EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0031421 (Gene tree)
Gene ID: 110300221
Gene Symbol: Usb1
Alias: AA960436
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 15605 bases
Position: chr8:86823242-86838846
Accession: 110300221
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0085661	HVSL	PF09749.9	1.9e-65	1	1
MGP_CAROLIEiJ_P0085663	HVSL	PF09749.9	1.4e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0085664	-	535	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0085661	-	1759	-	MGP_CAROLIEiJ_P0085661	267 (aa)	XP_021025960	UPI000A31A7A8
MGP_CAROLIEiJ_T0085663	-	1072	-	MGP_CAROLIEiJ_P0085663	113 (aa)	-	-
MGP_CAROLIEiJ_T0085662	-	854	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0031421's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0031421's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0031421	Usb1	100	81.416	ENSG00000103005	USB1	100	84.112	Homo_sapiens
MGP_CAROLIEiJ_G0031421	Usb1	99	52.679	ENSAPOG00000011942	usb1	99	48.746	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0031421	Usb1	100	79.182	ENSAMEG00000017205	USB1	100	79.182	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0031421	Usb1	99	50.893	ENSACIG00000012234	usb1	99	52.593	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0031421	Usb1	99	51.786	ENSAOCG00000014831	usb1	99	48.754	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0031421	Usb1	99	51.786	ENSAPEG00000000296	usb1	99	49.110	Amphiprion_percula
MGP_CAROLIEiJ_G0031421	Usb1	99	50.893	ENSATEG00000009348	usb1	99	49.643	Anabas_testudineus
MGP_CAROLIEiJ_G0031421	Usb1	91	64.078	ENSAPLG00000002756	USB1	100	67.257	Anas_platyrhynchos
MGP_CAROLIEiJ_G0031421	Usb1	96	64.815	ENSACAG00000015481	USB1	100	64.192	Anolis_carolinensis
MGP_CAROLIEiJ_G0031421	Usb1	100	84.956	ENSANAG00000035640	USB1	100	81.273	Aotus_nancymaae
MGP_CAROLIEiJ_G0031421	Usb1	99	50.000	ENSACLG00000020586	usb1	99	48.571	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0031421	Usb1	99	50.893	ENSAMXG00000040146	usb1	95	47.751	Astyanax_mexicanus
MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	ENSBTAG00000015758	USB1	100	80.524	Bos_taurus
MGP_CAROLIEiJ_G0031421	Usb1	100	84.956	ENSCJAG00000011733	USB1	100	81.273	Callithrix_jacchus
MGP_CAROLIEiJ_G0031421	Usb1	100	80.531	ENSCAFG00000008556	USB1	73	77.574	Canis_familiaris
MGP_CAROLIEiJ_G0031421	Usb1	100	80.531	ENSCAFG00020009263	USB1	99	79.104	Canis_lupus_dingo
MGP_CAROLIEiJ_G0031421	Usb1	100	79.646	ENSCHIG00000024290	USB1	100	78.652	Capra_hircus
MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	ENSTSYG00000006997	USB1	100	82.022	Carlito_syrichta
MGP_CAROLIEiJ_G0031421	Usb1	100	79.646	ENSCAPG00000009057	USB1	100	68.966	Cavia_aperea
MGP_CAROLIEiJ_G0031421	Usb1	100	80.597	ENSCPOG00000014325	USB1	100	80.597	Cavia_porcellus
MGP_CAROLIEiJ_G0031421	Usb1	100	86.726	ENSCCAG00000022132	USB1	100	82.022	Cebus_capucinus
MGP_CAROLIEiJ_G0031421	Usb1	100	84.071	ENSCATG00000032174	USB1	100	81.273	Cercocebus_atys
MGP_CAROLIEiJ_G0031421	Usb1	66	84.659	ENSCLAG00000007363	USB1	100	84.659	Chinchilla_lanigera
MGP_CAROLIEiJ_G0031421	Usb1	100	84.071	ENSCSAG00000004783	USB1	100	81.273	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0031421	Usb1	100	59.292	ENSCPBG00000026943	USB1	100	60.573	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0031421	Usb1	96	33.628	ENSCING00000011490	-	98	31.136	Ciona_intestinalis
MGP_CAROLIEiJ_G0031421	Usb1	91	33.962	ENSCSAVG00000000894	-	81	32.444	Ciona_savignyi
MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	ENSCANG00000037135	USB1	100	79.775	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0031421	Usb1	100	87.611	ENSCGRG00001011243	USB1	100	87.313	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0031421	Usb1	100	87.611	ENSCGRG00000013252	USB1	100	87.313	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0031421	Usb1	99	53.571	ENSCSEG00000013881	usb1	99	47.636	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0031421	Usb1	96	45.946	ENSCVAG00000009252	usb1	97	48.684	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0031421	Usb1	99	47.321	ENSDARG00000003841	usb1	99	45.455	Danio_rerio
MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	ENSDORG00000001888	Usb1	100	82.022	Dipodomys_ordii
MGP_CAROLIEiJ_G0031421	Usb1	91	42.453	FBgn0037713	CG16790	78	39.904	Drosophila_melanogaster
MGP_CAROLIEiJ_G0031421	Usb1	100	76.106	ENSETEG00000019682	USB1	100	66.292	Echinops_telfairi
MGP_CAROLIEiJ_G0031421	Usb1	100	50.442	ENSEBUG00000005889	usb1	78	49.550	Eptatretus_burgeri
MGP_CAROLIEiJ_G0031421	Usb1	100	85.841	ENSEASG00005005484	USB1	100	83.146	Equus_asinus_asinus
MGP_CAROLIEiJ_G0031421	Usb1	100	84.071	ENSECAG00000019493	USB1	91	82.397	Equus_caballus
MGP_CAROLIEiJ_G0031421	Usb1	66	76.136	ENSEEUG00000000154	USB1	66	76.136	Erinaceus_europaeus
MGP_CAROLIEiJ_G0031421	Usb1	99	45.133	ENSELUG00000010974	usb1	99	45.878	Esox_lucius
MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	ENSFCAG00000002693	USB1	100	80.899	Felis_catus
MGP_CAROLIEiJ_G0031421	Usb1	98	61.261	ENSFALG00000006876	USB1	99	58.491	Ficedula_albicollis
MGP_CAROLIEiJ_G0031421	Usb1	100	82.301	ENSFDAG00000010052	USB1	100	81.273	Fukomys_damarensis
MGP_CAROLIEiJ_G0031421	Usb1	88	51.000	ENSFHEG00000012334	usb1	96	46.748	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0031421	Usb1	99	50.000	ENSGMOG00000004228	usb1	99	52.915	Gadus_morhua
MGP_CAROLIEiJ_G0031421	Usb1	91	66.019	ENSGALG00000035604	USB1	99	62.030	Gallus_gallus
MGP_CAROLIEiJ_G0031421	Usb1	99	50.442	ENSGAFG00000021890	usb1	99	49.818	Gambusia_affinis
MGP_CAROLIEiJ_G0031421	Usb1	99	48.214	ENSGACG00000003257	usb1	99	49.821	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0031421	Usb1	100	62.774	ENSGAGG00000022572	USB1	100	62.774	Gopherus_agassizii
MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	ENSGGOG00000017147	USB1	100	80.524	Gorilla_gorilla
MGP_CAROLIEiJ_G0031421	Usb1	99	50.000	ENSHBUG00000009823	usb1	99	48.746	Haplochromis_burtoni
MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	ENSHGLG00000016078	USB1	98	82.397	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	ENSHGLG00100005562	USB1	98	82.397	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0031421	Usb1	99	53.571	ENSHCOG00000015633	usb1	99	52.290	Hippocampus_comes
MGP_CAROLIEiJ_G0031421	Usb1	100	50.442	ENSIPUG00000008601	usb1	99	46.735	Ictalurus_punctatus
MGP_CAROLIEiJ_G0031421	Usb1	100	84.956	ENSSTOG00000007548	USB1	100	80.586	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0031421	Usb1	100	86.891	ENSJJAG00000021859	Usb1	100	86.891	Jaculus_jaculus
MGP_CAROLIEiJ_G0031421	Usb1	99	50.893	ENSKMAG00000007200	usb1	99	47.143	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0031421	Usb1	99	49.107	ENSLBEG00000008452	usb1	64	54.737	Labrus_bergylta
MGP_CAROLIEiJ_G0031421	Usb1	90	62.745	ENSLACG00000000105	USB1	92	54.307	Latimeria_chalumnae
MGP_CAROLIEiJ_G0031421	Usb1	100	53.097	ENSLOCG00000000465	usb1	99	51.601	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0031421	Usb1	100	66.296	ENSLAFG00000002267	USB1	100	67.037	Loxodonta_africana
