EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0028947 (Gene tree)
Gene ID: 110296844
Gene Symbol: Ybx3
Alias: Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 23611 bases
Position: chr6:128334807-128358417
Accession: 110296844
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0076385	CSD	PF00313.22	3.6e-26	1	1
MGP_CAROLIEiJ_P0076384	CSD	PF00313.22	6.5e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0076388	-	756	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0076384	-	1684	XM_021165633	MGP_CAROLIEiJ_P0076384	292 (aa)	XP_021021292	UPI000A314E26
MGP_CAROLIEiJ_T0076385	-	1853	XM_021165632	MGP_CAROLIEiJ_P0076385	361 (aa)	XP_021021291	UPI000A317AB2
MGP_CAROLIEiJ_T0076386	-	837	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0076387	-	1026	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0028947's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0028947's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0028947	Ybx3	83	50.316	MGP_CAROLIEiJ_G0026396	Ybx1	90	57.468

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.871	ENSG00000060138	YBX3	91	97.619	Homo_sapiens
MGP_CAROLIEiJ_G0028947	Ybx3	96	85.227	ENSAMEG00000009393	YBX3	89	90.385	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0028947	Ybx3	73	98.077	ENSAPLG00000003147	YBX3	76	98.077	Anas_platyrhynchos
MGP_CAROLIEiJ_G0028947	Ybx3	100	64.452	ENSANAG00000033366	-	77	78.049	Aotus_nancymaae
MGP_CAROLIEiJ_G0028947	Ybx3	86	86.520	ENSANAG00000024492	-	100	89.241	Aotus_nancymaae
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.421	ENSBTAG00000009663	YBX3	83	87.220	Bos_taurus
MGP_CAROLIEiJ_G0028947	Ybx3	96	66.549	ENSCJAG00000033824	-	81	84.810	Callithrix_jacchus
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.827	ENSCJAG00000021660	-	86	88.365	Callithrix_jacchus
MGP_CAROLIEiJ_G0028947	Ybx3	79	93.031	ENSCAFG00000013401	YBX3	100	94.009	Canis_familiaris
MGP_CAROLIEiJ_G0028947	Ybx3	100	81.867	ENSCAFG00020006412	YBX3	84	88.924	Canis_lupus_dingo
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.421	ENSCHIG00000010863	YBX3	88	90.096	Capra_hircus
MGP_CAROLIEiJ_G0028947	Ybx3	100	73.737	ENSTSYG00000035821	-	72	95.745	Carlito_syrichta
MGP_CAROLIEiJ_G0028947	Ybx3	79	93.031	ENSTSYG00000004204	-	96	88.254	Carlito_syrichta
MGP_CAROLIEiJ_G0028947	Ybx3	79	88.112	ENSCAPG00000015039	YBX3	93	88.112	Cavia_aperea
MGP_CAROLIEiJ_G0028947	Ybx3	81	89.078	ENSCPOG00000011329	YBX3	90	89.754	Cavia_porcellus
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.602	ENSCCAG00000016469	YBX3	85	88.365	Cebus_capucinus
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.646	ENSCATG00000034411	YBX3	85	88.679	Cercocebus_atys
MGP_CAROLIEiJ_G0028947	Ybx3	79	89.161	ENSCLAG00000016030	YBX3	94	89.161	Chinchilla_lanigera
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.378	ENSCSAG00000008744	YBX3	85	88.365	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0028947	Ybx3	94	76.301	ENSCHOG00000011988	YBX3	56	95.745	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0028947	Ybx3	80	79.725	ENSCPBG00000014147	YBX3	78	86.957	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0028947	Ybx3	57	56.818	ENSCING00000010654	yb1/2/3	73	54.673	Ciona_intestinalis
