EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0030848 (Gene tree)
Gene ID: 110300617
Gene Symbol: Upf3a
Alias: 2600001C03Rik|4930546M19Rik|RENT3A|UPF3
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 13163 bases
Position: chr8:10238548-10251710
Accession: 110300617
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0083854	Smg4_UPF3	PF03467.15	2.7e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0083854	-	1369	-	MGP_CAROLIEiJ_P0083854	411 (aa)	XP_021026525	UPI000A31AE5F

Gene Model

Click here to download MGP_CAROLIEiJ_G0030848's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0030848's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0030848	Upf3a	99	69.585	ENSG00000169062	UPF3A	99	72.115	Homo_sapiens
MGP_CAROLIEiJ_G0030848	Upf3a	58	63.600	ENSAPOG00000012775	upf3b	54	63.600	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0030848	Upf3a	92	69.059	ENSAMEG00000004259	UPF3A	88	69.059	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0030848	Upf3a	58	61.600	ENSAOCG00000000706	upf3b	54	61.600	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0030848	Upf3a	58	63.600	ENSAPEG00000005545	upf3b	54	63.600	Amphiprion_percula
MGP_CAROLIEiJ_G0030848	Upf3a	88	57.702	ENSATEG00000005843	upf3a	81	60.000	Anabas_testudineus
MGP_CAROLIEiJ_G0030848	Upf3a	83	66.027	ENSACAG00000001540	UPF3A	88	66.027	Anolis_carolinensis
MGP_CAROLIEiJ_G0030848	Upf3a	99	65.899	ENSANAG00000021713	UPF3A	87	65.783	Aotus_nancymaae
MGP_CAROLIEiJ_G0030848	Upf3a	66	49.117	ENSANAG00000025598	-	74	41.417	Aotus_nancymaae
MGP_CAROLIEiJ_G0030848	Upf3a	88	59.416	ENSAMXG00000002608	upf3a	82	59.416	Astyanax_mexicanus
MGP_CAROLIEiJ_G0030848	Upf3a	51	79.904	ENSBTAG00000047365	-	95	80.861	Bos_taurus
MGP_CAROLIEiJ_G0030848	Upf3a	95	65.942	ENSCJAG00000019102	UPF3A	87	66.265	Callithrix_jacchus
MGP_CAROLIEiJ_G0030848	Upf3a	99	68.736	ENSCAFG00000006504	UPF3A	89	68.750	Canis_familiaris
MGP_CAROLIEiJ_G0030848	Upf3a	99	68.966	ENSCAFG00020014268	UPF3A	87	68.990	Canis_lupus_dingo
MGP_CAROLIEiJ_G0030848	Upf3a	99	66.820	ENSCHIG00000008682	UPF3A	86	67.281	Capra_hircus
MGP_CAROLIEiJ_G0030848	Upf3a	65	45.091	ENSCHIG00000011454	-	74	39.130	Capra_hircus
MGP_CAROLIEiJ_G0030848	Upf3a	73	64.706	ENSTSYG00000001918	UPF3A	87	65.015	Carlito_syrichta
MGP_CAROLIEiJ_G0030848	Upf3a	89	68.814	ENSCPOG00000006824	UPF3A	90	68.814	Cavia_porcellus
MGP_CAROLIEiJ_G0030848	Upf3a	99	68.203	ENSCCAG00000018406	UPF3A	87	68.116	Cebus_capucinus
MGP_CAROLIEiJ_G0030848	Upf3a	99	71.259	ENSCATG00000029733	UPF3A	87	70.896	Cercocebus_atys
MGP_CAROLIEiJ_G0030848	Upf3a	99	70.047	ENSCSAG00000017388	UPF3A	87	69.630	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0030848	Upf3a	99	82.227	ENSCGRG00001017387	Upf3a	99	82.227	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0030848	Upf3a	99	81.754	ENSCGRG00000001468	Upf3a	95	81.931	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0030848	Upf3a	54	57.709	ENSCGRG00000007627	Upf3b	56	62.288	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0030848	Upf3a	55	62.605	ENSCSEG00000002046	upf3b	52	62.400	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0030848	Upf3a	88	57.215	ENSCSEG00000005106	upf3a	82	60.526	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0030848	Upf3a	58	61.600	ENSDARG00000000489	upf3b	54	61.569	Danio_rerio