MGP_CAROLIEiJ_G0031421	Usb1	100	84.071	ENSMFAG00000003926	USB1	100	81.273	Macaca_fascicularis
MGP_CAROLIEiJ_G0031421	Usb1	100	84.071	ENSMMUG00000022669	USB1	100	81.273	Macaca_mulatta
MGP_CAROLIEiJ_G0031421	Usb1	100	84.071	ENSMNEG00000042487	USB1	100	80.899	Macaca_nemestrina
MGP_CAROLIEiJ_G0031421	Usb1	100	84.071	ENSMLEG00000028756	USB1	100	81.273	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0031421	Usb1	99	51.786	ENSMAMG00000015092	usb1	99	50.360	Mastacembelus_armatus
MGP_CAROLIEiJ_G0031421	Usb1	99	50.000	ENSMZEG00005010008	usb1	99	48.746	Maylandia_zebra
MGP_CAROLIEiJ_G0031421	Usb1	100	87.611	ENSMAUG00000007832	Usb1	100	87.266	Mesocricetus_auratus
MGP_CAROLIEiJ_G0031421	Usb1	100	84.956	ENSMICG00000004900	USB1	100	81.273	Microcebus_murinus
MGP_CAROLIEiJ_G0031421	Usb1	100	87.266	ENSMOCG00000022647	Usb1	100	87.266	Microtus_ochrogaster
MGP_CAROLIEiJ_G0031421	Usb1	99	51.786	ENSMMOG00000000490	usb1	99	50.000	Mola_mola
MGP_CAROLIEiJ_G0031421	Usb1	100	69.027	ENSMODG00000014067	USB1	100	67.159	Monodelphis_domestica
MGP_CAROLIEiJ_G0031421	Usb1	99	48.214	ENSMALG00000005930	usb1	99	47.331	Monopterus_albus
MGP_CAROLIEiJ_G0031421	Usb1	100	98.230	ENSMUSG00000031792	Usb1	100	98.230	Mus_musculus
MGP_CAROLIEiJ_G0031421	Usb1	100	95.506	MGP_PahariEiJ_G0023019	Usb1	100	95.506	Mus_pahari
MGP_CAROLIEiJ_G0031421	Usb1	100	97.378	MGP_SPRETEiJ_G0032540	Usb1	100	97.378	Mus_spretus
MGP_CAROLIEiJ_G0031421	Usb1	100	79.646	ENSMPUG00000004684	USB1	96	78.810	Mustela_putorius_furo
MGP_CAROLIEiJ_G0031421	Usb1	100	82.301	ENSMLUG00000007400	USB1	100	84.848	Myotis_lucifugus
MGP_CAROLIEiJ_G0031421	Usb1	100	90.265	ENSNGAG00000009703	Usb1	100	87.361	Nannospalax_galili
MGP_CAROLIEiJ_G0031421	Usb1	99	48.214	ENSNBRG00000008747	usb1	99	53.738	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	ENSNLEG00000003340	USB1	100	79.762	Nomascus_leucogenys
MGP_CAROLIEiJ_G0031421	Usb1	87	71.429	ENSMEUG00000003328	-	100	62.821	Notamacropus_eugenii
MGP_CAROLIEiJ_G0031421	Usb1	100	77.876	ENSOPRG00000011803	USB1	72	94.118	Ochotona_princeps
MGP_CAROLIEiJ_G0031421	Usb1	100	79.646	ENSODEG00000016214	USB1	100	79.401	Octodon_degus
MGP_CAROLIEiJ_G0031421	Usb1	99	50.893	ENSONIG00000011063	usb1	99	49.462	Oreochromis_niloticus
MGP_CAROLIEiJ_G0031421	Usb1	95	71.963	ENSOANG00000012118	USB1	94	71.111	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0031421	Usb1	99	49.107	ENSORLG00000012479	usb1	99	48.162	Oryzias_latipes
MGP_CAROLIEiJ_G0031421	Usb1	99	48.214	ENSORLG00020018671	usb1	99	47.426	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0031421	Usb1	99	49.107	ENSORLG00015009679	usb1	99	47.794	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0031421	Usb1	99	52.679	ENSOMEG00000012930	usb1	99	48.000	Oryzias_melastigma
MGP_CAROLIEiJ_G0031421	Usb1	98	77.477	ENSOGAG00000003273	USB1	100	74.906	Otolemur_garnettii
MGP_CAROLIEiJ_G0031421	Usb1	100	80.531	ENSOARG00000001107	USB1	94	78.455	Ovis_aries
MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	ENSPPAG00000042137	USB1	100	80.899	Pan_paniscus
MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	ENSPPRG00000024797	USB1	100	80.524	Panthera_pardus
MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	ENSPTIG00000007506	USB1	100	80.524	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0031421	Usb1	100	82.301	ENSPTRG00000008172	USB1	100	84.579	Pan_troglodytes
MGP_CAROLIEiJ_G0031421	Usb1	100	84.071	ENSPANG00000025138	USB1	100	81.273	Papio_anubis