MGP_CAROLIEiJ_G0028947	Ybx3	81	89.831	ENSCANG00000036801	YBX3	100	88.571	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0028947	Ybx3	100	97.945	ENSCGRG00001016148	Ybx3	100	97.945	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0028947	Ybx3	79	96.194	ENSCGRG00000004563	Ybx3	98	96.194	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0028947	Ybx3	91	82.979	ENSDORG00000009103	Ybx3	89	85.714	Dipodomys_ordii
MGP_CAROLIEiJ_G0028947	Ybx3	78	82.807	ENSETEG00000002557	YBX3	99	82.042	Echinops_telfairi
MGP_CAROLIEiJ_G0028947	Ybx3	100	81.572	ENSEASG00005014726	YBX3	100	84.011	Equus_asinus_asinus
MGP_CAROLIEiJ_G0028947	Ybx3	100	84.553	ENSECAG00000013777	YBX3	100	86.992	Equus_caballus
MGP_CAROLIEiJ_G0028947	Ybx3	78	89.789	ENSEEUG00000010415	YBX3	100	91.197	Erinaceus_europaeus
MGP_CAROLIEiJ_G0028947	Ybx3	100	84.718	ENSFCAG00000027748	YBX3	85	91.167	Felis_catus
MGP_CAROLIEiJ_G0028947	Ybx3	73	94.444	ENSFALG00000003661	YBX3	71	98.837	Ficedula_albicollis
MGP_CAROLIEiJ_G0028947	Ybx3	79	85.315	ENSFDAG00000021192	YBX3	92	85.315	Fukomys_damarensis
MGP_CAROLIEiJ_G0028947	Ybx3	91	71.852	ENSGALG00000031890	YBX3	78	86.087	Gallus_gallus
MGP_CAROLIEiJ_G0028947	Ybx3	91	73.881	ENSGAGG00000017780	YBX3	78	88.596	Gopherus_agassizii
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.646	ENSGGOG00000001352	YBX3	85	88.679	Gorilla_gorilla
MGP_CAROLIEiJ_G0028947	Ybx3	83	77.632	ENSHGLG00000014798	-	90	80.000	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0028947	Ybx3	75	80.515	ENSHGLG00000015495	-	87	79.252	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0028947	Ybx3	74	91.284	ENSHGLG00100003589	YBX3	87	91.284	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0028947	Ybx3	93	84.412	ENSSTOG00000032577	-	87	85.577	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0028947	Ybx3	79	86.972	ENSSTOG00000002108	-	88	86.972	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0028947	Ybx3	81	70.748	ENSJJAG00000014239	Ybx3	100	85.417	Jaculus_jaculus
MGP_CAROLIEiJ_G0028947	Ybx3	100	86.992	ENSLAFG00000017247	YBX3	94	86.076	Loxodonta_africana
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.602	ENSMFAG00000039369	YBX3	85	88.365	Macaca_fascicularis
MGP_CAROLIEiJ_G0028947	Ybx3	88	85.538	ENSMMUG00000022469	YBX3	98	88.365	Macaca_mulatta
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.333	ENSMNEG00000045109	YBX3	85	88.365	Macaca_nemestrina
MGP_CAROLIEiJ_G0028947	Ybx3	93	82.006	ENSMLEG00000033618	YBX3	81	91.608	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0028947	Ybx3	72	98.095	ENSMGAG00000014224	YBX3	93	100.000	Meleagris_gallopavo
MGP_CAROLIEiJ_G0028947	Ybx3	88	97.179	ENSMAUG00000012185	Ybx3	100	97.200	Mesocricetus_auratus
MGP_CAROLIEiJ_G0028947	Ybx3	100	74.150	ENSMICG00000031459	-	85	76.543	Microcebus_murinus
MGP_CAROLIEiJ_G0028947	Ybx3	100	85.135	ENSMICG00000038002	-	85	91.772	Microcebus_murinus
MGP_CAROLIEiJ_G0028947	Ybx3	86	96.764	ENSMOCG00000016291	Ybx3	100	98.355	Microtus_ochrogaster
MGP_CAROLIEiJ_G0028947	Ybx3	78	83.916	ENSMODG00000018248	YBX3	91	83.624	Monodelphis_domestica
MGP_CAROLIEiJ_G0028947	Ybx3	100	99.658	ENSMUSG00000030189	Ybx3	100	99.658	Mus_musculus
MGP_CAROLIEiJ_G0028947	Ybx3	100	99.658	MGP_PahariEiJ_G0022709	Ybx3	100	99.658	Mus_pahari
MGP_CAROLIEiJ_G0028947	Ybx3	100	100.000	MGP_SPRETEiJ_G0029994	Ybx3	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0028947	Ybx3	100	71.053	ENSMPUG00000011810	YBX3	85	75.077	Mustela_putorius_furo