MGP_CAROLIEiJ_G0030848	Upf3a	86	56.183	ENSDARG00000069297	upf3a	81	58.266	Danio_rerio
MGP_CAROLIEiJ_G0030848	Upf3a	89	69.720	ENSDNOG00000034391	UPF3A	89	69.720	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0030848	Upf3a	96	58.531	ENSETEG00000010110	UPF3A	87	58.852	Echinops_telfairi
MGP_CAROLIEiJ_G0030848	Upf3a	99	68.433	ENSEASG00005021884	UPF3A	85	67.952	Equus_asinus_asinus
MGP_CAROLIEiJ_G0030848	Upf3a	95	67.470	ENSECAG00000017141	UPF3A	85	67.470	Equus_caballus
MGP_CAROLIEiJ_G0030848	Upf3a	83	57.542	ENSELUG00000011050	upf3a	74	60.399	Esox_lucius
MGP_CAROLIEiJ_G0030848	Upf3a	54	64.069	ENSELUG00000020389	upf3b	51	61.417	Esox_lucius
MGP_CAROLIEiJ_G0030848	Upf3a	95	68.269	ENSFCAG00000014602	UPF3A	87	68.029	Felis_catus
MGP_CAROLIEiJ_G0030848	Upf3a	53	57.589	ENSFALG00000001569	UPF3B	85	47.086	Ficedula_albicollis
MGP_CAROLIEiJ_G0030848	Upf3a	75	60.000	ENSGMOG00000019615	upf3a	100	59.531	Gadus_morhua
MGP_CAROLIEiJ_G0030848	Upf3a	58	60.241	ENSGMOG00000001621	upf3b	52	60.241	Gadus_morhua
MGP_CAROLIEiJ_G0030848	Upf3a	57	60.976	ENSGACG00000017435	upf3b	77	65.581	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0030848	Upf3a	75	61.994	ENSGACG00000001972	upf3a	100	62.305	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0030848	Upf3a	90	56.667	ENSGGOG00000041219	-	81	59.375	Gorilla_gorilla
MGP_CAROLIEiJ_G0030848	Upf3a	86	58.777	ENSGGOG00000043074	-	76	59.375	Gorilla_gorilla
MGP_CAROLIEiJ_G0030848	Upf3a	99	70.071	ENSGGOG00000015428	UPF3A	87	69.900	Gorilla_gorilla
MGP_CAROLIEiJ_G0030848	Upf3a	90	71.353	ENSHGLG00000001544	UPF3A	90	71.088	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0030848	Upf3a	90	71.353	ENSHGLG00100013244	UPF3A	90	71.088	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0030848	Upf3a	58	60.976	ENSHCOG00000017004	upf3b	53	60.976	Hippocampus_comes
MGP_CAROLIEiJ_G0030848	Upf3a	57	64.898	ENSIPUG00000019249	upf3b	91	49.254	Ictalurus_punctatus
MGP_CAROLIEiJ_G0030848	Upf3a	88	59.788	ENSIPUG00000023450	upf3a	82	59.788	Ictalurus_punctatus
MGP_CAROLIEiJ_G0030848	Upf3a	56	75.217	ENSSTOG00000030282	-	87	77.295	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0030848	Upf3a	51	83.732	ENSJJAG00000018099	-	98	83.732	Jaculus_jaculus
MGP_CAROLIEiJ_G0030848	Upf3a	91	56.158	ENSKMAG00000004381	upf3a	81	58.915	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0030848	Upf3a	58	59.600	ENSLBEG00000028689	upf3b	54	59.600	Labrus_bergylta
MGP_CAROLIEiJ_G0030848	Upf3a	87	52.561	ENSLBEG00000021570	upf3a	81	53.457	Labrus_bergylta
MGP_CAROLIEiJ_G0030848	Upf3a	58	41.007	ENSLACG00000006645	UPF3A	83	36.422	Latimeria_chalumnae
MGP_CAROLIEiJ_G0030848	Upf3a	86	58.777	ENSLOCG00000002665	upf3a	81	60.372	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0030848	Upf3a	57	64.634	ENSLOCG00000015238	upf3b	57	64.567	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0030848	Upf3a	66	49.502	ENSLAFG00000001267	UPF3B	80	49.215	Loxodonta_africana
MGP_CAROLIEiJ_G0030848	Upf3a	75	60.519	ENSLAFG00000023358	UPF3A	83	59.942	Loxodonta_africana
MGP_CAROLIEiJ_G0030848	Upf3a	99	67.458	ENSMFAG00000045016	UPF3A	87	67.164	Macaca_fascicularis
