EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
MGP_CAROLIEiJ_G0031142 (Gene tree)
Gene ID
110299629
Gene Symbol
Upf1
Alias
B430202H16Rik|PNORF-1|Rent1
Full Name
UPF1%2C RNA helicase and ATPase
Gene Type
protein_coding
Species
Mus_caroli
Status
putative
Strand
Minus strand
Length
21762 bases
Position
chr8:62541213-62562974
Accession
110299629
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_CAROLIEiJ_P0084765UPF1_Zn_bindPF09416.101.1e-7411
MGP_CAROLIEiJ_P0084765ResIIIPF04851.154.5e-0511
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_CAROLIEiJ_T0084766-3429-MGP_CAROLIEiJ_P00847661113 (aa)XP_021025018UPI0000020D63
MGP_CAROLIEiJ_T0084765-4566XM_021169358MGP_CAROLIEiJ_P00847651124 (aa)XP_021025017UPI00001BD7DC
Gene Model
Click here to download MGP_CAROLIEiJ_G0031142's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0031142's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_CAROLIEiJ_G0031142Upf110098.494ENSG00000005007UPF110098.494Homo_sapiens
MGP_CAROLIEiJ_G0031142Upf110091.332ENSAPOG00000023773upf110091.510Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0031142Upf110092.384ENSAPOG00000010916-10092.384Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0031142Upf110097.961ENSAMEG00000011474UPF110097.961Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0031142Upf110091.071ENSACIG00000019949upf110091.510Amphilophus_citrinellus
MGP_CAROLIEiJ_G0031142Upf19294.244ENSACIG00000010985-10094.341Amphilophus_citrinellus
MGP_CAROLIEiJ_G0031142Upf110092.384ENSAOCG00000006352-10092.384Amphiprion_ocellaris
MGP_CAROLIEiJ_G0031142Upf110090.844ENSAOCG00000018519upf110091.327Amphiprion_ocellaris
MGP_CAROLIEiJ_G0031142Upf110092.384ENSAPEG00000006292-10092.384Amphiprion_percula
MGP_CAROLIEiJ_G0031142Upf110090.844ENSAPEG00000016344upf110091.327Amphiprion_percula
MGP_CAROLIEiJ_G0031142Upf110090.018ENSATEG00000017867upf110090.724Anabas_testudineus
MGP_CAROLIEiJ_G0031142Upf110092.473ENSATEG00000016606-10092.473Anabas_testudineus
MGP_CAROLIEiJ_G0031142Upf19497.526ENSAPLG00000009175UPF19997.526Anas_platyrhynchos
MGP_CAROLIEiJ_G0031142Upf19695.841ENSANAG00000024107UPF19895.841Aotus_nancymaae
MGP_CAROLIEiJ_G0031142Upf110090.804ENSACLG00000007181upf110091.242Astatotilapia_calliptera
MGP_CAROLIEiJ_G0031142Upf110092.115ENSACLG00000022630-10092.025Astatotilapia_calliptera
MGP_CAROLIEiJ_G0031142Upf110092.748ENSAMXG00000042187upf110093.196Astyanax_mexicanus
MGP_CAROLIEiJ_G0031142Upf110098.580ENSBTAG00000020922UPF110098.580Bos_taurus
MGP_CAROLIEiJ_G0031142Upf18950.988WBGene00004880smg-29948.245Caenorhabditis_elegans
MGP_CAROLIEiJ_G0031142Upf110098.494ENSCJAG00000019627UPF110098.494Callithrix_jacchus
MGP_CAROLIEiJ_G0031142Upf110098.496ENSCAFG00000014578UPF110098.496Canis_familiaris
MGP_CAROLIEiJ_G0031142Upf110098.481ENSCAFG00020012347UPF110098.481Canis_lupus_dingo
MGP_CAROLIEiJ_G0031142Upf110098.566ENSCHIG00000011018UPF110098.566Capra_hircus
MGP_CAROLIEiJ_G0031142Upf19697.398ENSTSYG00000008877UPF19997.398Carlito_syrichta
