EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0030809 (Gene tree)
Gene ID: 110300200
Gene Symbol: Lig4
Alias: 5830471N16Rik|DNA ligase IV|tiny
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 7503 bases
Position: chr8:6413511-6421013
Accession: 110300200
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0083724	RNA_ligase	PF09414.10	7.5e-10	1	1
MGP_CAROLIEiJ_P0083725	RNA_ligase	PF09414.10	7.5e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0083724	-	4052	-	MGP_CAROLIEiJ_P0083724	911 (aa)	XP_021025932	UPI000A317C33
MGP_CAROLIEiJ_T0083725	-	3099	-	MGP_CAROLIEiJ_P0083725	911 (aa)	XP_021025932	UPI000A317C33

Gene Model

Click here to download MGP_CAROLIEiJ_G0030809's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0030809's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0030809	Lig4	100	87.267	ENSG00000174405	LIG4	100	87.267	Homo_sapiens
MGP_CAROLIEiJ_G0030809	Lig4	99	64.945	ENSAPOG00000000866	lig4	99	65.055	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0030809	Lig4	100	83.974	ENSAMEG00000019685	LIG4	99	83.974	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0030809	Lig4	99	65.677	ENSACIG00000018309	lig4	99	65.787	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0030809	Lig4	99	64.615	ENSAOCG00000011768	lig4	99	64.725	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0030809	Lig4	99	64.835	ENSAPEG00000017815	lig4	99	64.945	Amphiprion_percula
MGP_CAROLIEiJ_G0030809	Lig4	99	64.978	ENSATEG00000005583	lig4	99	65.088	Anabas_testudineus
MGP_CAROLIEiJ_G0030809	Lig4	97	73.977	ENSAPLG00000001673	LIG4	99	73.977	Anas_platyrhynchos
MGP_CAROLIEiJ_G0030809	Lig4	99	74.640	ENSACAG00000014566	LIG4	99	74.640	Anolis_carolinensis
MGP_CAROLIEiJ_G0030809	Lig4	100	86.937	ENSANAG00000012446	LIG4	100	86.937	Aotus_nancymaae
MGP_CAROLIEiJ_G0030809	Lig4	99	64.912	ENSACLG00000027051	lig4	99	65.127	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0030809	Lig4	99	63.895	ENSAMXG00000008192	lig4	94	63.895	Astyanax_mexicanus
MGP_CAROLIEiJ_G0030809	Lig4	100	85.620	ENSBTAG00000015868	LIG4	100	85.620	Bos_taurus
MGP_CAROLIEiJ_G0030809	Lig4	100	86.059	ENSCJAG00000014689	LIG4	100	86.059	Callithrix_jacchus
MGP_CAROLIEiJ_G0030809	Lig4	100	85.401	ENSCAFG00000006031	LIG4	100	85.401	Canis_familiaris
MGP_CAROLIEiJ_G0030809	Lig4	100	85.401	ENSCAFG00020021230	LIG4	100	85.401	Canis_lupus_dingo
MGP_CAROLIEiJ_G0030809	Lig4	100	85.071	ENSCHIG00000001019	LIG4	100	85.071	Capra_hircus
MGP_CAROLIEiJ_G0030809	Lig4	99	85.493	ENSCAPG00000006284	LIG4	99	85.493	Cavia_aperea
MGP_CAROLIEiJ_G0030809	Lig4	100	85.401	ENSCPOG00000014266	LIG4	100	85.401	Cavia_porcellus
MGP_CAROLIEiJ_G0030809	Lig4	100	85.950	ENSCCAG00000019971	LIG4	100	85.950	Cebus_capucinus
MGP_CAROLIEiJ_G0030809	Lig4	100	86.279	ENSCATG00000021075	LIG4	100	86.279	Cercocebus_atys
MGP_CAROLIEiJ_G0030809	Lig4	100	86.828	ENSCLAG00000003376	LIG4	100	86.828	Chinchilla_lanigera
MGP_CAROLIEiJ_G0030809	Lig4	100	86.498	ENSCSAG00000000211	LIG4	100	86.498	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0030809	Lig4	99	76.932	ENSCPBG00000023291	LIG4	100	76.471	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0030809	Lig4	69	45.212	ENSCING00000009536	-	97	45.212	Ciona_intestinalis
MGP_CAROLIEiJ_G0030809	Lig4	83	45.204	ENSCSAVG00000010336	-	98	45.204	Ciona_savignyi
