EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0031319 (Gene tree)
Gene ID: 110300872
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 14265 bases
Position: chr8:76301990-76316254
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0085342	RNase_HII	PF01351.18	1.5e-24	1	1
MGP_CAROLIEiJ_P0085339	RNase_HII	PF01351.18	7.1e-24	1	1
MGP_CAROLIEiJ_P0085340	RNase_HII	PF01351.18	1.2e-21	1	1
MGP_CAROLIEiJ_P0085341	RNase_HII	PF01351.18	1.6e-21	1	1
MGP_CAROLIEiJ_P0085344	RNase_HII	PF01351.18	2.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0085339	-	1839	-	MGP_CAROLIEiJ_P0085339	228 (aa)	-	-
MGP_CAROLIEiJ_T0085342	-	1373	-	MGP_CAROLIEiJ_P0085342	248 (aa)	-	-
MGP_CAROLIEiJ_T0085343	-	338	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0085340	-	2767	-	MGP_CAROLIEiJ_P0085340	225 (aa)	-	-
MGP_CAROLIEiJ_T0085341	-	802	-	MGP_CAROLIEiJ_P0085341	188 (aa)	-	-
MGP_CAROLIEiJ_T0085346	-	765	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0085344	-	716	-	MGP_CAROLIEiJ_P0085344	54 (aa)	-	UPI0000F2242D
MGP_CAROLIEiJ_T0085345	-	423	-	MGP_CAROLIEiJ_P0085345	11 (aa)	-	UPI0003F48748

Gene Model

Click here to download MGP_CAROLIEiJ_G0031319's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0031319's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSG00000104889	RNASEH2A	99	94.286	Homo_sapiens
MGP_CAROLIEiJ_G0031319	-	99	66.187	ENSAPOG00000004101	rnaseh2a	76	66.187	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0031319	-	100	92.593	ENSAMEG00000012323	RNASEH2A	79	89.209	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSACIG00000002658	rnaseh2a	100	44.961	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0031319	-	99	63.309	ENSAOCG00000009217	rnaseh2a	100	40.895	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0031319	-	99	63.309	ENSAPEG00000022937	rnaseh2a	100	40.895	Amphiprion_percula
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSATEG00000000908	rnaseh2a	100	43.450	Anabas_testudineus
MGP_CAROLIEiJ_G0031319	-	99	66.906	ENSACAG00000003338	RNASEH2A	100	46.844	Anolis_carolinensis
MGP_CAROLIEiJ_G0031319	-	100	62.069	ENSANAG00000037932	RNASEH2A	100	53.608	Aotus_nancymaae
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSACLG00000009169	rnaseh2a	100	42.994	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0031319	-	99	53.237	ENSAMXG00000000436	rnaseh2a	100	36.928	Astyanax_mexicanus
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSBTAG00000009661	RNASEH2A	99	90.647	Bos_taurus
MGP_CAROLIEiJ_G0031319	-	86	57.391	WBGene00004383	rnh-2	72	57.391	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0031319	-	100	96.296	ENSCJAG00000004873	RNASEH2A	75	91.367	Callithrix_jacchus
MGP_CAROLIEiJ_G0031319	-	100	92.593	ENSCAFG00000017159	RNASEH2A	100	87.050	Canis_familiaris
MGP_CAROLIEiJ_G0031319	-	100	92.593	ENSCAFG00020005190	RNASEH2A	60	87.050	Canis_lupus_dingo
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSCHIG00000014460	RNASEH2A	99	90.647	Capra_hircus
MGP_CAROLIEiJ_G0031319	-	100	96.296	ENSTSYG00000025418	RNASEH2A	99	92.086	Carlito_syrichta
MGP_CAROLIEiJ_G0031319	-	51	86.667	ENSCAPG00000003411	RNASEH2A	60	86.667	Cavia_aperea
MGP_CAROLIEiJ_G0031319	-	98	96.226	ENSCPOG00000038877	RNASEH2A	99	90.647	Cavia_porcellus
MGP_CAROLIEiJ_G0031319	-	100	96.296	ENSCCAG00000030453	RNASEH2A	75	92.806	Cebus_capucinus
MGP_CAROLIEiJ_G0031319	-	100	96.296	ENSCATG00000029609	RNASEH2A	75	92.086	Cercocebus_atys
MGP_CAROLIEiJ_G0031319	-	98	94.340	ENSCLAG00000014930	RNASEH2A	99	92.086	Chinchilla_lanigera
MGP_CAROLIEiJ_G0031319	-	100	94.444	ENSCSAG00000006567	RNASEH2A	75	91.367	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0031319	-	100	72.222	ENSCPBG00000023909	RNASEH2A	100	44.771	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0031319	-	94	51.678	ENSCING00000006190	-	95	39.236	Ciona_intestinalis