MGP_CAROLIEiJ_G0031142Upf19498.004ENSCAPG00000005758UPF19598.004Cavia_aperea
MGP_CAROLIEiJ_G0031142Upf110096.181ENSCPOG00000025463UPF110096.181Cavia_porcellus
MGP_CAROLIEiJ_G0031142Upf110098.665ENSCCAG00000032175UPF110098.665Cebus_capucinus
MGP_CAROLIEiJ_G0031142Upf19597.657ENSCATG00000040306UPF19897.657Cercocebus_atys
MGP_CAROLIEiJ_G0031142Upf19697.870ENSCLAG00000004037UPF110099.049Chinchilla_lanigera
MGP_CAROLIEiJ_G0031142Upf110098.390ENSCSAG00000005276UPF110098.390Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0031142Upf110096.509ENSCPBG00000012513UPF110096.509Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0031142Upf17877.702ENSCING00000021399-9978.687Ciona_intestinalis
MGP_CAROLIEiJ_G0031142Upf19972.202ENSCSAVG00000006533-9972.202Ciona_savignyi
MGP_CAROLIEiJ_G0031142Upf19598.131ENSCANG00000029819UPF19998.131Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0031142Upf110099.820ENSCGRG00001021067Upf110099.820Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0031142Upf19598.784ENSCGRG00000013480Upf19998.784Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0031142Upf110086.380ENSCSEG00000017239upf110086.470Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0031142Upf110092.377ENSCSEG00000016159-10092.287Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0031142Upf110092.025ENSCVAG00000010561upf110091.935Cyprinodon_variegatus
MGP_CAROLIEiJ_G0031142Upf110092.569ENSDARG00000016302upf110093.017Danio_rerio
MGP_CAROLIEiJ_G0031142Upf19595.607ENSDORG00000009984Upf19695.607Dipodomys_ordii
MGP_CAROLIEiJ_G0031142Upf18570.894FBgn0030354Upf19961.379Drosophila_melanogaster
MGP_CAROLIEiJ_G0031142Upf15586.601ENSEBUG00000010069upf19686.438Eptatretus_burgeri
MGP_CAROLIEiJ_G0031142Upf110098.746ENSEASG00005006549UPF110098.746Equus_asinus_asinus
MGP_CAROLIEiJ_G0031142Upf110098.746ENSECAG00000010639UPF110098.746Equus_caballus
MGP_CAROLIEiJ_G0031142Upf110091.006ENSELUG00000012916-10091.459Esox_lucius
MGP_CAROLIEiJ_G0031142Upf110090.285ENSELUG00000020917upf110090.553Esox_lucius
MGP_CAROLIEiJ_G0031142Upf110098.407ENSFCAG00000009757UPF110098.407Felis_catus
MGP_CAROLIEiJ_G0031142Upf19696.276ENSFALG00000009312UPF19996.276Ficedula_albicollis
MGP_CAROLIEiJ_G0031142Upf19796.875ENSFDAG00000014816UPF110098.954Fukomys_damarensis
MGP_CAROLIEiJ_G0031142Upf18594.975ENSFHEG00000016276-9694.975Fundulus_heteroclitus
MGP_CAROLIEiJ_G0031142Upf110088.622ENSFHEG00000006428upf110088.622Fundulus_heteroclitus
MGP_CAROLIEiJ_G0031142Upf110091.038ENSGMOG00000007541upf110091.837Gadus_morhua
MGP_CAROLIEiJ_G0031142Upf110097.048ENSGALG00000003220UPF110097.048Gallus_gallus
MGP_CAROLIEiJ_G0031142Upf16294.957ENSGAFG00000015443-8594.957Gambusia_affinis
MGP_CAROLIEiJ_G0031142Upf110091.480ENSGAFG00000004831upf110091.839Gambusia_affinis
MGP_CAROLIEiJ_G0031142Upf110097.038ENSGAGG00000022217UPF110097.038Gopherus_agassizii
MGP_CAROLIEiJ_G0031142Upf19498.944ENSGGOG00000002608UPF19998.944Gorilla_gorilla
MGP_CAROLIEiJ_G0031142Upf19085.057ENSHBUG00000014694upf110085.057Haplochromis_burtoni