MGP_CAROLIEiJ_G0030848	Upf3a	99	67.857	ENSMMUG00000007449	UPF3A	86	67.332	Macaca_mulatta
MGP_CAROLIEiJ_G0030848	Upf3a	99	65.509	ENSMNEG00000036402	UPF3A	80	71.088	Macaca_nemestrina
MGP_CAROLIEiJ_G0030848	Upf3a	83	72.521	ENSMLEG00000014726	UPF3A	84	72.521	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0030848	Upf3a	89	58.182	ENSMAMG00000018364	upf3a	79	60.367	Mastacembelus_armatus
MGP_CAROLIEiJ_G0030848	Upf3a	79	65.903	ENSMGAG00000014837	UPF3A	87	65.903	Meleagris_gallopavo
MGP_CAROLIEiJ_G0030848	Upf3a	84	78.933	ENSMOCG00000000550	Upf3a	98	78.933	Microtus_ochrogaster
MGP_CAROLIEiJ_G0030848	Upf3a	84	67.925	ENSMODG00000003159	UPF3A	86	68.293	Monodelphis_domestica
MGP_CAROLIEiJ_G0030848	Upf3a	100	95.735	ENSMUSG00000038398	Upf3a	100	95.735	Mus_musculus
MGP_CAROLIEiJ_G0030848	Upf3a	100	92.654	MGP_PahariEiJ_G0021311	Upf3a	100	92.654	Mus_pahari
MGP_CAROLIEiJ_G0030848	Upf3a	100	95.024	MGP_SPRETEiJ_G0031958	Upf3a	100	95.024	Mus_spretus
MGP_CAROLIEiJ_G0030848	Upf3a	99	68.519	ENSMPUG00000009139	UPF3A	86	68.039	Mustela_putorius_furo
MGP_CAROLIEiJ_G0030848	Upf3a	83	68.464	ENSMLUG00000015905	UPF3A	88	68.464	Myotis_lucifugus
MGP_CAROLIEiJ_G0030848	Upf3a	99	79.147	ENSNGAG00000019314	Upf3a	99	79.147	Nannospalax_galili
MGP_CAROLIEiJ_G0030848	Upf3a	99	69.431	ENSNLEG00000007563	UPF3A	87	68.983	Nomascus_leucogenys
MGP_CAROLIEiJ_G0030848	Upf3a	54	69.778	ENSOPRG00000008846	-	58	68.966	Ochotona_princeps
MGP_CAROLIEiJ_G0030848	Upf3a	53	77.523	ENSODEG00000009176	-	86	77.523	Octodon_degus
MGP_CAROLIEiJ_G0030848	Upf3a	83	56.676	ENSOANG00000006985	-	95	56.676	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0030848	Upf3a	80	65.706	ENSOCUG00000008450	UPF3A	77	63.415	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0030848	Upf3a	87	59.200	ENSORLG00000010911	upf3a	80	58.730	Oryzias_latipes
MGP_CAROLIEiJ_G0030848	Upf3a	57	59.919	ENSORLG00000001026	upf3b	54	59.761	Oryzias_latipes
MGP_CAROLIEiJ_G0030848	Upf3a	57	60.324	ENSORLG00020003758	upf3b	54	60.159	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0030848	Upf3a	86	58.152	ENSORLG00020014317	upf3a	81	57.447	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0030848	Upf3a	57	60.324	ENSORLG00015012954	upf3b	54	60.159	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0030848	Upf3a	87	55.733	ENSOMEG00000014425	upf3a	80	58.871	Oryzias_melastigma
MGP_CAROLIEiJ_G0030848	Upf3a	91	69.620	ENSOGAG00000004788	UPF3A	96	69.620	Otolemur_garnettii
MGP_CAROLIEiJ_G0030848	Upf3a	65	48.387	ENSOARG00000007869	-	69	45.161	Ovis_aries
MGP_CAROLIEiJ_G0030848	Upf3a	97	64.789	ENSOARG00000009004	UPF3A	83	68.182	Ovis_aries
MGP_CAROLIEiJ_G0030848	Upf3a	99	68.591	ENSPPAG00000042267	UPF3A	87	68.434	Pan_paniscus
MGP_CAROLIEiJ_G0030848	Upf3a	95	68.029	ENSPPRG00000025062	UPF3A	87	68.029	Panthera_pardus
MGP_CAROLIEiJ_G0030848	Upf3a	99	69.124	ENSPTRG00000006073	UPF3A	87	68.434	Pan_troglodytes
MGP_CAROLIEiJ_G0030848	Upf3a	83	57.835	ENSPTRG00000041187	-	81	57.418	Pan_troglodytes
MGP_CAROLIEiJ_G0030848	Upf3a	83	58.120	ENSPTRG00000041835	-	81	58.120	Pan_troglodytes
MGP_CAROLIEiJ_G0030848	Upf3a	89	53.985	ENSPTRG00000051640	-	87	53.316	Pan_troglodytes
MGP_CAROLIEiJ_G0030848	Upf3a	99	70.784	ENSPANG00000004346	UPF3A	87	70.398	Papio_anubis