MGP_CAROLIEiJ_G0031319	-	100	49.640	ENSCSAVG00000010904	-	100	37.667	Ciona_savignyi
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSCANG00000027433	RNASEH2A	75	92.086	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0031319	-	100	96.403	ENSCGRG00001005021	Rnaseh2a	79	96.403	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0031319	-	100	96.403	ENSCGRG00000016602	Rnaseh2a	79	96.403	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSCSEG00000009842	rnaseh2a	100	44.156	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0031319	-	96	65.385	ENSCVAG00000021203	rnaseh2a	99	45.035	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSDARG00000018891	rnaseh2a	100	63.380	Danio_rerio
MGP_CAROLIEiJ_G0031319	-	100	92.593	ENSDNOG00000036532	RNASEH2A	99	90.526	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0031319	-	100	92.086	ENSDORG00000009008	Rnaseh2a	79	92.086	Dipodomys_ordii
MGP_CAROLIEiJ_G0031319	-	87	61.702	FBgn0031252	CG13690	85	34.000	Drosophila_melanogaster
MGP_CAROLIEiJ_G0031319	-	85	69.565	ENSEBUG00000003380	rnaseh2a	87	42.289	Eptatretus_burgeri
MGP_CAROLIEiJ_G0031319	-	100	92.593	ENSEASG00005004118	RNASEH2A	67	89.209	Equus_asinus_asinus
MGP_CAROLIEiJ_G0031319	-	100	92.593	ENSECAG00000007013	RNASEH2A	75	89.209	Equus_caballus
MGP_CAROLIEiJ_G0031319	-	100	87.037	ENSEEUG00000008222	RNASEH2A	100	62.626	Erinaceus_europaeus
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSELUG00000023079	rnaseh2a	84	63.309	Esox_lucius
MGP_CAROLIEiJ_G0031319	-	100	90.741	ENSFCAG00000000474	RNASEH2A	100	87.050	Felis_catus
MGP_CAROLIEiJ_G0031319	-	100	90.647	ENSFDAG00000003595	RNASEH2A	99	90.647	Fukomys_damarensis
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSFHEG00000007682	rnaseh2a	100	44.194	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0031319	-	99	64.029	ENSGMOG00000005650	rnaseh2a	100	40.764	Gadus_morhua
MGP_CAROLIEiJ_G0031319	-	98	71.698	ENSGALG00000052002	RNASEH2A	57	62.590	Gallus_gallus
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSGAFG00000009624	rnaseh2a	99	43.137	Gambusia_affinis
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSGACG00000016019	rnaseh2a	100	42.765	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0031319	-	100	74.074	ENSGAGG00000013859	RNASEH2A	100	45.098	Gopherus_agassizii
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSGGOG00000005846	RNASEH2A	75	93.525	Gorilla_gorilla
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSHBUG00000005267	rnaseh2a	96	44.014	Haplochromis_burtoni
MGP_CAROLIEiJ_G0031319	-	98	92.453	ENSHGLG00000018801	RNASEH2A	99	89.209	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0031319	-	98	92.453	ENSHGLG00100015773	RNASEH2A	99	89.209	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0031319	-	100	64.815	ENSHCOG00000016593	rnaseh2a	100	41.613	Hippocampus_comes
MGP_CAROLIEiJ_G0031319	-	100	70.370	ENSIPUG00000024299	rnaseh2a	100	43.590	Ictalurus_punctatus
MGP_CAROLIEiJ_G0031319	-	100	92.593	ENSSTOG00000006224	RNASEH2A	99	87.770	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0031319	-	99	92.086	ENSJJAG00000017547	Rnaseh2a	75	92.086	Jaculus_jaculus
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSKMAG00000019829	rnaseh2a	100	43.871	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0031319	-	99	66.187	ENSLBEG00000020494	rnaseh2a	100	42.994	Labrus_bergylta
MGP_CAROLIEiJ_G0031319	-	100	74.074	ENSLACG00000007789	RNASEH2A	99	53.441	Latimeria_chalumnae
MGP_CAROLIEiJ_G0031319	-	100	70.370	ENSLOCG00000007890	rnaseh2a	99	43.831	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0031319	-	100	94.444	ENSLAFG00000015571	RNASEH2A	99	89.928	Loxodonta_africana
