EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0031364 (Gene tree)
Gene ID: 110299809
Gene Symbol: Chd9
Alias: 1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013
Full Name: chromodomain helicase DNA binding protein 9
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 221379 bases
Position: chr8:82365407-82586785
Accession: 110299809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0085486	ResIII	PF04851.15	2.9e-06	1	1
MGP_CAROLIEiJ_P0085487	ResIII	PF04851.15	3e-06	1	1
MGP_CAROLIEiJ_P0085487	BRK	PF07533.16	3.1e-30	1	2
MGP_CAROLIEiJ_P0085487	BRK	PF07533.16	3.1e-30	2	2
MGP_CAROLIEiJ_P0085486	BRK	PF07533.16	3.1e-30	1	2
MGP_CAROLIEiJ_P0085486	BRK	PF07533.16	3.1e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0085487	-	11534	-	MGP_CAROLIEiJ_P0085487	2872 (aa)	-	-
MGP_CAROLIEiJ_T0085486	-	11582	XM_021169679	MGP_CAROLIEiJ_P0085486	2888 (aa)	XP_021025338	UPI000A3163DC

Gene Model

Click here to download MGP_CAROLIEiJ_G0031364's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0031364's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0031364	Chd9	84	71.157	MGP_CAROLIEiJ_G0025797	Chd7	94	54.516
MGP_CAROLIEiJ_G0031364	Chd9	72	62.169	MGP_CAROLIEiJ_G0024604	Chd6	87	68.786
MGP_CAROLIEiJ_G0031364	Chd9	67	68.546	MGP_CAROLIEiJ_G0019237	Chd8	80	68.782

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0031364	Chd9	99	90.455	ENSG00000177200	CHD9	100	100.000	Homo_sapiens
MGP_CAROLIEiJ_G0031364	Chd9	84	70.247	ENSAPOG00000023034	chd9	67	74.466	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0031364	Chd9	99	90.465	ENSAMEG00000016232	CHD9	99	90.811	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0031364	Chd9	79	69.015	ENSACIG00000004097	chd9	73	61.710	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0031364	Chd9	84	70.598	ENSAOCG00000005487	chd9	67	74.598	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0031364	Chd9	84	70.501	ENSAPEG00000009859	chd9	96	61.552	Amphiprion_percula
MGP_CAROLIEiJ_G0031364	Chd9	84	70.518	ENSATEG00000002748	chd9	73	63.872	Anabas_testudineus
MGP_CAROLIEiJ_G0031364	Chd9	99	81.339	ENSAPLG00000002826	CHD9	74	83.302	Anas_platyrhynchos
MGP_CAROLIEiJ_G0031364	Chd9	99	78.400	ENSACAG00000016150	CHD9	98	78.922	Anolis_carolinensis
MGP_CAROLIEiJ_G0031364	Chd9	99	90.837	ENSANAG00000015630	CHD9	98	94.505	Aotus_nancymaae
MGP_CAROLIEiJ_G0031364	Chd9	90	62.951	ENSAMXG00000005652	chd9	69	73.576	Astyanax_mexicanus
MGP_CAROLIEiJ_G0031364	Chd9	99	89.872	ENSBTAG00000002287	CHD9	99	89.906	Bos_taurus
MGP_CAROLIEiJ_G0031364	Chd9	99	90.652	ENSCJAG00000001573	CHD9	98	94.872	Callithrix_jacchus
MGP_CAROLIEiJ_G0031364	Chd9	99	90.701	ENSCAFG00000009699	CHD9	99	90.874	Canis_familiaris
MGP_CAROLIEiJ_G0031364	Chd9	99	90.701	ENSCAFG00020002879	CHD9	98	95.238	Canis_lupus_dingo