MGP_CAROLIEiJ_G0030809	Lig4	100	86.608	ENSCANG00000005805	LIG4	100	86.608	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0030809	Lig4	100	92.654	ENSCGRG00001012072	Lig4	100	92.654	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0030809	Lig4	100	92.654	ENSCGRG00000013417	Lig4	100	92.654	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0030809	Lig4	97	65.114	ENSCSEG00000013905	lig4	95	65.114	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0030809	Lig4	99	65.449	ENSCVAG00000007896	lig4	99	65.449	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0030809	Lig4	99	63.747	ENSDARG00000060620	lig4	98	63.747	Danio_rerio
MGP_CAROLIEiJ_G0030809	Lig4	100	84.649	ENSDNOG00000000513	LIG4	100	84.649	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0030809	Lig4	100	86.169	ENSDORG00000027303	Lig4	100	86.169	Dipodomys_ordii
MGP_CAROLIEiJ_G0030809	Lig4	89	31.199	FBgn0030506	Lig4	91	31.199	Drosophila_melanogaster
MGP_CAROLIEiJ_G0030809	Lig4	99	81.264	ENSETEG00000015563	LIG4	100	81.375	Echinops_telfairi
MGP_CAROLIEiJ_G0030809	Lig4	99	44.084	ENSEBUG00000014243	lig4	99	44.084	Eptatretus_burgeri
MGP_CAROLIEiJ_G0030809	Lig4	100	86.169	ENSEASG00005022073	LIG4	100	86.169	Equus_asinus_asinus
MGP_CAROLIEiJ_G0030809	Lig4	100	85.840	ENSECAG00000003257	LIG4	100	85.840	Equus_caballus
MGP_CAROLIEiJ_G0030809	Lig4	99	65.711	ENSELUG00000006787	lig4	99	66.042	Esox_lucius
MGP_CAROLIEiJ_G0030809	Lig4	100	85.620	ENSFCAG00000031985	LIG4	100	85.620	Felis_catus
MGP_CAROLIEiJ_G0030809	Lig4	89	74.662	ENSFALG00000004214	LIG4	98	74.662	Ficedula_albicollis
MGP_CAROLIEiJ_G0030809	Lig4	100	85.071	ENSFDAG00000008973	LIG4	100	85.071	Fukomys_damarensis
MGP_CAROLIEiJ_G0030809	Lig4	99	64.066	ENSFHEG00000007398	lig4	90	64.066	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0030809	Lig4	85	64.341	ENSGMOG00000012843	lig4	99	64.341	Gadus_morhua
MGP_CAROLIEiJ_G0030809	Lig4	100	73.253	ENSGALG00000016854	LIG4	100	73.253	Gallus_gallus
MGP_CAROLIEiJ_G0030809	Lig4	99	64.811	ENSGAFG00000019779	lig4	95	64.356	Gambusia_affinis
MGP_CAROLIEiJ_G0030809	Lig4	99	63.344	ENSGACG00000014135	lig4	99	63.344	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0030809	Lig4	100	87.157	ENSGGOG00000027771	LIG4	100	87.157	Gorilla_gorilla
MGP_CAROLIEiJ_G0030809	Lig4	99	64.803	ENSHBUG00000006245	lig4	99	65.017	Haplochromis_burtoni
MGP_CAROLIEiJ_G0030809	Lig4	100	85.401	ENSHGLG00000000718	LIG4	100	85.401	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0030809	Lig4	100	85.401	ENSHGLG00100003265	LIG4	100	85.401	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0030809	Lig4	99	64.505	ENSHCOG00000012010	lig4	99	64.505	Hippocampus_comes
MGP_CAROLIEiJ_G0030809	Lig4	99	65.385	ENSIPUG00000013748	lig4	99	65.385	Ictalurus_punctatus
MGP_CAROLIEiJ_G0030809	Lig4	100	86.828	ENSSTOG00000024303	LIG4	100	86.828	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0030809	Lig4	100	86.937	ENSJJAG00000006750	Lig4	100	86.937	Jaculus_jaculus
MGP_CAROLIEiJ_G0030809	Lig4	99	64.673	ENSKMAG00000001149	lig4	99	64.673	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0030809	Lig4	91	65.301	ENSLBEG00000014578	lig4	99	65.422	Labrus_bergylta
MGP_CAROLIEiJ_G0030809	Lig4	99	71.350	ENSLACG00000003282	LIG4	99	71.350	Latimeria_chalumnae
MGP_CAROLIEiJ_G0030809	Lig4	99	70.154	ENSLOCG00000008901	lig4	98	70.154	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0030809	Lig4	100	83.352	ENSLAFG00000031152	LIG4	100	83.352	Loxodonta_africana
