EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0030425 (Gene tree)
Gene ID: 110299318
Gene Symbol: Tnrc6a
Alias: 2010321I05Rik|3110054G10Rik|CAGH26|D130023A07Rik|Tnrc6
Full Name: trinucleotide repeat containing 6A
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 72399 bases
Position: chr7:125244029-125316427
Accession: 110299318
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0082000	Ago_hook	PF10427.9	1.4e-17	1	1
MGP_CAROLIEiJ_P0081997	Ago_hook	PF10427.9	5.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0081997	-	8129	XM_021168994	MGP_CAROLIEiJ_P0081997	1877 (aa)	XP_021024653	-
MGP_CAROLIEiJ_T0081996	-	310	-	MGP_CAROLIEiJ_P0081996	53 (aa)	-	-
MGP_CAROLIEiJ_T0081995	-	628	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0081999	-	1783	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0081998	-	3565	-	MGP_CAROLIEiJ_P0081998	35 (aa)	-	-
MGP_CAROLIEiJ_T0082004	-	463	-	MGP_CAROLIEiJ_P0082004	154 (aa)	-	UPI000719A2DB
MGP_CAROLIEiJ_T0082005	-	3305	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0082000	-	5232	-	MGP_CAROLIEiJ_P0082000	1398 (aa)	-	-
MGP_CAROLIEiJ_T0082001	-	4293	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0082002	-	939	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0082003	-	604	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0030425's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0030425's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0030425	Tnrc6a	98	44.753	MGP_CAROLIEiJ_G0017465	Tnrc6c	99	40.741
MGP_CAROLIEiJ_G0030425	Tnrc6a	98	39.043	MGP_CAROLIEiJ_G0020043	Tnrc6b	98	38.141

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.639	ENSG00000090905	TNRC6A	100	95.000	Homo_sapiens
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.711	ENSAMEG00000009333	TNRC6A	99	90.481	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	83.227	ENSAPLG00000009978	TNRC6A	100	78.327	Anas_platyrhynchos
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	59.282	ENSACAG00000011857	TNRC6A	99	55.666	Anolis_carolinensis
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.639	ENSANAG00000025252	TNRC6A	99	93.231	Aotus_nancymaae
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	58.058	ENSAMXG00000019919	tnrc6a	100	58.020	Astyanax_mexicanus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	93.495	ENSBTAG00000017999	TNRC6A	99	91.680	Bos_taurus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.568	ENSCJAG00000020677	TNRC6A	99	91.576	Callithrix_jacchus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.353	ENSCAFG00000017531	TNRC6A	99	92.589	Canis_familiaris
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	92.852	ENSCAFG00020021160	TNRC6A	99	91.807	Canis_lupus_dingo
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	91.574	ENSCHIG00000019448	TNRC6A	99	91.415	Capra_hircus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.353	ENSTSYG00000012711	TNRC6A	99	92.918	Carlito_syrichta
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	93.305	ENSCPOG00000036684	TNRC6A	99	93.358	Cavia_porcellus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.568	ENSCCAG00000033664	TNRC6A	99	93.238	Cebus_capucinus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	93.461	ENSCATG00000019284	TNRC6A	100	92.962	Cercocebus_atys
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	88.161	ENSCLAG00000010217	TNRC6A	99	88.636	Chinchilla_lanigera
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.711	ENSCSAG00000006561	TNRC6A	99	90.890	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	88.492	ENSCHOG00000009374	TNRC6A	92	85.705	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	79.060	ENSCPBG00000001881	TNRC6A	99	80.300	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.711	ENSCANG00000041549	TNRC6A	99	93.340	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	96.426	ENSCGRG00001015021	Tnrc6a	99	96.023	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	94.544	ENSCGRG00000013351	Tnrc6a	99	94.439	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	57.498	ENSDARG00000079688	tnrc6a	99	57.175	Danio_rerio
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	92.023	ENSDNOG00000013989	TNRC6A	99	88.947	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	81.701	ENSETEG00000014658	TNRC6A	99	82.195	Echinops_telfairi
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	93.571	ENSEASG00005017693	TNRC6A	99	92.736	Equus_asinus_asinus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	93.500	ENSECAG00000025056	TNRC6A	99	92.615	Equus_caballus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	87.429	ENSEEUG00000004530	TNRC6A	99	84.178	Erinaceus_europaeus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	93.138	ENSFCAG00000025236	TNRC6A	99	91.848	Felis_catus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	81.294	ENSFALG00000003757	TNRC6A	99	76.703	Ficedula_albicollis
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	79.318	ENSGALG00000006068	TNRC6A	99	80.681	Gallus_gallus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	78.526	ENSGAGG00000023209	TNRC6A	99	79.977	Gopherus_agassizii
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.639	ENSGGOG00000005137	TNRC6A	100	93.042	Gorilla_gorilla
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	68.978	ENSHGLG00000007368	-	93	72.468	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	90.890	ENSHGLG00000012474	-	99	90.837	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	90.982	ENSHGLG00100012496	-	99	91.089	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	93.996	ENSSTOG00000023394	TNRC6A	98	89.938	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	71.992	ENSLACG00000006277	TNRC6A	100	67.552	Latimeria_chalumnae