MGP_CAROLIEiJ_G0031364	Chd9	99	90.389	ENSTSYG00000007693	CHD9	98	94.872	Carlito_syrichta
MGP_CAROLIEiJ_G0031364	Chd9	81	73.847	ENSCAPG00000011604	CHD9	81	74.602	Cavia_aperea
MGP_CAROLIEiJ_G0031364	Chd9	99	87.191	ENSCPOG00000036544	CHD9	99	87.609	Cavia_porcellus
MGP_CAROLIEiJ_G0031364	Chd9	99	90.506	ENSCCAG00000036178	CHD9	98	94.139	Cebus_capucinus
MGP_CAROLIEiJ_G0031364	Chd9	99	90.408	ENSCATG00000036753	CHD9	98	94.872	Cercocebus_atys
MGP_CAROLIEiJ_G0031364	Chd9	99	90.427	ENSCLAG00000007137	CHD9	99	94.913	Chinchilla_lanigera
MGP_CAROLIEiJ_G0031364	Chd9	99	90.395	ENSCSAG00000005311	CHD9	99	90.811	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0031364	Chd9	74	96.154	ENSCHOG00000003935	CHD9	76	96.154	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0031364	Chd9	92	90.679	ENSCPBG00000012459	CHD9	99	90.679	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0031364	Chd9	99	90.496	ENSCANG00000030349	CHD9	98	94.872	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0031364	Chd9	99	93.693	ENSCGRG00001016150	Chd9	99	93.136	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0031364	Chd9	99	93.693	ENSCGRG00000012850	Chd9	99	97.110	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0031364	Chd9	79	67.768	ENSCSEG00000009209	chd9	66	72.286	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0031364	Chd9	84	70.274	ENSCVAG00000016195	chd9	97	61.250	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0031364	Chd9	81	68.447	ENSDARG00000074498	chd9	99	67.340	Danio_rerio
MGP_CAROLIEiJ_G0031364	Chd9	80	91.209	ENSDNOG00000006045	CHD9	99	91.509	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0031364	Chd9	69	90.371	ENSDORG00000008523	-	99	91.658	Dipodomys_ordii
MGP_CAROLIEiJ_G0031364	Chd9	93	95.789	ENSETEG00000009565	CHD9	93	95.789	Echinops_telfairi
MGP_CAROLIEiJ_G0031364	Chd9	99	90.430	ENSEASG00005014832	CHD9	99	94.152	Equus_asinus_asinus
MGP_CAROLIEiJ_G0031364	Chd9	99	90.433	ENSECAG00000011505	CHD9	99	90.704	Equus_caballus
MGP_CAROLIEiJ_G0031364	Chd9	83	96.133	ENSEEUG00000014515	CHD9	87	96.133	Erinaceus_europaeus
MGP_CAROLIEiJ_G0031364	Chd9	76	74.154	ENSELUG00000006031	chd9	91	73.650	Esox_lucius
MGP_CAROLIEiJ_G0031364	Chd9	99	90.319	ENSFCAG00000022534	CHD9	98	94.872	Felis_catus
MGP_CAROLIEiJ_G0031364	Chd9	83	85.012	ENSFALG00000013276	CHD9	99	85.512	Ficedula_albicollis
MGP_CAROLIEiJ_G0031364	Chd9	99	90.427	ENSFDAG00000021037	CHD9	99	90.906	Fukomys_damarensis
MGP_CAROLIEiJ_G0031364	Chd9	84	69.536	ENSFHEG00000006068	chd9	94	69.015	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0031364	Chd9	67	76.187	ENSGMOG00000006040	chd9	83	76.187	Gadus_morhua
MGP_CAROLIEiJ_G0031364	Chd9	95	82.103	ENSGALG00000039178	CHD9	99	82.090	Gallus_gallus
