EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0029815 (Gene tree)
Gene ID: 110297807
Gene Symbol: Snrpn
Alias: 2410045I01Rik|Peg4|Pwcr1
Full Name: small nuclear ribonucleoprotein polypeptide N
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 22342 bases
Position: chr7:62128606-62150947
Accession: 110297807
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0079905	LSM	PF01423.22	1.2e-19	1	1
MGP_CAROLIEiJ_P0079906	LSM	PF01423.22	1.2e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0079906	-	1920	XM_021166812	MGP_CAROLIEiJ_P0079906	240 (aa)	XP_021022471	UPI000002948A
MGP_CAROLIEiJ_T0079905	-	1916	XM_021166813	MGP_CAROLIEiJ_P0079905	240 (aa)	XP_021022472	UPI000002948A

Gene Model

Click here to download MGP_CAROLIEiJ_G0029815's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0029815's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0029815	Snrpn	92	93.213	MGP_CAROLIEiJ_G0024293	Snrpb	96	93.213

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSG00000128739	SNRPN	100	100.000	Homo_sapiens
MGP_CAROLIEiJ_G0029815	Snrpn	99	99.582	ENSAMEG00000007034	SNRPN	98	99.582	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSANAG00000034241	SNRPN	100	100.000	Aotus_nancymaae
MGP_CAROLIEiJ_G0029815	Snrpn	100	98.750	ENSBTAG00000008251	SNRPN	100	98.750	Bos_taurus
MGP_CAROLIEiJ_G0029815	Snrpn	95	99.561	ENSCJAG00000042622	-	95	99.561	Callithrix_jacchus
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSCJAG00000003759	-	100	100.000	Callithrix_jacchus
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.583	ENSCAFG00000010127	SNRPN	100	99.583	Canis_familiaris
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.583	ENSCAFG00020024075	SNRPN	100	99.583	Canis_lupus_dingo
MGP_CAROLIEiJ_G0029815	Snrpn	100	98.750	ENSCHIG00000017477	SNRPN	100	98.750	Capra_hircus
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSTSYG00000005248	SNRPN	100	100.000	Carlito_syrichta
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSCAPG00000003047	SNRPN	100	100.000	Cavia_aperea
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSCPOG00000020270	SNRPN	100	100.000	Cavia_porcellus
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSCCAG00000024231	SNRPN	100	100.000	Cebus_capucinus
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSCATG00000032518	SNRPN	100	100.000	Cercocebus_atys
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSCLAG00000011376	SNRPN	100	100.000	Chinchilla_lanigera
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSCSAG00000006406	SNRPN	100	100.000	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0029815	Snrpn	98	98.718	ENSCHOG00000001846	SNRPN	88	98.718	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSCANG00000041156	SNRPN	100	100.000	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.583	ENSCGRG00001004136	Snrpn	100	99.583	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.167	ENSCGRG00000001621	Snrpn	100	99.167	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0029815	Snrpn	72	92.486	ENSCVAG00000014193	SNRPN	69	92.857	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0029815	Snrpn	99	99.163	ENSDNOG00000037060	SNRPN	98	99.163	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.583	ENSDORG00000004527	Snrpn	100	99.583	Dipodomys_ordii
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.583	ENSEASG00005017871	SNRPN	100	99.583	Equus_asinus_asinus
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.583	ENSECAG00000018148	SNRPN	100	99.583	Equus_caballus
MGP_CAROLIEiJ_G0029815	Snrpn	99	98.745	ENSEEUG00000007440	-	100	98.745	Erinaceus_europaeus
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.583	ENSFCAG00000022298	-	100	99.583	Felis_catus
MGP_CAROLIEiJ_G0029815	Snrpn	76	85.792	ENSFDAG00000010528	-	86	85.792	Fukomys_damarensis
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.583	ENSFDAG00000016578	-	100	99.583	Fukomys_damarensis
MGP_CAROLIEiJ_G0029815	Snrpn	74	76.836	ENSGMOG00000018161	SNRPN	74	76.190	Gadus_morhua
MGP_CAROLIEiJ_G0029815	Snrpn	90	73.488	ENSGGOG00000024469	-	69	83.942	Gorilla_gorilla
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSGGOG00000003988	SNRPN	100	100.000	Gorilla_gorilla
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSHGLG00000011924	SNRPN	100	100.000	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0029815	Snrpn	89	91.549	ENSHGLG00000019812	-	89	91.080	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0029815	Snrpn	100	85.417	ENSHGLG00000002327	-	88	84.977	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0029815	Snrpn	90	80.930	ENSHGLG00000020936	-	88	79.812	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0029815	Snrpn	100	82.917	ENSHGLG00100004881	-	88	83.099	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0029815	Snrpn	89	91.549	ENSHGLG00100021056	-	89	91.080	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSHGLG00100016559	SNRPN	100	100.000	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSSTOG00000001339	SNRPN	100	100.000	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0029815	Snrpn	99	99.582	ENSLAFG00000009458	SNRPN	99	99.582	Loxodonta_africana
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSMFAG00000042235	SNRPN	100	100.000	Macaca_fascicularis
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSMMUG00000023139	SNURF	100	100.000	Macaca_mulatta
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSMNEG00000031291	SNRPN	100	100.000	Macaca_nemestrina