MGP_CAROLIEiJ_G0031421	Usb1	100	47.788	ENSPKIG00000015109	usb1	84	49.035	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0031421	Usb1	88	52.525	ENSPSIG00000004305	USB1	100	50.222	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0031421	Usb1	99	50.000	ENSPMGG00000017725	usb1	98	49.425	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0031421	Usb1	100	91.150	ENSPEMG00000016183	Usb1	100	87.500	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0031421	Usb1	100	48.696	ENSPMAG00000000462	usb1	99	48.374	Petromyzon_marinus
MGP_CAROLIEiJ_G0031421	Usb1	98	49.097	ENSPFOG00000011130	usb1	99	49.097	Poecilia_formosa
MGP_CAROLIEiJ_G0031421	Usb1	99	49.558	ENSPLAG00000009820	usb1	99	49.097	Poecilia_latipinna
MGP_CAROLIEiJ_G0031421	Usb1	98	49.275	ENSPMEG00000006402	usb1	99	49.275	Poecilia_mexicana
MGP_CAROLIEiJ_G0031421	Usb1	88	53.000	ENSPREG00000001047	usb1	98	50.413	Poecilia_reticulata
MGP_CAROLIEiJ_G0031421	Usb1	100	77.193	ENSPPYG00000007401	USB1	100	76.772	Pongo_abelii
MGP_CAROLIEiJ_G0031421	Usb1	100	84.956	ENSPCOG00000022612	USB1	100	81.273	Propithecus_coquereli
MGP_CAROLIEiJ_G0031421	Usb1	100	82.301	ENSPVAG00000004613	USB1	100	78.652	Pteropus_vampyrus
MGP_CAROLIEiJ_G0031421	Usb1	99	50.000	ENSPNYG00000022262	usb1	99	48.746	Pundamilia_nyererei
MGP_CAROLIEiJ_G0031421	Usb1	99	52.679	ENSPNAG00000011736	usb1	99	46.758	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0031421	Usb1	100	91.386	ENSRNOG00000013216	Usb1	100	91.386	Rattus_norvegicus
MGP_CAROLIEiJ_G0031421	Usb1	100	84.071	ENSRBIG00000044466	USB1	100	85.981	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0031421	Usb1	100	84.071	ENSRROG00000029211	USB1	100	80.899	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0031421	Usb1	100	85.841	ENSSBOG00000029362	USB1	100	81.648	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0031421	Usb1	100	70.796	ENSSHAG00000006993	USB1	100	67.451	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0031421	Usb1	100	51.327	ENSSFOG00015023663	usb1	78	53.012	Scleropages_formosus
MGP_CAROLIEiJ_G0031421	Usb1	99	51.786	ENSSMAG00000015834	usb1	99	48.639	Scophthalmus_maximus
MGP_CAROLIEiJ_G0031421	Usb1	99	51.786	ENSSDUG00000002949	usb1	99	49.638	Seriola_dumerili
MGP_CAROLIEiJ_G0031421	Usb1	99	51.786	ENSSLDG00000014174	usb1	99	49.104	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0031421	Usb1	100	64.602	ENSSPUG00000006741	USB1	100	66.355	Sphenodon_punctatus
MGP_CAROLIEiJ_G0031421	Usb1	99	50.000	ENSSPAG00000007484	usb1	99	47.350	Stegastes_partitus
MGP_CAROLIEiJ_G0031421	Usb1	100	84.071	ENSSSCG00000002807	USB1	100	81.041	Sus_scrofa
MGP_CAROLIEiJ_G0031421	Usb1	98	62.162	ENSTGUG00000004792	USB1	99	60.000	Taeniopygia_guttata
MGP_CAROLIEiJ_G0031421	Usb1	99	48.214	ENSTRUG00000021069	usb1	99	48.327	Takifugu_rubripes
MGP_CAROLIEiJ_G0031421	Usb1	99	47.170	ENSTNIG00000000626	usb1	99	47.170	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0031421	Usb1	100	63.717	ENSTBEG00000001507	USB1	100	60.776	Tupaia_belangeri
MGP_CAROLIEiJ_G0031421	Usb1	100	79.646	ENSUAMG00000016823	USB1	100	79.182	Ursus_americanus
MGP_CAROLIEiJ_G0031421	Usb1	100	79.646	ENSUMAG00000021369	USB1	100	82.710	Ursus_maritimus
MGP_CAROLIEiJ_G0031421	Usb1	72	77.778	ENSVPAG00000009834	-	100	56.098	Vicugna_pacos
MGP_CAROLIEiJ_G0031421	Usb1	100	80.531	ENSVVUG00000023700	USB1	90	80.753	Vulpes_vulpes
MGP_CAROLIEiJ_G0031421	Usb1	91	57.282	ENSXETG00000013795	usb1	99	52.672	Xenopus_tropicalis
MGP_CAROLIEiJ_G0031421	Usb1	99	50.442	ENSXMAG00000024687	usb1	80	50.204	Xiphophorus_maculatus