MGP_CAROLIEiJ_G0031142Upf187100.000ENSHBUG00000008939upf195100.000Haplochromis_burtoni
MGP_CAROLIEiJ_G0031142Upf110098.140ENSHGLG00000010900UPF110098.140Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0031142Upf19695.032ENSHGLG00100005904UPF19995.032Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0031142Upf110091.480ENSHCOG00000008918upf110093.327Hippocampus_comes
MGP_CAROLIEiJ_G0031142Upf110093.196ENSIPUG00000005108UPF110093.554Ictalurus_punctatus
MGP_CAROLIEiJ_G0031142Upf110098.843ENSSTOG00000009196UPF110098.843Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0031142Upf110099.288ENSJJAG00000023151Upf110099.288Jaculus_jaculus
MGP_CAROLIEiJ_G0031142Upf110092.384ENSKMAG00000004962upf110092.294Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0031142Upf110092.122ENSLBEG00000027848-10092.122Labrus_bergylta
MGP_CAROLIEiJ_G0031142Upf110089.381ENSLBEG00000014862upf110090.442Labrus_bergylta
MGP_CAROLIEiJ_G0031142Upf16396.270ENSLACG00000008482UPF110096.270Latimeria_chalumnae
MGP_CAROLIEiJ_G0031142Upf110094.709ENSLOCG00000002072upf110094.709Lepisosteus_oculatus
MGP_CAROLIEiJ_G0031142Upf110098.053ENSLAFG00000014963UPF110098.053Loxodonta_africana
MGP_CAROLIEiJ_G0031142Upf110098.665ENSMFAG00000037748UPF110098.665Macaca_fascicularis
MGP_CAROLIEiJ_G0031142Upf110098.843ENSMMUG00000023286UPF110098.843Macaca_mulatta
MGP_CAROLIEiJ_G0031142Upf110098.665ENSMNEG00000000046UPF110098.665Macaca_nemestrina
MGP_CAROLIEiJ_G0031142Upf19498.954ENSMLEG00000028404UPF110098.954Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0031142Upf110089.753ENSMAMG00000006229upf110090.724Mastacembelus_armatus
MGP_CAROLIEiJ_G0031142Upf110091.495ENSMAMG00000006231-10091.943Mastacembelus_armatus
MGP_CAROLIEiJ_G0031142Upf110092.115ENSMZEG00005016386-10092.025Maylandia_zebra
MGP_CAROLIEiJ_G0031142Upf110089.850ENSMZEG00005003489upf110090.949Maylandia_zebra
MGP_CAROLIEiJ_G0031142Upf19497.053ENSMGAG00000004745UPF110097.053Meleagris_gallopavo
MGP_CAROLIEiJ_G0031142Upf19598.145ENSMAUG00000011398Upf19798.145Mesocricetus_auratus
MGP_CAROLIEiJ_G0031142Upf110098.390ENSMICG00000001659UPF110098.390Microcebus_murinus
MGP_CAROLIEiJ_G0031142Upf110099.644ENSMOCG00000005699Upf110099.644Microtus_ochrogaster
MGP_CAROLIEiJ_G0031142Upf19491.168ENSMMOG00000007537-9992.226Mola_mola
MGP_CAROLIEiJ_G0031142Upf110090.575ENSMMOG00000007881upf110090.942Mola_mola
MGP_CAROLIEiJ_G0031142Upf110097.264ENSMODG00000003689UPF110097.264Monodelphis_domestica
MGP_CAROLIEiJ_G0031142Upf110091.169ENSMALG00000018100-10091.169Monopterus_albus
MGP_CAROLIEiJ_G0031142Upf110090.844ENSMALG00000000144upf110091.023Monopterus_albus
MGP_CAROLIEiJ_G0031142Upf1100100.000ENSMUSG00000058301Upf1100100.000Mus_musculus
MGP_CAROLIEiJ_G0031142Upf1100100.000MGP_PahariEiJ_G0021607Upf1100100.000Mus_pahari
MGP_CAROLIEiJ_G0031142Upf1100100.000MGP_SPRETEiJ_G0032260Upf1100100.000Mus_spretus
MGP_CAROLIEiJ_G0031142Upf110098.481ENSMPUG00000015516UPF110098.481Mustela_putorius_furo
MGP_CAROLIEiJ_G0031142Upf19998.117ENSMLUG00000012122UPF19998.117Myotis_lucifugus
