EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0031158 (Gene tree)
Gene ID: 110300133
Gene Symbol: Lsm4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 5802 bases
Position: chr8:62891856-62897657
Accession: 110300133
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0084820	LSM	PF01423.22	1.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0084820	-	925	XM_021170197	MGP_CAROLIEiJ_P0084820	138 (aa)	XP_021025856	UPI00000E8891
MGP_CAROLIEiJ_T0084821	-	163	-	MGP_CAROLIEiJ_P0084821	46 (aa)	-	UPI0003F487EA
MGP_CAROLIEiJ_T0084822	-	374	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0031158's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0031158's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0031158	Lsm4	65	31.522	MGP_CAROLIEiJ_G0015441	Snrpd3	56	34.722
MGP_CAROLIEiJ_G0031158	Lsm4	70	35.644	MGP_CAROLIEiJ_G0021490	Lsm2	92	34.831

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSG00000130520	LSM4	100	96.403	Homo_sapiens
MGP_CAROLIEiJ_G0031158	Lsm4	71	93.939	ENSAPOG00000005643	lsm4	58	95.455	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0031158	Lsm4	99	96.377	ENSAMEG00000011162	LSM4	95	96.377	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0031158	Lsm4	99	75.524	ENSAOCG00000006414	lsm4	59	95.455	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0031158	Lsm4	99	72.917	ENSAPEG00000006238	lsm4	59	95.455	Amphiprion_percula
MGP_CAROLIEiJ_G0031158	Lsm4	71	93.939	ENSATEG00000016559	lsm4	58	95.455	Anabas_testudineus
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSANAG00000034659	LSM4	100	96.403	Aotus_nancymaae
MGP_CAROLIEiJ_G0031158	Lsm4	79	81.452	ENSACLG00000022738	lsm4	60	95.455	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0031158	Lsm4	99	81.884	ENSAMXG00000016932	lsm4	62	95.455	Astyanax_mexicanus
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSBTAG00000008578	LSM4	100	96.403	Bos_taurus
MGP_CAROLIEiJ_G0031158	Lsm4	60	73.494	WBGene00003078	lsm-4	67	73.494	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSCJAG00000014171	LSM4	100	96.403	Callithrix_jacchus
MGP_CAROLIEiJ_G0031158	Lsm4	99	96.377	ENSCAFG00000014900	LSM4	90	96.377	Canis_familiaris
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSCAFG00020012137	LSM4	100	96.403	Canis_lupus_dingo
MGP_CAROLIEiJ_G0031158	Lsm4	99	96.377	ENSCHIG00000010928	LSM4	91	96.377	Capra_hircus
MGP_CAROLIEiJ_G0031158	Lsm4	100	97.122	ENSTSYG00000030906	LSM4	100	97.122	Carlito_syrichta
MGP_CAROLIEiJ_G0031158	Lsm4	100	95.683	ENSCAPG00000014140	LSM4	100	95.683	Cavia_aperea
MGP_CAROLIEiJ_G0031158	Lsm4	100	95.683	ENSCPOG00000024117	LSM4	100	95.683	Cavia_porcellus
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSCCAG00000036308	LSM4	100	96.403	Cebus_capucinus
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSCATG00000029311	LSM4	100	96.403	Cercocebus_atys
MGP_CAROLIEiJ_G0031158	Lsm4	100	92.806	ENSCLAG00000010828	LSM4	100	92.806	Chinchilla_lanigera
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSCSAG00000005370	LSM4	100	96.403	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0031158	Lsm4	100	76.087	ENSCPBG00000012925	LSM4	100	76.087	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0031158	Lsm4	60	92.771	ENSCING00000007519	-	69	90.909	Ciona_intestinalis
