EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0030930 (Gene tree)
Gene ID: 110299919
Gene Symbol: Lsm1
Alias: 2810025O06Rik|U6 small nuclear RNA associated
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 18626 bases
Position: chr8:20255322-20273947
Accession: 110299919
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0084067	LSM	PF01423.22	3.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0084067	-	2526	-	MGP_CAROLIEiJ_P0084067	133 (aa)	XP_021025540	UPI0000004031

Gene Model

Click here to download MGP_CAROLIEiJ_G0030930's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0030930's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0030930	Lsm1	65	34.091	MGP_CAROLIEiJ_G0028125	-	92	34.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSG00000175324	LSM1	100	97.744	Homo_sapiens
MGP_CAROLIEiJ_G0030930	Lsm1	100	85.714	ENSAPOG00000010833	lsm1	100	85.714	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSAMEG00000011141	LSM1	100	97.744	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0030930	Lsm1	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0030930	Lsm1	100	85.714	ENSAOCG00000017997	-	100	85.714	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0030930	Lsm1	100	85.714	ENSAOCG00000017096	lsm1	100	85.714	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0030930	Lsm1	100	85.714	ENSAPEG00000011669	lsm1	100	85.714	Amphiprion_percula
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSATEG00000022266	lsm1	100	84.211	Anabas_testudineus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSANAG00000027785	LSM1	100	97.744	Aotus_nancymaae
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSACLG00000011400	lsm1	100	84.211	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSAMXG00000005441	lsm1	100	84.211	Astyanax_mexicanus
MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	ENSBTAG00000001612	LSM1	100	96.992	Bos_taurus
MGP_CAROLIEiJ_G0030930	Lsm1	70	58.065	WBGene00003076	lsm-1	73	58.065	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	ENSCJAG00000048015	LSM1	100	96.992	Callithrix_jacchus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSCAFG00000006113	LSM1	100	97.744	Canis_familiaris
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSCAFG00020001822	LSM1	100	97.744	Canis_lupus_dingo
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSCHIG00000013194	LSM1	100	97.744	Capra_hircus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSTSYG00000010394	LSM1	100	97.744	Carlito_syrichta
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSCPOG00000032671	LSM1	100	97.744	Cavia_porcellus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSCCAG00000037171	LSM1	100	97.744	Cebus_capucinus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSCATG00000020377	LSM1	100	97.744	Cercocebus_atys
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSCLAG00000001137	LSM1	100	97.744	Chinchilla_lanigera
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSCSAG00000015485	LSM1	100	97.744	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	ENSCHOG00000006030	LSM1	100	96.992	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0030930	Lsm1	95	86.614	ENSCPBG00000006569	LSM1	86	86.614	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0030930	Lsm1	99	65.909	ENSCING00000013536	-	99	65.909	Ciona_intestinalis
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSCANG00000019173	LSM1	100	97.744	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0030930	Lsm1	80	81.982	ENSCGRG00001002259	-	97	81.982	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0030930	Lsm1	100	98.496	ENSCGRG00001024560	-	100	98.496	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0030930	Lsm1	80	81.982	ENSCGRG00000013603	-	97	81.982	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0030930	Lsm1	100	98.496	ENSCGRG00000006554	-	100	98.496	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0030930	Lsm1	100	82.707	ENSCSEG00000008319	lsm1	92	82.707	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	ENSCSEG00000010570	lsm1	92	83.459	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	ENSCVAG00000003871	lsm1	100	83.459	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	ENSDARG00000043177	lsm1	100	83.459	Danio_rerio
MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	ENSDNOG00000032911	-	100	96.992	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSDNOG00000046387	-	100	97.744	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0030930	Lsm1	100	91.729	ENSDNOG00000030989	-	100	91.729	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0030930	Lsm1	89	77.311	ENSDNOG00000046620	-	100	77.311	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSDORG00000028172	Lsm1	100	97.744	Dipodomys_ordii
MGP_CAROLIEiJ_G0030930	Lsm1	93	62.903	FBgn0261067	LSm1	91	62.903	Drosophila_melanogaster
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSEASG00005016677	LSM1	100	97.744	Equus_asinus_asinus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSECAG00000010461	LSM1	100	97.744	Equus_caballus