MGP_CAROLIEiJ_G0031142Upf110099.201ENSNGAG00000024107Upf110099.201Nannospalax_galili
MGP_CAROLIEiJ_G0031142Upf110089.110ENSNBRG00000022069-10093.197Neolamprologus_brichardi
MGP_CAROLIEiJ_G0031142Upf110089.107ENSNBRG00000000670upf110089.544Neolamprologus_brichardi
MGP_CAROLIEiJ_G0031142Upf19493.156ENSNLEG00000006062UPF110093.156Nomascus_leucogenys
MGP_CAROLIEiJ_G0031142Upf18393.137ENSMEUG00000014146-8393.137Notamacropus_eugenii
MGP_CAROLIEiJ_G0031142Upf18998.785ENSOPRG00000014018UPF110091.162Ochotona_princeps
MGP_CAROLIEiJ_G0031142Upf110097.598ENSODEG00000012426UPF110097.598Octodon_degus
MGP_CAROLIEiJ_G0031142Upf110090.115ENSONIG00000010452upf110091.216Oreochromis_niloticus
MGP_CAROLIEiJ_G0031142Upf110092.204ENSONIG00000012729-10092.115Oreochromis_niloticus
MGP_CAROLIEiJ_G0031142Upf110097.163ENSOANG00000004568UPF110097.163Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0031142Upf110092.294ENSORLG00000008453upf110092.294Oryzias_latipes
MGP_CAROLIEiJ_G0031142Upf110092.122ENSORLG00020014758upf110092.122Oryzias_latipes_hni
MGP_CAROLIEiJ_G0031142Upf110092.122ENSORLG00015010165upf110092.122Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0031142Upf110092.384ENSOMEG00000003665upf110092.294Oryzias_melastigma
MGP_CAROLIEiJ_G0031142Upf110098.569ENSOGAG00000012866UPF110098.569Otolemur_garnettii
MGP_CAROLIEiJ_G0031142Upf19696.593ENSOARG00000010739UPF110096.593Ovis_aries
MGP_CAROLIEiJ_G0031142Upf19598.131ENSPPAG00000043884UPF19798.131Pan_paniscus
MGP_CAROLIEiJ_G0031142Upf110098.407ENSPPRG00000023470UPF110098.407Panthera_pardus
MGP_CAROLIEiJ_G0031142Upf19397.115ENSPTIG00000010159UPF19997.115Panthera_tigris_altaica
MGP_CAROLIEiJ_G0031142Upf110098.665ENSPTRG00000010721UPF110098.665Pan_troglodytes
MGP_CAROLIEiJ_G0031142Upf110098.665ENSPANG00000008847UPF110098.665Papio_anubis
MGP_CAROLIEiJ_G0031142Upf19194.706ENSPKIG00000006069upf19794.608Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0031142Upf16997.124ENSPSIG00000009491UPF110097.124Pelodiscus_sinensis
MGP_CAROLIEiJ_G0031142Upf110089.187ENSPMGG00000017327upf110089.295Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0031142Upf110099.822ENSPEMG00000001085Upf110099.822Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0031142Upf110087.299ENSPMAG00000001206upf110086.732Petromyzon_marinus
MGP_CAROLIEiJ_G0031142Upf110097.853ENSPCIG00000006156UPF110097.853Phascolarctos_cinereus
MGP_CAROLIEiJ_G0031142Upf110091.570ENSPLAG00000016232-10091.928Poecilia_latipinna
MGP_CAROLIEiJ_G0031142Upf110089.333ENSPLAG00000018155-10089.244Poecilia_latipinna
MGP_CAROLIEiJ_G0031142Upf110091.487ENSPMEG00000016319-10091.846Poecilia_mexicana
MGP_CAROLIEiJ_G0031142Upf110089.803ENSPMEG00000011443-10089.714Poecilia_mexicana
MGP_CAROLIEiJ_G0031142Upf110089.628ENSPREG00000009940upf110089.628Poecilia_reticulata
MGP_CAROLIEiJ_G0031142Upf110091.390ENSPREG00000011247-10091.749Poecilia_reticulata
MGP_CAROLIEiJ_G0031142Upf110093.534ENSPPYG00000009752UPF110093.534Pongo_abelii
MGP_CAROLIEiJ_G0031142Upf176100.000ENSPCAG00000012962UPF176100.000Procavia_capensis