MGP_CAROLIEiJ_G0031319	-	100	96.296	ENSMFAG00000002011	RNASEH2A	75	92.086	Macaca_fascicularis
MGP_CAROLIEiJ_G0031319	-	100	96.296	ENSMMUG00000005690	RNASEH2A	75	92.086	Macaca_mulatta
MGP_CAROLIEiJ_G0031319	-	100	96.296	ENSMNEG00000033054	RNASEH2A	75	92.086	Macaca_nemestrina
MGP_CAROLIEiJ_G0031319	-	100	96.296	ENSMLEG00000043654	RNASEH2A	75	92.086	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSMAMG00000003062	rnaseh2a	98	44.014	Mastacembelus_armatus
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSMZEG00005023857	rnaseh2a	100	42.357	Maylandia_zebra
MGP_CAROLIEiJ_G0031319	-	100	94.444	ENSMAUG00000008286	-	100	94.203	Mesocricetus_auratus
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSMICG00000016430	RNASEH2A	75	92.086	Microcebus_murinus
MGP_CAROLIEiJ_G0031319	-	100	100.000	ENSMOCG00000017408	Rnaseh2a	79	95.683	Microtus_ochrogaster
MGP_CAROLIEiJ_G0031319	-	100	62.963	ENSMMOG00000008447	rnaseh2a	100	44.574	Mola_mola
MGP_CAROLIEiJ_G0031319	-	100	75.926	ENSMODG00000006997	RNASEH2A	76	76.259	Monodelphis_domestica
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSMALG00000021607	rnaseh2a	100	44.409	Monopterus_albus
MGP_CAROLIEiJ_G0031319	-	100	100.000	ENSMUSG00000052926	Rnaseh2a	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0031319	-	100	100.000	MGP_PahariEiJ_G0022924	Rnaseh2a	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0031319	-	100	100.000	MGP_SPRETEiJ_G0032438	Rnaseh2a	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0031319	-	100	90.741	ENSMPUG00000004586	RNASEH2A	79	88.489	Mustela_putorius_furo
MGP_CAROLIEiJ_G0031319	-	100	92.593	ENSMLUG00000012723	RNASEH2A	79	91.367	Myotis_lucifugus
MGP_CAROLIEiJ_G0031319	-	100	94.444	ENSNGAG00000017988	Rnaseh2a	85	84.076	Nannospalax_galili
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSNBRG00000018731	rnaseh2a	100	42.994	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSNLEG00000012806	RNASEH2A	81	86.538	Nomascus_leucogenys
MGP_CAROLIEiJ_G0031319	-	100	77.778	ENSMEUG00000006001	RNASEH2A	81	65.341	Notamacropus_eugenii
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSOPRG00000004811	RNASEH2A	68	73.394	Ochotona_princeps
MGP_CAROLIEiJ_G0031319	-	98	94.340	ENSODEG00000009772	RNASEH2A	99	90.647	Octodon_degus
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSONIG00000018033	rnaseh2a	99	41.853	Oreochromis_niloticus
MGP_CAROLIEiJ_G0031319	-	99	61.151	ENSOANG00000009079	RNASEH2A	100	43.234	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSORLG00000004042	rnaseh2a	100	42.765	Oryzias_latipes
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSORLG00020009483	rnaseh2a	100	42.765	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSORLG00015007548	rnaseh2a	100	43.269	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSOMEG00000016454	rnaseh2a	100	41.158	Oryzias_melastigma
MGP_CAROLIEiJ_G0031319	-	100	90.741	ENSOGAG00000012214	RNASEH2A	100	60.133	Otolemur_garnettii
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSOARG00000010721	RNASEH2A	99	90.647	Ovis_aries
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSPPAG00000028092	RNASEH2A	75	93.525	Pan_paniscus
MGP_CAROLIEiJ_G0031319	-	100	90.741	ENSPPRG00000010585	RNASEH2A	79	87.050	Panthera_pardus
MGP_CAROLIEiJ_G0031319	-	100	87.037	ENSPTIG00000013366	RNASEH2A	100	61.794	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSPTRG00000010542	RNASEH2A	75	92.806	Pan_troglodytes
MGP_CAROLIEiJ_G0031319	-	100	96.296	ENSPANG00000034495	RNASEH2A	75	92.086	Papio_anubis