MGP_CAROLIEiJ_G0030809	Lig4	100	86.389	ENSMFAG00000037235	LIG4	100	86.389	Macaca_fascicularis
MGP_CAROLIEiJ_G0030809	Lig4	100	86.389	ENSMMUG00000008874	LIG4	100	86.389	Macaca_mulatta
MGP_CAROLIEiJ_G0030809	Lig4	100	86.389	ENSMNEG00000023575	LIG4	100	86.389	Macaca_nemestrina
MGP_CAROLIEiJ_G0030809	Lig4	100	86.389	ENSMLEG00000026720	LIG4	100	86.389	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0030809	Lig4	99	65.165	ENSMAMG00000008472	lig4	99	65.275	Mastacembelus_armatus
MGP_CAROLIEiJ_G0030809	Lig4	99	64.912	ENSMZEG00005001855	lig4	99	65.127	Maylandia_zebra
MGP_CAROLIEiJ_G0030809	Lig4	100	73.253	ENSMGAG00000015532	LIG4	100	73.253	Meleagris_gallopavo
MGP_CAROLIEiJ_G0030809	Lig4	100	89.462	ENSMOCG00000019000	Lig4	100	89.462	Microtus_ochrogaster
MGP_CAROLIEiJ_G0030809	Lig4	99	64.009	ENSMMOG00000004390	lig4	99	64.120	Mola_mola
MGP_CAROLIEiJ_G0030809	Lig4	100	80.571	ENSMODG00000025064	LIG4	100	81.031	Monodelphis_domestica
MGP_CAROLIEiJ_G0030809	Lig4	99	64.452	ENSMALG00000008555	lig4	99	64.452	Monopterus_albus
MGP_CAROLIEiJ_G0030809	Lig4	100	98.024	ENSMUSG00000049717	Lig4	100	98.024	Mus_musculus
MGP_CAROLIEiJ_G0030809	Lig4	100	97.256	MGP_PahariEiJ_G0021270	Lig4	100	97.256	Mus_pahari
MGP_CAROLIEiJ_G0030809	Lig4	100	97.914	MGP_SPRETEiJ_G0031917	Lig4	100	97.914	Mus_spretus
MGP_CAROLIEiJ_G0030809	Lig4	100	84.742	ENSMPUG00000018675	LIG4	100	84.742	Mustela_putorius_furo
MGP_CAROLIEiJ_G0030809	Lig4	100	85.840	ENSMLUG00000001267	LIG4	100	85.840	Myotis_lucifugus
MGP_CAROLIEiJ_G0030809	Lig4	100	88.913	ENSNGAG00000013258	Lig4	100	88.913	Nannospalax_galili
MGP_CAROLIEiJ_G0030809	Lig4	99	65.132	ENSNBRG00000021252	lig4	99	65.457	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0030809	Lig4	100	86.608	ENSNLEG00000007888	LIG4	100	86.608	Nomascus_leucogenys
MGP_CAROLIEiJ_G0030809	Lig4	100	84.962	ENSOPRG00000005765	LIG4	100	84.962	Ochotona_princeps
MGP_CAROLIEiJ_G0030809	Lig4	100	84.742	ENSODEG00000019683	LIG4	100	84.742	Octodon_degus
MGP_CAROLIEiJ_G0030809	Lig4	99	65.022	ENSONIG00000011969	lig4	98	65.237	Oreochromis_niloticus
MGP_CAROLIEiJ_G0030809	Lig4	100	86.608	ENSOCUG00000015734	LIG4	100	86.608	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0030809	Lig4	99	63.816	ENSORLG00000004041	lig4	99	63.925	Oryzias_latipes
MGP_CAROLIEiJ_G0030809	Lig4	99	64.364	ENSORLG00020019607	lig4	99	64.474	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0030809	Lig4	99	63.925	ENSORLG00015017754	lig4	99	64.035	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0030809	Lig4	74	68.491	ENSOMEG00000003459	lig4	98	68.491	Oryzias_melastigma
MGP_CAROLIEiJ_G0030809	Lig4	100	86.294	ENSOGAG00000032120	LIG4	99	86.294	Otolemur_garnettii
MGP_CAROLIEiJ_G0030809	Lig4	82	86.577	ENSOARG00000005590	LIG4	98	86.577	Ovis_aries
MGP_CAROLIEiJ_G0030809	Lig4	100	87.047	ENSPPAG00000032998	LIG4	100	87.047	Pan_paniscus
MGP_CAROLIEiJ_G0030809	Lig4	100	86.059	ENSPPRG00000017804	LIG4	100	86.059	Panthera_pardus
MGP_CAROLIEiJ_G0030809	Lig4	100	86.059	ENSPTIG00000010051	LIG4	100	86.059	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0030809	Lig4	100	87.157	ENSPTRG00000006025	LIG4	100	87.157	Pan_troglodytes
MGP_CAROLIEiJ_G0030809	Lig4	100	86.389	ENSPANG00000007562	LIG4	100	86.389	Papio_anubis