MGP_CAROLIEiJ_G0031142Upf110098.843ENSPCOG00000023813UPF110098.843Propithecus_coquereli
MGP_CAROLIEiJ_G0031142Upf169100.000ENSPVAG00000003183UPF169100.000Pteropus_vampyrus
MGP_CAROLIEiJ_G0031142Upf110092.115ENSPNYG00000016731-10092.025Pundamilia_nyererei
MGP_CAROLIEiJ_G0031142Upf110089.850ENSPNYG00000003694upf110090.949Pundamilia_nyererei
MGP_CAROLIEiJ_G0031142Upf110092.748ENSPNAG00000025614upf110093.196Pygocentrus_nattereri
MGP_CAROLIEiJ_G0031142Upf110099.911ENSRNOG00000020134Upf110099.911Rattus_norvegicus
MGP_CAROLIEiJ_G0031142Upf19595.794ENSRBIG00000013894UPF19898.686Rhinopithecus_bieti
MGP_CAROLIEiJ_G0031142Upf19598.131ENSRROG00000040935UPF19998.131Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0031142Upf17655.962YMR080CNAM78655.962Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0031142Upf19697.220ENSSBOG00000023632UPF19997.220Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0031142Upf19498.196ENSSHAG00000010499UPF110098.196Sarcophilus_harrisii
MGP_CAROLIEiJ_G0031142Upf110094.803ENSSFOG00015021095upf19996.734Scleropages_formosus
MGP_CAROLIEiJ_G0031142Upf110089.027ENSSMAG00000005055upf110089.744Scophthalmus_maximus
MGP_CAROLIEiJ_G0031142Upf110092.211ENSSMAG00000021018-10092.211Scophthalmus_maximus
MGP_CAROLIEiJ_G0031142Upf110092.480ENSSDUG00000009629-10092.480Seriola_dumerili
MGP_CAROLIEiJ_G0031142Upf110090.018ENSSDUG00000013320upf110090.813Seriola_dumerili
MGP_CAROLIEiJ_G0031142Upf110092.480ENSSLDG00000006878-10092.480Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0031142Upf110090.820ENSSLDG00000020868upf110091.103Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0031142Upf110096.858ENSSPUG00000010538UPF110096.858Sphenodon_punctatus
MGP_CAROLIEiJ_G0031142Upf110092.466ENSSPAG00000011521-10092.377Stegastes_partitus
MGP_CAROLIEiJ_G0031142Upf110089.238ENSSPAG00000000003upf110089.276Stegastes_partitus
MGP_CAROLIEiJ_G0031142Upf110098.492ENSSSCG00000039301UPF110098.492Sus_scrofa
MGP_CAROLIEiJ_G0031142Upf18389.468ENSTGUG00000001057UPF110095.273Taeniopygia_guttata
MGP_CAROLIEiJ_G0031142Upf110090.868ENSTRUG00000005131-10091.390Takifugu_rubripes
MGP_CAROLIEiJ_G0031142Upf110090.575ENSTRUG00000000150upf110090.575Takifugu_rubripes
MGP_CAROLIEiJ_G0031142Upf110094.444ENSTTRG00000011544UPF110094.265Tursiops_truncatus
MGP_CAROLIEiJ_G0031142Upf110098.391ENSUAMG00000007093UPF110098.391Ursus_americanus
MGP_CAROLIEiJ_G0031142Upf19598.129ENSUMAG00000006652UPF19999.066Ursus_maritimus
MGP_CAROLIEiJ_G0031142Upf110098.481ENSVVUG00000007797UPF110098.481Vulpes_vulpes
MGP_CAROLIEiJ_G0031142Upf110081.938ENSXETG00000013602upf110081.850Xenopus_tropicalis
MGP_CAROLIEiJ_G0031142Upf19789.508ENSXCOG00000015275-9689.415Xiphophorus_couchianus
MGP_CAROLIEiJ_G0031142Upf19393.598ENSXCOG00000005764-10094.083Xiphophorus_couchianus
MGP_CAROLIEiJ_G0031142Upf110089.767ENSXMAG00000001703-10089.677Xiphophorus_maculatus
MGP_CAROLIEiJ_G0031142Upf110091.308ENSXMAG00000002540-10091.667Xiphophorus_maculatus

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