MGP_CAROLIEiJ_G0030930	Lsm1	100	69.173	ENSEEUG00000015181	LSM1	100	69.173	Erinaceus_europaeus
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.962	ENSELUG00000023374	lsm1	100	84.962	Esox_lucius
MGP_CAROLIEiJ_G0030930	Lsm1	100	85.714	ENSELUG00000002322	lsm1	100	85.714	Esox_lucius
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSFCAG00000039335	LSM1	100	97.744	Felis_catus
MGP_CAROLIEiJ_G0030930	Lsm1	89	92.373	ENSFALG00000006723	LSM1	100	92.373	Ficedula_albicollis
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSFDAG00000007658	LSM1	100	97.744	Fukomys_damarensis
MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	ENSFHEG00000009556	lsm1	100	83.459	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	ENSGMOG00000016651	lsm1	98	83.459	Gadus_morhua
MGP_CAROLIEiJ_G0030930	Lsm1	100	90.977	ENSGALG00000003245	LSM1	100	90.977	Gallus_gallus
MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	ENSGAFG00000011355	lsm1	100	83.459	Gambusia_affinis
MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	ENSGACG00000011763	lsm1	98	83.459	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0030930	Lsm1	100	93.233	ENSGAGG00000024065	LSM1	100	93.233	Gopherus_agassizii
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSGGOG00000022658	LSM1	100	97.744	Gorilla_gorilla
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSHBUG00000010897	lsm1	100	84.211	Haplochromis_burtoni
MGP_CAROLIEiJ_G0030930	Lsm1	100	79.699	ENSHGLG00000017574	-	100	79.699	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSHGLG00000005711	LSM1	100	97.744	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSHGLG00100017660	LSM1	100	97.744	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0030930	Lsm1	100	79.699	ENSHGLG00100012152	-	100	79.699	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	ENSHCOG00000017233	lsm1	100	83.459	Hippocampus_comes
MGP_CAROLIEiJ_G0030930	Lsm1	100	82.707	ENSIPUG00000002312	LSM1	100	82.707	Ictalurus_punctatus
MGP_CAROLIEiJ_G0030930	Lsm1	58	100.000	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0030930	Lsm1	100	96.241	ENSJJAG00000014605	-	100	96.241	Jaculus_jaculus
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSKMAG00000003016	lsm1	100	84.211	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSLBEG00000022352	lsm1	100	84.211	Labrus_bergylta
MGP_CAROLIEiJ_G0030930	Lsm1	89	88.136	ENSLACG00000010947	LSM1	98	88.136	Latimeria_chalumnae
MGP_CAROLIEiJ_G0030930	Lsm1	100	92.481	ENSLOCG00000015149	lsm1	100	92.481	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSLAFG00000003534	LSM1	100	97.744	Loxodonta_africana
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSMFAG00000032661	LSM1	100	97.744	Macaca_fascicularis
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSMLEG00000034535	LSM1	100	97.744	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSMAMG00000007464	lsm1	100	84.211	Mastacembelus_armatus
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSMZEG00005010321	lsm1	100	84.211	Maylandia_zebra
MGP_CAROLIEiJ_G0030930	Lsm1	100	90.977	ENSMGAG00000002125	LSM1	100	90.977	Meleagris_gallopavo
MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	ENSMICG00000030726	LSM1	100	96.992	Microcebus_murinus
MGP_CAROLIEiJ_G0030930	Lsm1	100	98.496	ENSMOCG00000022817	Lsm1	100	98.496	Microtus_ochrogaster
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.962	ENSMMOG00000015466	lsm1	100	84.962	Mola_mola
MGP_CAROLIEiJ_G0030930	Lsm1	100	95.489	ENSMODG00000010732	-	100	95.489	Monodelphis_domestica
MGP_CAROLIEiJ_G0030930	Lsm1	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
MGP_CAROLIEiJ_G0030930	Lsm1	100	100.000	ENSMUSG00000037296	Lsm1	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0030930	Lsm1	100	100.000	MGP_PahariEiJ_G0021400	Lsm1	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0030930	Lsm1	100	100.000	MGP_SPRETEiJ_G0032049	Lsm1	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	ENSMPUG00000009883	LSM1	100	96.992	Mustela_putorius_furo
MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	ENSMLUG00000003734	LSM1	100	96.992	Myotis_lucifugus
MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	ENSNGAG00000003753	Lsm1	100	96.992	Nannospalax_galili
MGP_CAROLIEiJ_G0030930	Lsm1	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSNLEG00000029390	LSM1	100	97.744	Nomascus_leucogenys
MGP_CAROLIEiJ_G0030930	Lsm1	100	95.489	ENSMEUG00000014077	LSM1	100	95.489	Notamacropus_eugenii
MGP_CAROLIEiJ_G0030930	Lsm1	88	93.162	ENSOPRG00000000333	LSM1	100	93.162	Ochotona_princeps
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSODEG00000004834	LSM1	100	97.744	Octodon_degus
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSONIG00000010782	lsm1	100	84.211	Oreochromis_niloticus
MGP_CAROLIEiJ_G0030930	Lsm1	100	94.737	ENSOANG00000003256	LSM1	100	94.737	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSOCUG00000015399	LSM1	100	97.744	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.962	ENSORLG00000030288	lsm1	100	84.962	Oryzias_latipes