MGP_CAROLIEiJ_G0030809	Lig4	99	65.642	ENSPKIG00000011645	lig4	98	65.642	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0030809	Lig4	99	76.400	ENSPSIG00000001504	LIG4	99	76.400	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0030809	Lig4	99	62.000	ENSPMGG00000013486	lig4	99	61.800	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0030809	Lig4	100	91.886	ENSPEMG00000000076	Lig4	100	91.886	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0030809	Lig4	100	81.579	ENSPCIG00000021882	LIG4	100	81.579	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0030809	Lig4	99	64.627	ENSPFOG00000000797	lig4	99	64.176	Poecilia_formosa
MGP_CAROLIEiJ_G0030809	Lig4	99	64.516	ENSPLAG00000001196	lig4	99	64.066	Poecilia_latipinna
MGP_CAROLIEiJ_G0030809	Lig4	99	64.627	ENSPMEG00000021353	lig4	99	64.396	Poecilia_mexicana
MGP_CAROLIEiJ_G0030809	Lig4	99	64.182	ENSPREG00000007323	lig4	99	63.956	Poecilia_reticulata
MGP_CAROLIEiJ_G0030809	Lig4	100	86.718	ENSPPYG00000005540	LIG4	100	86.718	Pongo_abelii
MGP_CAROLIEiJ_G0030809	Lig4	100	86.169	ENSPVAG00000016403	LIG4	100	86.169	Pteropus_vampyrus
MGP_CAROLIEiJ_G0030809	Lig4	99	64.803	ENSPNYG00000009660	lig4	99	65.127	Pundamilia_nyererei
MGP_CAROLIEiJ_G0030809	Lig4	100	64.583	ENSPNAG00000028069	LIG4	100	64.693	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0030809	Lig4	100	64.583	ENSPNAG00000028056	lig4	100	64.693	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0030809	Lig4	100	94.182	ENSRNOG00000014605	Lig4	100	94.182	Rattus_norvegicus
MGP_CAROLIEiJ_G0030809	Lig4	100	85.291	ENSRBIG00000039962	LIG4	100	85.291	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0030809	Lig4	100	86.279	ENSRROG00000006040	LIG4	100	86.279	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0030809	Lig4	100	86.169	ENSSBOG00000019029	LIG4	100	86.169	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0030809	Lig4	100	79.276	ENSSHAG00000009525	LIG4	100	79.276	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0030809	Lig4	100	64.410	ENSSFOG00015012835	lig4	100	64.410	Scleropages_formosus
MGP_CAROLIEiJ_G0030809	Lig4	99	62.569	ENSSMAG00000011267	lig4	99	62.569	Scophthalmus_maximus
MGP_CAROLIEiJ_G0030809	Lig4	99	65.299	ENSSDUG00000010343	lig4	98	65.299	Seriola_dumerili
MGP_CAROLIEiJ_G0030809	Lig4	99	63.677	ENSSLDG00000003239	lig4	99	63.677	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0030809	Lig4	100	80.963	ENSSARG00000006573	LIG4	100	80.963	Sorex_araneus
MGP_CAROLIEiJ_G0030809	Lig4	93	75.948	ENSSPUG00000002444	LIG4	100	75.948	Sphenodon_punctatus
MGP_CAROLIEiJ_G0030809	Lig4	99	64.945	ENSSPAG00000001609	lig4	99	65.055	Stegastes_partitus
MGP_CAROLIEiJ_G0030809	Lig4	99	84.048	ENSSSCG00000009540	LIG4	99	84.048	Sus_scrofa
MGP_CAROLIEiJ_G0030809	Lig4	99	73.626	ENSTGUG00000010795	LIG4	100	73.626	Taeniopygia_guttata
MGP_CAROLIEiJ_G0030809	Lig4	99	65.116	ENSTRUG00000009984	lig4	99	65.116	Takifugu_rubripes
MGP_CAROLIEiJ_G0030809	Lig4	99	64.835	ENSTNIG00000010348	lig4	99	65.055	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0030809	Lig4	100	87.267	ENSTBEG00000017741	LIG4	100	87.267	Tupaia_belangeri
MGP_CAROLIEiJ_G0030809	Lig4	100	86.279	ENSTTRG00000012660	LIG4	100	86.279	Tursiops_truncatus
MGP_CAROLIEiJ_G0030809	Lig4	100	84.193	ENSUAMG00000003773	LIG4	100	84.193	Ursus_americanus
MGP_CAROLIEiJ_G0030809	Lig4	99	70.220	ENSXETG00000002654	lig4	99	70.220	Xenopus_tropicalis
MGP_CAROLIEiJ_G0030809	Lig4	99	64.405	ENSXCOG00000017401	lig4	99	63.956	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0030809	Lig4	99	64.667	ENSXMAG00000015142	lig4	99	64.215	Xiphophorus_maculatus