MGP_CAROLIEiJ_G0031158	Lsm4	60	93.976	ENSCSAVG00000008596	-	70	92.045	Ciona_savignyi
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSCANG00000043686	LSM4	100	96.403	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0031158	Lsm4	100	99.275	ENSCGRG00001014436	Lsm4	100	99.275	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0031158	Lsm4	100	98.551	ENSCGRG00000009398	Lsm4	100	99.270	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0031158	Lsm4	70	93.814	ENSCSEG00000016127	lsm4	62	95.455	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0031158	Lsm4	88	73.171	ENSCVAG00000021828	lsm4	56	94.521	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0031158	Lsm4	99	76.087	ENSCVAG00000010601	lsm4	62	95.455	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0031158	Lsm4	97	76.596	ENSDARG00000023852	lsm4	62	95.455	Danio_rerio
MGP_CAROLIEiJ_G0031158	Lsm4	100	95.683	ENSDORG00000024225	Lsm4	100	95.683	Dipodomys_ordii
MGP_CAROLIEiJ_G0031158	Lsm4	64	87.778	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
MGP_CAROLIEiJ_G0031158	Lsm4	89	94.355	ENSETEG00000007762	-	100	94.355	Echinops_telfairi
MGP_CAROLIEiJ_G0031158	Lsm4	54	93.333	ENSEBUG00000003639	-	50	93.333	Eptatretus_burgeri
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSECAG00000010141	LSM4	57	96.403	Equus_caballus
MGP_CAROLIEiJ_G0031158	Lsm4	95	82.090	ENSELUG00000012821	lsm4	66	95.402	Esox_lucius
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSFCAG00000040580	LSM4	100	96.403	Felis_catus
MGP_CAROLIEiJ_G0031158	Lsm4	99	75.182	ENSFALG00000009478	LSM4	99	75.182	Ficedula_albicollis
MGP_CAROLIEiJ_G0031158	Lsm4	99	93.478	ENSFDAG00000010124	LSM4	100	93.478	Fukomys_damarensis
MGP_CAROLIEiJ_G0031158	Lsm4	69	93.750	ENSGMOG00000007729	lsm4	59	95.402	Gadus_morhua
MGP_CAROLIEiJ_G0031158	Lsm4	100	75.362	ENSGALG00000003385	LSM4	100	75.362	Gallus_gallus
MGP_CAROLIEiJ_G0031158	Lsm4	79	81.452	ENSGAFG00000004903	lsm4	55	91.781	Gambusia_affinis
MGP_CAROLIEiJ_G0031158	Lsm4	68	95.789	ENSGACG00000008140	lsm4	59	95.455	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0031158	Lsm4	100	76.087	ENSGAGG00000017812	LSM4	100	76.087	Gopherus_agassizii
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSGGOG00000012914	-	100	96.403	Gorilla_gorilla
MGP_CAROLIEiJ_G0031158	Lsm4	100	93.525	ENSHGLG00000006568	LSM4	100	93.525	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0031158	Lsm4	66	96.739	ENSHGLG00100007894	LSM4	99	96.739	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0031158	Lsm4	99	75.182	ENSHCOG00000008819	lsm4	62	95.455	Hippocampus_comes
MGP_CAROLIEiJ_G0031158	Lsm4	99	81.884	ENSIPUG00000005368	Lsm4	62	95.455	Ictalurus_punctatus
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSSTOG00000016494	LSM4	100	96.403	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0031158	Lsm4	100	97.842	ENSJJAG00000017420	Lsm4	100	97.842	Jaculus_jaculus
MGP_CAROLIEiJ_G0031158	Lsm4	61	95.238	ENSKMAG00000005073	lsm4	61	94.318	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0031158	Lsm4	71	93.939	ENSLBEG00000027930	lsm4	59	95.455	Labrus_bergylta
MGP_CAROLIEiJ_G0031158	Lsm4	99	81.022	ENSLACG00000015861	LSM4	98	81.022	Latimeria_chalumnae