MGP_CAROLIEiJ_G0031319	-	99	66.906	ENSPKIG00000009756	rnaseh2a	100	44.194	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0031319	-	53	64.706	ENSPSIG00000012039	RNASEH2A	100	35.678	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0031319	-	100	62.963	ENSPMGG00000023392	rnaseh2a	100	43.798	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0031319	-	100	96.296	ENSPEMG00000018009	Rnaseh2a	100	71.382	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0031319	-	96	78.846	ENSPMAG00000009060	rnaseh2a	98	42.951	Petromyzon_marinus
MGP_CAROLIEiJ_G0031319	-	100	75.926	ENSPCIG00000014119	RNASEH2A	100	48.734	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSPFOG00000012627	rnaseh2a	100	41.801	Poecilia_formosa
MGP_CAROLIEiJ_G0031319	-	56	57.500	ENSPLAG00000018723	-	57	57.500	Poecilia_latipinna
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSPLAG00000015901	rnaseh2a	100	44.961	Poecilia_latipinna
MGP_CAROLIEiJ_G0031319	-	56	57.500	ENSPMEG00000009032	-	59	57.500	Poecilia_mexicana
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSPMEG00000000647	rnaseh2a	100	44.961	Poecilia_mexicana
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSPREG00000015015	rnaseh2a	100	43.243	Poecilia_reticulata
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSPPYG00000009608	RNASEH2A	75	93.525	Pongo_abelii
MGP_CAROLIEiJ_G0031319	-	100	92.593	ENSPCAG00000015319	RNASEH2A	79	89.928	Procavia_capensis
MGP_CAROLIEiJ_G0031319	-	100	96.296	ENSPCOG00000003686	RNASEH2A	75	91.367	Propithecus_coquereli
MGP_CAROLIEiJ_G0031319	-	100	96.296	ENSPVAG00000014703	RNASEH2A	65	90.741	Pteropus_vampyrus
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSPNYG00000023986	rnaseh2a	100	42.540	Pundamilia_nyererei
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSPNAG00000021017	rnaseh2a	100	43.408	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0031319	-	100	100.000	ENSRNOG00000003504	Rnaseh2a	79	96.403	Rattus_norvegicus
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSRBIG00000023554	RNASEH2A	75	92.806	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSRROG00000043799	RNASEH2A	75	92.806	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSSBOG00000033164	RNASEH2A	75	94.245	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0031319	-	100	72.222	ENSSHAG00000015552	RNASEH2A	100	48.243	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0031319	-	100	70.370	ENSSFOG00015009692	rnaseh2a	100	43.831	Scleropages_formosus
MGP_CAROLIEiJ_G0031319	-	99	66.906	ENSSMAG00000013986	rnaseh2a	76	66.906	Scophthalmus_maximus
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSSDUG00000005280	rnaseh2a	100	43.098	Seriola_dumerili
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSSLDG00000023766	rnaseh2a	100	43.131	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0031319	-	100	61.111	ENSSPAG00000012769	rnaseh2a	100	41.534	Stegastes_partitus
MGP_CAROLIEiJ_G0031319	-	100	98.148	ENSSSCG00000013737	RNASEH2A	100	92.086	Sus_scrofa
MGP_CAROLIEiJ_G0031319	-	100	64.815	ENSTRUG00000000049	rnaseh2a	100	41.720	Takifugu_rubripes
MGP_CAROLIEiJ_G0031319	-	100	66.667	ENSTNIG00000004533	rnaseh2a	73	67.939	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0031319	-	100	94.444	ENSTTRG00000003592	RNASEH2A	65	90.647	Tursiops_truncatus
MGP_CAROLIEiJ_G0031319	-	100	92.593	ENSUAMG00000019593	RNASEH2A	99	91.429	Ursus_americanus
MGP_CAROLIEiJ_G0031319	-	100	94.444	ENSUMAG00000006254	-	73	60.684	Ursus_maritimus
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSXETG00000004762	rnaseh2a	98	44.079	Xenopus_tropicalis
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSXCOG00000013485	rnaseh2a	99	62.857	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0031319	-	100	68.519	ENSXMAG00000006953	rnaseh2a	100	43.871	Xiphophorus_maculatus