MGP_CAROLIEiJ_G0028947	Ybx3	73	89.963	ENSMLUG00000007476	YBX3	100	89.963	Myotis_lucifugus
MGP_CAROLIEiJ_G0028947	Ybx3	81	90.136	ENSNGAG00000000710	Ybx3	97	91.743	Nannospalax_galili
MGP_CAROLIEiJ_G0028947	Ybx3	87	83.489	ENSNLEG00000034844	YBX3	90	84.906	Nomascus_leucogenys
MGP_CAROLIEiJ_G0028947	Ybx3	87	81.505	ENSODEG00000017957	YBX3	93	83.544	Octodon_degus
MGP_CAROLIEiJ_G0028947	Ybx3	81	88.095	ENSOCUG00000001889	YBX3	88	87.748	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0028947	Ybx3	100	85.411	ENSOGAG00000013245	YBX3	86	90.093	Otolemur_garnettii
MGP_CAROLIEiJ_G0028947	Ybx3	71	97.938	ENSOARG00000020919	YBX3	99	80.936	Ovis_aries
MGP_CAROLIEiJ_G0028947	Ybx3	100	81.096	ENSPPAG00000039068	YBX3	82	91.554	Pan_paniscus
MGP_CAROLIEiJ_G0028947	Ybx3	100	84.987	ENSPPRG00000005859	YBX3	85	91.483	Panthera_pardus
MGP_CAROLIEiJ_G0028947	Ybx3	78	93.662	ENSPTIG00000005322	YBX3	81	93.357	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.422	ENSPTRG00000004681	YBX3	85	88.679	Pan_troglodytes
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.871	ENSPANG00000010280	YBX3	85	88.679	Papio_anubis
MGP_CAROLIEiJ_G0028947	Ybx3	73	84.186	ENSPSIG00000009247	YBX3	100	84.186	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0028947	Ybx3	83	97.095	ENSPEMG00000010391	-	92	97.095	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0028947	Ybx3	88	97.468	ENSPEMG00000012132	-	100	97.571	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0028947	Ybx3	71	82.625	ENSPCIG00000029949	YBX3	100	82.625	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.827	ENSPPYG00000004279	YBX3	100	84.906	Pongo_abelii
MGP_CAROLIEiJ_G0028947	Ybx3	78	85.069	ENSPCAG00000001397	YBX3	100	87.153	Procavia_capensis
MGP_CAROLIEiJ_G0028947	Ybx3	51	90.710	ENSPCOG00000011663	YBX3	80	87.317	Propithecus_coquereli
MGP_CAROLIEiJ_G0028947	Ybx3	82	78.333	ENSPVAG00000006740	YBX3	85	77.918	Pteropus_vampyrus
MGP_CAROLIEiJ_G0028947	Ybx3	100	98.615	ENSRNOG00000005480	Ybx3	100	98.615	Rattus_norvegicus
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.558	ENSRBIG00000039208	YBX3	100	84.097	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0028947	Ybx3	100	83.558	ENSRROG00000029638	YBX3	100	84.636	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0028947	Ybx3	100	77.628	ENSSBOG00000030573	YBX3	86	90.034	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0028947	Ybx3	66	98.837	ENSSHAG00000003262	YBX3	98	83.505	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0028947	Ybx3	91	85.965	ENSSSCG00000000633	YBX3	84	90.625	Sus_scrofa
MGP_CAROLIEiJ_G0028947	Ybx3	72	97.143	ENSTGUG00000012047	YBX3	75	97.143	Taeniopygia_guttata
MGP_CAROLIEiJ_G0028947	Ybx3	100	80.654	ENSTBEG00000012570	YBX3	83	90.698	Tupaia_belangeri
MGP_CAROLIEiJ_G0028947	Ybx3	72	82.331	ENSTTRG00000008045	YBX3	100	83.459	Tursiops_truncatus
MGP_CAROLIEiJ_G0028947	Ybx3	76	89.531	ENSUAMG00000016662	YBX3	100	89.531	Ursus_americanus
MGP_CAROLIEiJ_G0028947	Ybx3	78	92.958	ENSUMAG00000016118	YBX3	94	92.657	Ursus_maritimus
MGP_CAROLIEiJ_G0028947	Ybx3	59	100.000	ENSVPAG00000000876	YBX3	100	70.070	Vicugna_pacos
MGP_CAROLIEiJ_G0028947	Ybx3	76	89.170	ENSVVUG00000004956	YBX3	100	89.531	Vulpes_vulpes
MGP_CAROLIEiJ_G0028947	Ybx3	74	72.727	ENSXETG00000016239	ybx3	86	82.857	Xenopus_tropicalis