MGP_CAROLIEiJ_G0031364	Chd9	84	69.881	ENSGAFG00000010014	chd9	95	68.894	Gambusia_affinis
MGP_CAROLIEiJ_G0031364	Chd9	79	67.734	ENSGACG00000016694	chd9	68	73.916	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0031364	Chd9	99	90.531	ENSGGOG00000014816	CHD9	98	95.238	Gorilla_gorilla
MGP_CAROLIEiJ_G0031364	Chd9	79	70.252	ENSHBUG00000023322	chd9	90	69.930	Haplochromis_burtoni
MGP_CAROLIEiJ_G0031364	Chd9	99	90.770	ENSHGLG00000014938	CHD9	99	95.029	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0031364	Chd9	90	66.572	ENSHCOG00000000937	chd9	97	68.186	Hippocampus_comes
MGP_CAROLIEiJ_G0031364	Chd9	80	70.508	ENSIPUG00000016448	chd9	92	73.358	Ictalurus_punctatus
MGP_CAROLIEiJ_G0031364	Chd9	99	90.538	ENSSTOG00000022273	CHD9	99	95.260	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0031364	Chd9	69	90.868	ENSJJAG00000015741	-	99	91.806	Jaculus_jaculus
MGP_CAROLIEiJ_G0031364	Chd9	84	69.617	ENSKMAG00000016784	chd9	96	60.612	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0031364	Chd9	88	64.238	ENSLBEG00000012077	chd9	66	73.066	Labrus_bergylta
MGP_CAROLIEiJ_G0031364	Chd9	99	70.120	ENSLACG00000005557	CHD9	99	69.860	Latimeria_chalumnae
MGP_CAROLIEiJ_G0031364	Chd9	87	71.446	ENSLOCG00000007225	chd9	68	78.443	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0031364	Chd9	99	89.906	ENSLAFG00000015374	CHD9	99	90.149	Loxodonta_africana
MGP_CAROLIEiJ_G0031364	Chd9	99	90.427	ENSMFAG00000041354	CHD9	98	94.872	Macaca_fascicularis
MGP_CAROLIEiJ_G0031364	Chd9	99	90.427	ENSMMUG00000016310	CHD9	98	94.872	Macaca_mulatta
MGP_CAROLIEiJ_G0031364	Chd9	99	90.361	ENSMNEG00000031494	CHD9	100	91.170	Macaca_nemestrina
MGP_CAROLIEiJ_G0031364	Chd9	99	90.461	ENSMLEG00000043219	CHD9	98	94.872	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0031364	Chd9	92	70.030	ENSMAMG00000003909	chd9	96	61.835	Mastacembelus_armatus
MGP_CAROLIEiJ_G0031364	Chd9	79	70.721	ENSMZEG00005006581	chd9	67	74.554	Maylandia_zebra
MGP_CAROLIEiJ_G0031364	Chd9	95	76.931	ENSMGAG00000004642	CHD9	72	78.235	Meleagris_gallopavo
MGP_CAROLIEiJ_G0031364	Chd9	99	90.614	ENSMICG00000016679	CHD9	98	94.872	Microcebus_murinus
MGP_CAROLIEiJ_G0031364	Chd9	85	69.619	ENSMMOG00000016406	chd9	74	62.653	Mola_mola
MGP_CAROLIEiJ_G0031364	Chd9	73	79.962	ENSMODG00000013142	-	99	91.147	Monodelphis_domestica
MGP_CAROLIEiJ_G0031364	Chd9	84	70.176	ENSMALG00000013306	chd9	73	62.483	Monopterus_albus
MGP_CAROLIEiJ_G0031364	Chd9	100	98.477	ENSMUSG00000056608	Chd9	99	99.769	Mus_musculus
MGP_CAROLIEiJ_G0031364	Chd9	100	96.417	MGP_PahariEiJ_G0022964	Chd9	100	96.417	Mus_pahari
MGP_CAROLIEiJ_G0031364	Chd9	100	98.580	MGP_SPRETEiJ_G0032483	Chd9	100	98.580	Mus_spretus
MGP_CAROLIEiJ_G0031364	Chd9	99	90.285	ENSMPUG00000003285	CHD9	99	90.632	Mustela_putorius_furo