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.962	ENSORLG00020003941	lsm1	100	84.962	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	ENSORLG00020006213	-	86	83.459	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.962	ENSORLG00015018350	lsm1	100	84.962	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSOMEG00000012454	lsm1	100	84.211	Oryzias_melastigma
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSOGAG00000015161	LSM1	100	97.744	Otolemur_garnettii
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSOARG00000001317	LSM1	100	97.744	Ovis_aries
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSPPAG00000032279	LSM1	100	97.744	Pan_paniscus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSPPRG00000014172	-	100	97.744	Panthera_pardus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSPTIG00000010289	LSM1	100	97.744	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSPTRG00000020169	LSM1	100	97.744	Pan_troglodytes
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSPANG00000008814	LSM1	100	97.744	Papio_anubis
MGP_CAROLIEiJ_G0030930	Lsm1	100	89.474	ENSPKIG00000001839	lsm1	100	89.474	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0030930	Lsm1	100	82.707	ENSPKIG00000019409	LSM1	99	82.707	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0030930	Lsm1	98	86.923	ENSPSIG00000012563	LSM1	99	86.923	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0030930	Lsm1	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0030930	Lsm1	85	77.876	ENSPMAG00000002671	lsm1	100	77.876	Petromyzon_marinus
MGP_CAROLIEiJ_G0030930	Lsm1	100	93.985	ENSPCIG00000008880	LSM1	100	93.985	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	ENSPFOG00000016029	lsm1	100	83.459	Poecilia_formosa
MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	ENSPLAG00000007879	lsm1	100	83.459	Poecilia_latipinna
MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	ENSPMEG00000023550	lsm1	100	83.459	Poecilia_mexicana
MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	ENSPREG00000009574	lsm1	100	83.459	Poecilia_reticulata
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSPPYG00000018521	LSM1	100	97.744	Pongo_abelii
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSPCOG00000020901	-	100	97.744	Propithecus_coquereli
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSPVAG00000006016	LSM1	100	97.744	Pteropus_vampyrus
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSPNYG00000018067	lsm1	100	84.211	Pundamilia_nyererei
MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	ENSPNAG00000013707	lsm1	100	83.459	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	ENSRNOG00000015375	Lsm1	100	96.992	Rattus_norvegicus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSRBIG00000027449	LSM1	100	97.744	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSRROG00000036074	LSM1	100	97.744	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0030930	Lsm1	87	42.149	YJL124C	LSM1	70	42.149	Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0030930	Lsm1	100	95.489	ENSSHAG00000017260	LSM1	100	95.489	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0030930	Lsm1	100	90.977	ENSSFOG00015019528	lsm1	100	90.977	Scleropages_formosus
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSSMAG00000004930	lsm1	100	84.211	Scophthalmus_maximus
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSSDUG00000021823	lsm1	100	84.211	Seriola_dumerili
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSSLDG00000012154	lsm1	100	84.211	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0030930	Lsm1	100	93.233	ENSSPUG00000014878	LSM1	100	93.233	Sphenodon_punctatus
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.962	ENSSPAG00000020548	lsm1	100	84.962	Stegastes_partitus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSSSCG00000039058	LSM1	100	97.744	Sus_scrofa
MGP_CAROLIEiJ_G0030930	Lsm1	100	92.481	ENSTGUG00000004793	LSM1	100	92.481	Taeniopygia_guttata
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSTRUG00000025239	lsm1	100	84.211	Takifugu_rubripes
MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	ENSTNIG00000004055	lsm1	100	84.211	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0030930	Lsm1	88	96.581	ENSTBEG00000015884	LSM1	100	96.581	Tupaia_belangeri
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSTTRG00000004482	LSM1	100	97.744	Tursiops_truncatus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSUAMG00000004103	LSM1	100	97.744	Ursus_americanus
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSUMAG00000009132	LSM1	100	97.744	Ursus_maritimus
MGP_CAROLIEiJ_G0030930	Lsm1	58	98.701	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	ENSVVUG00000020191	LSM1	100	97.744	Vulpes_vulpes
MGP_CAROLIEiJ_G0030930	Lsm1	65	69.767	ENSVVUG00000014880	-	91	69.767	Vulpes_vulpes
MGP_CAROLIEiJ_G0030930	Lsm1	100	90.511	ENSXETG00000009004	lsm1	100	90.511	Xenopus_tropicalis
MGP_CAROLIEiJ_G0030930	Lsm1	100	82.707	ENSXCOG00000015631	lsm1	100	82.707	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0030930	Lsm1	100	82.707	ENSXMAG00000026637	lsm1	100	82.707	Xiphophorus_maculatus