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSMLEG00000038837	SNRPN	100	100.000	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0029815	Snrpn	92	85.909	ENSMGAG00000008696	SNRPN	92	85.909	Meleagris_gallopavo
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSMAUG00000000051	Snrpn	100	100.000	Mesocricetus_auratus
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSMICG00000042356	SNRPN	100	100.000	Microcebus_murinus
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSMOCG00000015350	Snrpn	100	100.000	Microtus_ochrogaster
MGP_CAROLIEiJ_G0029815	Snrpn	92	94.118	ENSMODG00000013926	-	92	94.118	Monodelphis_domestica
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSMUSG00000102252	Snrpn	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	MGP_PahariEiJ_G0013040	Snrpn	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	MGP_SPRETEiJ_G0030918	Snrpn	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0029815	Snrpn	88	51.659	ENSMPUG00000007115	-	64	70.423	Mustela_putorius_furo
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.583	ENSMPUG00000014638	-	100	99.583	Mustela_putorius_furo
MGP_CAROLIEiJ_G0029815	Snrpn	99	99.163	ENSMLUG00000023361	-	98	99.163	Myotis_lucifugus
MGP_CAROLIEiJ_G0029815	Snrpn	85	60.784	ENSMLUG00000025849	-	73	63.057	Myotis_lucifugus
MGP_CAROLIEiJ_G0029815	Snrpn	95	62.281	ENSMLUG00000024428	-	62	71.111	Myotis_lucifugus
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSNGAG00000000181	Snrpn	100	100.000	Nannospalax_galili
MGP_CAROLIEiJ_G0029815	Snrpn	100	83.750	ENSNLEG00000001376	SNRPN	99	83.750	Nomascus_leucogenys
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.583	ENSODEG00000013478	-	100	99.583	Octodon_degus
MGP_CAROLIEiJ_G0029815	Snrpn	100	95.833	ENSODEG00000019708	-	89	99.061	Octodon_degus
MGP_CAROLIEiJ_G0029815	Snrpn	98	81.197	ENSODEG00000016065	-	87	86.473	Octodon_degus
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.167	ENSODEG00000020110	-	100	99.167	Octodon_degus
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.585	ENSOCUG00000003532	-	100	99.585	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0029815	Snrpn	74	92.090	ENSORLG00020007490	SNRPN	69	93.452	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0029815	Snrpn	74	92.090	ENSORLG00015003332	SNRPN	69	93.452	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0029815	Snrpn	74	92.655	ENSOMEG00000002066	SNRPN	69	94.048	Oryzias_melastigma
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSOGAG00000007392	SNRPN	100	100.000	Otolemur_garnettii
MGP_CAROLIEiJ_G0029815	Snrpn	100	98.750	ENSOARG00000009080	SNRPN	100	98.750	Ovis_aries
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSPPAG00000027650	SNRPN	100	100.000	Pan_paniscus
MGP_CAROLIEiJ_G0029815	Snrpn	97	69.231	ENSPPAG00000034049	-	65	79.720	Pan_paniscus
MGP_CAROLIEiJ_G0029815	Snrpn	85	64.390	ENSPPRG00000006957	-	73	70.861	Panthera_pardus
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.583	ENSPPRG00000019878	-	100	99.583	Panthera_pardus
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.167	ENSPTIG00000004537	SNRPN	100	99.167	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0029815	Snrpn	97	69.658	ENSPTRG00000052400	-	65	80.420	Pan_troglodytes
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSPTRG00000006826	SNRPN	100	100.000	Pan_troglodytes
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSPANG00000020142	SNRPN	100	100.000	Papio_anubis
MGP_CAROLIEiJ_G0029815	Snrpn	89	95.794	ENSPEMG00000020979	-	89	95.775	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0029815	Snrpn	100	89.583	ENSPEMG00000013920	-	100	89.583	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSPEMG00000012911	-	100	100.000	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0029815	Snrpn	76	97.253	ENSPCIG00000004699	-	68	94.811	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0029815	Snrpn	72	93.642	ENSPMEG00000020674	SNRPN	69	93.452	Poecilia_mexicana
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSPPYG00000006269	SNURF	100	100.000	Pongo_abelii
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSPCOG00000014231	SNRPN	100	100.000	Propithecus_coquereli
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSRNOG00000059764	Snrpn	100	100.000	Rattus_norvegicus
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSRBIG00000041765	SNRPN	100	100.000	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSRROG00000035157	SNRPN	100	100.000	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	ENSSBOG00000000110	-	100	100.000	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0029815	Snrpn	100	98.750	ENSSBOG00000024929	-	100	98.750	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0029815	Snrpn	76	96.721	ENSSHAG00000010257	-	87	94.366	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0029815	Snrpn	99	77.824	ENSSARG00000000072	SNRPN	100	77.824	Sorex_araneus
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.167	ENSSSCG00000028124	SNRPN	100	99.167	Sus_scrofa
MGP_CAROLIEiJ_G0029815	Snrpn	100	98.750	ENSTTRG00000010966	SNRPN	89	98.750	Tursiops_truncatus
MGP_CAROLIEiJ_G0029815	Snrpn	93	99.552	ENSUAMG00000016284	SNRPN	78	99.552	Ursus_americanus
MGP_CAROLIEiJ_G0029815	Snrpn	100	99.583	ENSUMAG00000025589	SNRPN	100	99.583	Ursus_maritimus
MGP_CAROLIEiJ_G0029815	Snrpn	95	99.563	ENSVVUG00000017971	SNRPN	94	99.563	Vulpes_vulpes