MGP_CAROLIEiJ_G0030848	Upf3a	68	57.239	ENSPKIG00000019226	upf3b	75	68.376	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0030848	Upf3a	83	65.940	ENSPSIG00000007468	UPF3A	89	65.940	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0030848	Upf3a	99	84.360	ENSPEMG00000019968	-	99	84.360	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0030848	Upf3a	80	71.429	ENSPCIG00000019590	-	80	76.630	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0030848	Upf3a	85	45.431	ENSPCIG00000028914	UPF3B	80	45.780	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0030848	Upf3a	99	68.664	ENSPPYG00000005536	UPF3A	87	68.434	Pongo_abelii
MGP_CAROLIEiJ_G0030848	Upf3a	73	66.667	ENSPCAG00000013124	UPF3A	61	67.474	Procavia_capensis
MGP_CAROLIEiJ_G0030848	Upf3a	99	64.286	ENSPVAG00000005656	UPF3A	87	64.976	Pteropus_vampyrus
MGP_CAROLIEiJ_G0030848	Upf3a	88	58.289	ENSPNAG00000019532	upf3a	82	58.133	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0030848	Upf3a	58	63.454	ENSPNAG00000021528	upf3b	72	67.580	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0030848	Upf3a	93	88.354	ENSRNOG00000017397	Upf3a	97	88.354	Rattus_norvegicus
MGP_CAROLIEiJ_G0030848	Upf3a	86	72.527	ENSRBIG00000034007	UPF3A	86	71.164	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0030848	Upf3a	83	73.295	ENSRROG00000012212	UPF3A	76	73.295	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0030848	Upf3a	99	59.908	ENSSBOG00000029989	UPF3A	86	59.518	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0030848	Upf3a	86	66.844	ENSSHAG00000009895	UPF3A	90	67.109	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0030848	Upf3a	84	49.482	ENSSHAG00000008634	UPF3B	79	49.482	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0030848	Upf3a	91	57.292	ENSSFOG00015021851	upf3a	83	57.292	Scleropages_formosus
MGP_CAROLIEiJ_G0030848	Upf3a	60	65.116	ENSSFOG00015005614	upf3b	56	65.116	Scleropages_formosus
MGP_CAROLIEiJ_G0030848	Upf3a	58	62.948	ENSSMAG00000012913	upf3b	69	67.442	Scophthalmus_maximus
MGP_CAROLIEiJ_G0030848	Upf3a	91	51.042	ENSSDUG00000009680	upf3a	80	58.418	Seriola_dumerili
MGP_CAROLIEiJ_G0030848	Upf3a	83	57.808	ENSSARG00000007262	UPF3A	89	54.247	Sorex_araneus
MGP_CAROLIEiJ_G0030848	Upf3a	57	63.115	ENSSPAG00000009989	upf3b	54	63.600	Stegastes_partitus
MGP_CAROLIEiJ_G0030848	Upf3a	99	66.437	ENSSSCG00000024679	UPF3A	83	66.827	Sus_scrofa
MGP_CAROLIEiJ_G0030848	Upf3a	86	66.755	ENSTGUG00000009493	UPF3A	96	66.755	Taeniopygia_guttata
MGP_CAROLIEiJ_G0030848	Upf3a	89	58.530	ENSTRUG00000012730	upf3a	82	58.530	Takifugu_rubripes
MGP_CAROLIEiJ_G0030848	Upf3a	87	51.099	ENSTNIG00000014973	upf3a	95	50.000	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0030848	Upf3a	67	61.873	ENSTBEG00000017186	-	95	61.873	Tupaia_belangeri
MGP_CAROLIEiJ_G0030848	Upf3a	99	58.219	ENSTTRG00000015414	UPF3A	87	58.473	Tursiops_truncatus
MGP_CAROLIEiJ_G0030848	Upf3a	83	68.306	ENSVPAG00000003525	UPF3A	89	68.306	Vicugna_pacos
MGP_CAROLIEiJ_G0030848	Upf3a	99	66.437	ENSVVUG00000013538	UPF3A	84	66.587	Vulpes_vulpes
MGP_CAROLIEiJ_G0030848	Upf3a	86	55.435	ENSXETG00000002572	upf3a	87	55.435	Xenopus_tropicalis
MGP_CAROLIEiJ_G0030848	Upf3a	84	46.438	ENSXETG00000007440	upf3b	71	69.512	Xenopus_tropicalis