MGP_CAROLIEiJ_G0031158	Lsm4	93	82.946	ENSLOCG00000002025	lsm4	62	95.455	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0031158	Lsm4	99	94.928	ENSLAFG00000017459	LSM4	99	94.928	Loxodonta_africana
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSMFAG00000031194	LSM4	100	96.403	Macaca_fascicularis
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSMMUG00000004405	LSM4	100	96.403	Macaca_mulatta
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSMNEG00000042899	LSM4	100	96.403	Macaca_nemestrina
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSMLEG00000027948	LSM4	100	96.403	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0031158	Lsm4	99	77.536	ENSMAMG00000006190	lsm4	62	95.455	Mastacembelus_armatus
MGP_CAROLIEiJ_G0031158	Lsm4	79	81.452	ENSMZEG00005016420	lsm4	60	95.455	Maylandia_zebra
MGP_CAROLIEiJ_G0031158	Lsm4	99	80.576	ENSMGAG00000004976	LSM4	99	87.681	Meleagris_gallopavo
MGP_CAROLIEiJ_G0031158	Lsm4	100	95.683	ENSMICG00000000222	LSM4	100	95.683	Microcebus_murinus
MGP_CAROLIEiJ_G0031158	Lsm4	100	100.000	ENSMOCG00000020861	Lsm4	100	100.000	Microtus_ochrogaster
MGP_CAROLIEiJ_G0031158	Lsm4	89	93.548	ENSMODG00000015044	-	100	93.548	Monodelphis_domestica
MGP_CAROLIEiJ_G0031158	Lsm4	99	73.913	ENSMALG00000018159	lsm4	62	94.318	Monopterus_albus
MGP_CAROLIEiJ_G0031158	Lsm4	100	100.000	ENSMUSG00000031848	Lsm4	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0031158	Lsm4	100	100.000	MGP_PahariEiJ_G0021623	Lsm4	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0031158	Lsm4	100	100.000	MGP_SPRETEiJ_G0032276	Lsm4	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSMPUG00000015589	LSM4	100	96.403	Mustela_putorius_furo
MGP_CAROLIEiJ_G0031158	Lsm4	99	96.377	ENSMLUG00000004010	LSM4	99	96.377	Myotis_lucifugus
MGP_CAROLIEiJ_G0031158	Lsm4	100	99.281	ENSNGAG00000008644	Lsm4	100	99.281	Nannospalax_galili
MGP_CAROLIEiJ_G0031158	Lsm4	70	93.878	ENSNBRG00000022150	lsm4	54	95.402	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0031158	Lsm4	89	89.516	ENSMEUG00000013229	LSM4	100	89.516	Notamacropus_eugenii
MGP_CAROLIEiJ_G0031158	Lsm4	89	90.323	ENSOPRG00000005575	LSM4	100	80.645	Ochotona_princeps
MGP_CAROLIEiJ_G0031158	Lsm4	100	93.525	ENSODEG00000020549	-	100	93.525	Octodon_degus
MGP_CAROLIEiJ_G0031158	Lsm4	100	71.014	ENSODEG00000011712	-	100	71.014	Octodon_degus
MGP_CAROLIEiJ_G0031158	Lsm4	100	84.058	ENSODEG00000004519	-	100	73.913	Octodon_degus
MGP_CAROLIEiJ_G0031158	Lsm4	79	81.452	ENSONIG00000012724	lsm4	60	95.455	Oreochromis_niloticus
MGP_CAROLIEiJ_G0031158	Lsm4	62	90.110	ENSOANG00000007434	LSM4	78	90.110	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0031158	Lsm4	99	77.305	ENSORLG00000008391	lsm4	97	69.784	Oryzias_latipes
MGP_CAROLIEiJ_G0031158	Lsm4	99	70.861	ENSORLG00020014829	lsm4	97	69.784	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0031158	Lsm4	99	77.305	ENSORLG00015010205	lsm4	97	69.784	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0031158	Lsm4	100	80.576	ENSOMEG00000003606	lsm4	61	94.318	Oryzias_melastigma
MGP_CAROLIEiJ_G0031158	Lsm4	71	94.949	ENSOGAG00000027992	LSM4	60	96.552	Otolemur_garnettii
MGP_CAROLIEiJ_G0031158	Lsm4	86	95.798	ENSOARG00000012553	LSM4	94	95.798	Ovis_aries
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSPPAG00000044045	-	100	96.403	Pan_paniscus