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	83.002	ENSLOCG00000005517	tnrc6a	92	83.002	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0030425	Tnrc6a	98	92.063	ENSLAFG00000004209	TNRC6A	99	92.166	Loxodonta_africana
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	93.319	ENSMFAG00000003824	TNRC6A	99	89.707	Macaca_fascicularis
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.639	ENSMMUG00000020428	TNRC6A	99	93.129	Macaca_mulatta
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.925	ENSMNEG00000034854	TNRC6A	99	92.902	Macaca_nemestrina
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	93.390	ENSMLEG00000042737	TNRC6A	97	89.073	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	82.424	ENSMGAG00000006455	TNRC6A	99	76.033	Meleagris_gallopavo
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	96.281	ENSMAUG00000012750	Tnrc6a	99	96.281	Mesocricetus_auratus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	95.139	ENSMICG00000030685	TNRC6A	99	93.671	Microcebus_murinus
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	96.330	ENSMOCG00000000152	Tnrc6a	99	96.330	Microtus_ochrogaster
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	83.672	ENSMODG00000016348	TNRC6A	97	78.521	Monodelphis_domestica
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	98.784	ENSMUSG00000052707	Tnrc6a	99	98.784	Mus_musculus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	98.712	MGP_PahariEiJ_G0013635	Tnrc6a	100	98.712	Mus_pahari
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	98.498	MGP_SPRETEiJ_G0031539	Tnrc6a	100	98.498	Mus_spretus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	82.953	ENSMPUG00000012324	TNRC6A	100	82.340	Mustela_putorius_furo
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	92.561	ENSMLUG00000002701	TNRC6A	100	88.133	Myotis_lucifugus
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	93.955	ENSNGAG00000020702	Tnrc6a	99	94.168	Nannospalax_galili
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	91.844	ENSNLEG00000011851	TNRC6A	98	91.640	Nomascus_leucogenys
MGP_CAROLIEiJ_G0030425	Tnrc6a	93	87.929	ENSMEUG00000015959	-	74	82.835	Notamacropus_eugenii
MGP_CAROLIEiJ_G0030425	Tnrc6a	95	98.881	ENSOPRG00000005819	TNRC6A	95	98.881	Ochotona_princeps
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	88.232	ENSODEG00000012802	TNRC6A	99	87.906	Octodon_degus
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	83.107	ENSOANG00000007672	TNRC6A	100	79.143	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	93.143	ENSOCUG00000004325	TNRC6A	100	88.472	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.433	ENSOGAG00000006666	TNRC6A	100	91.172	Otolemur_garnettii
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	93.238	ENSOARG00000017950	TNRC6A	98	92.254	Ovis_aries
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.568	ENSPPAG00000028379	TNRC6A	99	92.951	Pan_paniscus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	93.281	ENSPPRG00000005861	TNRC6A	99	91.953	Panthera_pardus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	93.209	ENSPTIG00000006346	TNRC6A	99	90.933	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.639	ENSPTRG00000007898	TNRC6A	99	90.104	Pan_troglodytes
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	91.494	ENSPANG00000018523	TNRC6A	99	90.732	Papio_anubis
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	77.828	ENSPKIG00000012859	tnrc6a	99	76.355	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	74.098	ENSPSIG00000003965	TNRC6A	99	77.402	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	96.387	ENSPEMG00000016318	Tnrc6a	99	96.387	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	85.653	ENSPCIG00000012106	TNRC6A	100	81.267	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.639	ENSPPYG00000007202	TNRC6A	99	90.241	Pongo_abelii
MGP_CAROLIEiJ_G0030425	Tnrc6a	95	97.938	ENSPCAG00000008260	TNRC6A	93	97.938	Procavia_capensis
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	92.066	ENSPCOG00000010134	TNRC6A	99	91.398	Propithecus_coquereli
MGP_CAROLIEiJ_G0030425	Tnrc6a	85	75.505	ENSPVAG00000012066	TNRC6A	99	69.226	Pteropus_vampyrus
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	97.775	ENSRNOG00000024737	Tnrc6a	99	96.575	Rattus_norvegicus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.711	ENSRBIG00000014222	TNRC6A	99	93.176	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.711	ENSRROG00000032360	TNRC6A	99	91.120	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.639	ENSSBOG00000036197	TNRC6A	100	91.808	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	80.799	ENSSHAG00000008811	TNRC6A	99	82.041	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0030425	Tnrc6a	95	67.766	ENSSFOG00015008920	tnrc6a	100	57.871	Scleropages_formosus
MGP_CAROLIEiJ_G0030425	Tnrc6a	72	75.919	ENSSARG00000002479	TNRC6A	89	75.919	Sorex_araneus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	79.025	ENSSPUG00000010525	TNRC6A	100	77.464	Sphenodon_punctatus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.496	ENSSSCG00000038870	TNRC6A	100	94.518	Sus_scrofa
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	78.932	ENSTGUG00000006142	TNRC6A	99	79.237	Taeniopygia_guttata
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	91.422	ENSTBEG00000014965	TNRC6A	99	88.343	Tupaia_belangeri
MGP_CAROLIEiJ_G0030425	Tnrc6a	91	95.901	ENSTTRG00000002008	TNRC6A	90	90.723	Tursiops_truncatus
MGP_CAROLIEiJ_G0030425	Tnrc6a	79	92.102	ENSUAMG00000006656	-	93	92.436	Ursus_americanus
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.782	ENSUMAG00000008274	TNRC6A	100	94.759	Ursus_maritimus
MGP_CAROLIEiJ_G0030425	Tnrc6a	65	83.832	ENSVPAG00000010764	-	57	86.979	Vicugna_pacos
MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.282	ENSVVUG00000005380	TNRC6A	99	92.657	Vulpes_vulpes
MGP_CAROLIEiJ_G0030425	Tnrc6a	99	67.655	ENSXETG00000030437	TNRC6A	99	63.808	Xenopus_tropicalis