MGP_CAROLIEiJ_G0031364	Chd9	99	89.587	ENSMLUG00000004456	CHD9	99	90.038	Myotis_lucifugus
MGP_CAROLIEiJ_G0031364	Chd9	84	68.974	ENSNBRG00000009423	chd9	67	74.362	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0031364	Chd9	90	90.996	ENSNLEG00000001026	CHD9	100	91.418	Nomascus_leucogenys
MGP_CAROLIEiJ_G0031364	Chd9	76	94.118	ENSMEUG00000008222	-	84	94.118	Notamacropus_eugenii
MGP_CAROLIEiJ_G0031364	Chd9	83	100.000	ENSOPRG00000011168	CHD9	85	96.571	Ochotona_princeps
MGP_CAROLIEiJ_G0031364	Chd9	100	90.283	ENSODEG00000004466	CHD9	100	90.248	Octodon_degus
MGP_CAROLIEiJ_G0031364	Chd9	80	71.240	ENSONIG00000002816	chd9	96	62.533	Oreochromis_niloticus
MGP_CAROLIEiJ_G0031364	Chd9	99	83.749	ENSOANG00000013401	CHD9	99	83.922	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0031364	Chd9	83	92.735	ENSOCUG00000001016	CHD9	98	93.194	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0031364	Chd9	84	69.538	ENSORLG00000013810	chd9	67	73.822	Oryzias_latipes
MGP_CAROLIEiJ_G0031364	Chd9	84	69.479	ENSORLG00015019126	chd9	99	61.585	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0031364	Chd9	99	90.427	ENSOGAG00000002110	CHD9	99	90.427	Otolemur_garnettii
MGP_CAROLIEiJ_G0031364	Chd9	99	89.501	ENSOARG00000017664	CHD9	99	89.709	Ovis_aries
MGP_CAROLIEiJ_G0031364	Chd9	82	91.004	ENSPPAG00000039388	-	99	91.423	Pan_paniscus
MGP_CAROLIEiJ_G0031364	Chd9	99	90.180	ENSPPRG00000004801	CHD9	98	94.505	Panthera_pardus
MGP_CAROLIEiJ_G0031364	Chd9	99	89.209	ENSPTIG00000021854	CHD9	99	89.348	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0031364	Chd9	99	90.701	ENSPTRG00000008113	CHD9	98	95.238	Pan_troglodytes
MGP_CAROLIEiJ_G0031364	Chd9	99	90.496	ENSPANG00000019307	CHD9	98	94.872	Papio_anubis
MGP_CAROLIEiJ_G0031364	Chd9	97	62.439	ENSPKIG00000021876	chd9	68	75.940	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0031364	Chd9	99	57.963	ENSPKIG00000025401	-	71	62.559	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0031364	Chd9	64	81.578	ENSPSIG00000008099	CHD9	99	81.578	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0031364	Chd9	59	57.455	ENSPMAG00000006035	-	72	67.309	Petromyzon_marinus
MGP_CAROLIEiJ_G0031364	Chd9	89	84.846	ENSPCIG00000017215	CHD9	97	88.629	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0031364	Chd9	79	69.682	ENSPFOG00000015839	chd9	96	60.472	Poecilia_formosa
MGP_CAROLIEiJ_G0031364	Chd9	79	69.979	ENSPLAG00000011118	chd9	95	69.366	Poecilia_latipinna
MGP_CAROLIEiJ_G0031364	Chd9	79	71.120	ENSPREG00000006473	chd9	95	69.186	Poecilia_reticulata
MGP_CAROLIEiJ_G0031364	Chd9	99	90.632	ENSPPYG00000007348	CHD9	99	90.874	Pongo_abelii
MGP_CAROLIEiJ_G0031364	Chd9	77	93.658	ENSPCAG00000007564	CHD9	86	93.658	Procavia_capensis
