100	53.247	ENSPREG00000009041	aicda	72	53.247	Poecilia_reticulata
MGP_CAROLIEiJ_G0028824	-	99	93.571	ENSPPYG00000004242	AICDA	71	93.571	Pongo_abelii
MGP_CAROLIEiJ_G0028824	-	66	91.579	ENSPCOG00000003380	-	57	91.579	Propithecus_coquereli
MGP_CAROLIEiJ_G0028824	-	100	92.958	ENSPVAG00000012185	AICDA	72	92.958	Pteropus_vampyrus
MGP_CAROLIEiJ_G0028824	-	98	60.284	ENSPNYG00000000988	aicda	72	60.284	Pundamilia_nyererei
MGP_CAROLIEiJ_G0028824	-	100	60.131	ENSPNAG00000019237	aicda	92	60.544	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0028824	-	100	99.296	ENSRNOG00000015478	Aicda	72	99.296	Rattus_norvegicus
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSRBIG00000026659	AICDA	76	95.000	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0028824	-	100	95.070	ENSRROG00000032866	AICDA	76	95.000	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0028824	-	100	94.366	ENSSBOG00000035758	AICDA	89	94.366	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0028824	-	100	88.732	ENSSHAG00000008694	AICDA	72	88.732	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0028824	-	100	58.940	ENSSFOG00015001695	aicda	72	58.940	Scleropages_formosus
MGP_CAROLIEiJ_G0028824	-	100	55.195	ENSSMAG00000012339	aicda	69	55.195	Scophthalmus_maximus
MGP_CAROLIEiJ_G0028824	-	99	58.865	ENSSDUG00000009894	aicda	69	58.865	Seriola_dumerili
MGP_CAROLIEiJ_G0028824	-	98	59.286	ENSSLDG00000023022	aicda	72	55.195	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0028824	-	96	83.942	ENSSPUG00000009022	AICDA	70	83.942	Sphenodon_punctatus
MGP_CAROLIEiJ_G0028824	-	100	92.958	ENSSSCG00000000667	AICDA	77	92.958	Sus_scrofa
MGP_CAROLIEiJ_G0028824	-	99	80.000	ENSTGUG00000013115	AICDA	71	80.000	Taeniopygia_guttata
MGP_CAROLIEiJ_G0028824	-	100	55.844	ENSTRUG00000007079	aicda	72	55.844	Takifugu_rubripes
MGP_CAROLIEiJ_G0028824	-	99	56.579	ENSTNIG00000008118	aicda	71	56.579	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0028824	-	85	90.083	ENSTBEG00000002559	AICDA	62	90.083	Tupaia_belangeri
MGP_CAROLIEiJ_G0028824	-	100	92.308	ENSTTRG00000000703	AICDA	79	92.308	Tursiops_truncatus
MGP_CAROLIEiJ_G0028824	-	95	94.815	ENSUAMG00000011642	AICDA	94	94.815	Ursus_americanus
MGP_CAROLIEiJ_G0028824	-	95	94.815	ENSUMAG00000016540	AICDA	94	94.815	Ursus_maritimus
MGP_CAROLIEiJ_G0028824	-	63	92.308	ENSVPAG00000003950	AICDA	62	92.308	Vicugna_pacos
MGP_CAROLIEiJ_G0028824	-	99	68.794	ENSXETG00000023905	aicda	70	68.794	Xenopus_tropicalis
MGP_CAROLIEiJ_G0028824	-	98	54.286	ENSXCOG00000019386	aicda	64	54.286	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0028824	-	98	56.429	ENSXMAG00000011889	aicda	65	56.429	Xiphophorus_maculatus