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSPPRG00000018264	LSM4	100	96.403	Panthera_pardus
MGP_CAROLIEiJ_G0031158	Lsm4	99	96.377	ENSPTIG00000006306	LSM4	100	96.377	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSPTRG00000031470	LSM4	100	96.403	Pan_troglodytes
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSPANG00000014399	LSM4	100	96.403	Papio_anubis
MGP_CAROLIEiJ_G0031158	Lsm4	99	80.292	ENSPKIG00000006154	lsm4	62	95.455	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0031158	Lsm4	99	75.182	ENSPSIG00000012358	LSM4	100	75.182	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0031158	Lsm4	100	100.000	ENSPEMG00000001358	Lsm4	100	100.000	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0031158	Lsm4	99	77.857	ENSPLAG00000016267	lsm4	62	95.455	Poecilia_latipinna
MGP_CAROLIEiJ_G0031158	Lsm4	98	76.259	ENSPMEG00000016378	lsm4	63	95.402	Poecilia_mexicana
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSPPYG00000009736	LSM4	100	96.403	Pongo_abelii
MGP_CAROLIEiJ_G0031158	Lsm4	89	94.355	ENSPCAG00000008513	LSM4	100	94.355	Procavia_capensis
MGP_CAROLIEiJ_G0031158	Lsm4	100	95.683	ENSPCOG00000019837	LSM4	100	95.683	Propithecus_coquereli
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSPVAG00000015383	LSM4	100	96.403	Pteropus_vampyrus
MGP_CAROLIEiJ_G0031158	Lsm4	79	81.452	ENSPNYG00000016794	lsm4	60	95.455	Pundamilia_nyererei
MGP_CAROLIEiJ_G0031158	Lsm4	96	80.597	ENSPNAG00000016598	lsm4	65	95.402	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0031158	Lsm4	100	100.000	ENSRNOG00000019572	Lsm4	100	100.000	Rattus_norvegicus
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSRBIG00000024717	LSM4	100	96.403	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSRROG00000045706	LSM4	100	96.403	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0031158	Lsm4	90	96.000	ENSSBOG00000022455	LSM4	100	96.000	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0031158	Lsm4	100	94.245	ENSSHAG00000011559	LSM4	100	94.245	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0031158	Lsm4	99	78.832	ENSSFOG00015021067	lsm4	62	95.455	Scleropages_formosus
MGP_CAROLIEiJ_G0031158	Lsm4	99	69.718	ENSSMAG00000021020	lsm4	95	69.718	Scophthalmus_maximus
MGP_CAROLIEiJ_G0031158	Lsm4	71	93.939	ENSSDUG00000009588	lsm4	53	95.455	Seriola_dumerili
MGP_CAROLIEiJ_G0031158	Lsm4	71	93.939	ENSSLDG00000006827	lsm4	52	95.455	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0031158	Lsm4	62	95.402	ENSSPUG00000010166	LSM4	56	95.402	Sphenodon_punctatus
MGP_CAROLIEiJ_G0031158	Lsm4	71	93.939	ENSSPAG00000011615	lsm4	58	95.455	Stegastes_partitus
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSSSCG00000034314	LSM4	100	96.403	Sus_scrofa
MGP_CAROLIEiJ_G0031158	Lsm4	79	79.839	ENSTRUG00000021737	lsm4	62	94.318	Takifugu_rubripes
MGP_CAROLIEiJ_G0031158	Lsm4	99	79.286	ENSTNIG00000010191	lsm4	61	95.455	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0031158	Lsm4	99	96.377	ENSUAMG00000000665	LSM4	99	96.377	Ursus_americanus
MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	ENSUMAG00000009013	LSM4	100	96.403	Ursus_maritimus
MGP_CAROLIEiJ_G0031158	Lsm4	99	96.377	ENSVVUG00000008136	LSM4	71	96.377	Vulpes_vulpes
MGP_CAROLIEiJ_G0031158	Lsm4	100	90.647	ENSXETG00000024933	lsm4	100	87.770	Xenopus_tropicalis