MGP_CAROLIEiJ_G0031364	Chd9	99	89.348	ENSPCOG00000028433	CHD9	98	95.238	Propithecus_coquereli
MGP_CAROLIEiJ_G0031364	Chd9	97	86.372	ENSPVAG00000015617	CHD9	97	87.044	Pteropus_vampyrus
MGP_CAROLIEiJ_G0031364	Chd9	84	70.287	ENSPNYG00000010947	chd9	67	74.421	Pundamilia_nyererei
MGP_CAROLIEiJ_G0031364	Chd9	80	71.589	ENSPNAG00000024141	chd9	99	68.702	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0031364	Chd9	90	93.462	ENSRNOG00000049302	Chd9	100	95.290	Rattus_norvegicus
MGP_CAROLIEiJ_G0031364	Chd9	83	92.070	ENSRBIG00000035553	CHD9	98	94.872	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0031364	Chd9	82	91.997	ENSRROG00000033278	CHD9	98	94.872	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0031364	Chd9	99	90.903	ENSSBOG00000030240	CHD9	98	94.505	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0031364	Chd9	99	83.910	ENSSHAG00000002719	CHD9	99	84.280	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0031364	Chd9	98	61.851	ENSSFOG00015020209	chd9	68	76.360	Scleropages_formosus
MGP_CAROLIEiJ_G0031364	Chd9	86	66.601	ENSSFOG00015001327	chd9	67	75.828	Scleropages_formosus
MGP_CAROLIEiJ_G0031364	Chd9	84	68.976	ENSSMAG00000008953	chd9	99	62.311	Scophthalmus_maximus
MGP_CAROLIEiJ_G0031364	Chd9	60	75.258	ENSSDUG00000006139	chd9	67	73.903	Seriola_dumerili
MGP_CAROLIEiJ_G0031364	Chd9	61	75.348	ENSSLDG00000017818	chd9	67	73.993	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0031364	Chd9	71	95.548	ENSSARG00000010632	CHD9	71	95.548	Sorex_araneus
MGP_CAROLIEiJ_G0031364	Chd9	84	70.030	ENSSPAG00000021649	chd9	67	74.006	Stegastes_partitus
MGP_CAROLIEiJ_G0031364	Chd9	90	82.187	ENSTGUG00000007476	CHD9	100	82.645	Taeniopygia_guttata
MGP_CAROLIEiJ_G0031364	Chd9	56	75.260	ENSTRUG00000009125	chd9	73	62.557	Takifugu_rubripes
MGP_CAROLIEiJ_G0031364	Chd9	65	62.150	ENSTNIG00000003825	chd9	96	62.150	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0031364	Chd9	66	92.793	ENSTBEG00000016052	-	81	92.793	Tupaia_belangeri
MGP_CAROLIEiJ_G0031364	Chd9	90	89.617	ENSTTRG00000012674	CHD9	90	90.038	Tursiops_truncatus
MGP_CAROLIEiJ_G0031364	Chd9	64	89.653	ENSUAMG00000022706	CHD9	98	95.238	Ursus_americanus
MGP_CAROLIEiJ_G0031364	Chd9	90	89.042	ENSUMAG00000004043	CHD9	98	97.122	Ursus_maritimus
MGP_CAROLIEiJ_G0031364	Chd9	97	90.264	ENSVPAG00000001374	CHD9	97	90.695	Vicugna_pacos
MGP_CAROLIEiJ_G0031364	Chd9	99	90.701	ENSVVUG00000019435	CHD9	99	90.874	Vulpes_vulpes
MGP_CAROLIEiJ_G0031364	Chd9	99	71.093	ENSXETG00000000349	chd9	96	74.517	Xenopus_tropicalis
MGP_CAROLIEiJ_G0031364	Chd9	79	70.313	ENSXCOG00000012997	chd9	95	69.578	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0031364	Chd9	79	69.563	ENSXMAG00000016192	chd9	95	69.754	Xiphophorus_maculatus