EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0031510 (Gene tree)
Gene ID: 110300568
Gene Symbol: Ddx28
Alias: 2410004K13Rik|Mddx28
Full Name: DEAD-box helicase 28
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 2272 bases
Position: chr8:97142710-97144981
Accession: 110300568
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0085872	DEAD	PF00270.29	2.3e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0085872	-	2272	-	MGP_CAROLIEiJ_P0085872	540 (aa)	XP_021026449	UPI000A3193C2

Gene Model

Click here to download MGP_CAROLIEiJ_G0031510's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0031510's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0031510	Ddx28	72	33.165	MGP_CAROLIEiJ_G0028986	Ddx47	70	49.398
MGP_CAROLIEiJ_G0031510	Ddx28	70	30.423	MGP_CAROLIEiJ_G0032467	Ddx43	54	30.423
MGP_CAROLIEiJ_G0031510	Ddx28	66	30.556	MGP_CAROLIEiJ_G0020017	Ddx17	51	30.556
MGP_CAROLIEiJ_G0031510	Ddx28	67	38.710	MGP_CAROLIEiJ_G0017622	Ddx1	53	38.710
MGP_CAROLIEiJ_G0031510	Ddx28	67	31.099	MGP_CAROLIEiJ_G0014656	Ddx59	55	31.099
MGP_CAROLIEiJ_G0031510	Ddx28	68	31.467	MGP_CAROLIEiJ_G0031139	Ddx49	71	31.467

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0031510	Ddx28	99	80.483	ENSG00000182810	DDX28	99	80.483	Homo_sapiens
MGP_CAROLIEiJ_G0031510	Ddx28	94	48.743	ENSAPOG00000000991	ddx28	89	48.743	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0031510	Ddx28	99	78.850	ENSAMEG00000019426	DDX28	99	77.922	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0031510	Ddx28	93	47.961	ENSACIG00000021615	ddx28	90	47.961	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0031510	Ddx28	94	48.940	ENSAOCG00000004610	ddx28	89	48.940	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0031510	Ddx28	94	48.748	ENSAPEG00000002143	ddx28	89	48.748	Amphiprion_percula
MGP_CAROLIEiJ_G0031510	Ddx28	94	48.833	ENSATEG00000018691	ddx28	90	48.833	Anabas_testudineus
MGP_CAROLIEiJ_G0031510	Ddx28	94	54.721	ENSACAG00000009755	DDX28	94	54.721	Anolis_carolinensis
MGP_CAROLIEiJ_G0031510	Ddx28	93	46.693	ENSACLG00000012984	ddx28	89	46.693	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0031510	Ddx28	93	47.619	ENSAMXG00000005878	ddx28	91	47.619	Astyanax_mexicanus
MGP_CAROLIEiJ_G0031510	Ddx28	96	80.998	ENSBTAG00000004290	DDX28	99	80.741	Bos_taurus
MGP_CAROLIEiJ_G0031510	Ddx28	98	79.395	ENSCAFG00000020327	DDX28	99	79.395	Canis_familiaris
MGP_CAROLIEiJ_G0031510	Ddx28	98	79.395	ENSCAFG00020019785	DDX28	99	79.395	Canis_lupus_dingo
MGP_CAROLIEiJ_G0031510	Ddx28	96	80.925	ENSCHIG00000009658	DDX28	99	80.483	Capra_hircus
MGP_CAROLIEiJ_G0031510	Ddx28	100	77.407	ENSCPOG00000013746	DDX28	97	78.311	Cavia_porcellus
MGP_CAROLIEiJ_G0031510	Ddx28	99	77.922	ENSCSAG00000018472	DDX28	99	77.922	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0031510	Ddx28	87	61.359	ENSCPBG00000012105	DDX28	85	60.557	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0031510	Ddx28	68	40.591	ENSCSAVG00000006341	-	94	40.591	Ciona_savignyi
MGP_CAROLIEiJ_G0031510	Ddx28	97	88.168	ENSCGRG00001024412	Ddx28	100	88.359	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0031510	Ddx28	94	47.885	ENSCSEG00000011651	ddx28	90	47.885	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0031510	Ddx28	94	50.098	ENSCVAG00000004044	ddx28	90	50.098	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0031510	Ddx28	93	49.119	ENSDARG00000060411	ddx28	90	49.119	Danio_rerio
MGP_CAROLIEiJ_G0031510	Ddx28	68	80.707	ENSDNOG00000033593	DDX28	99	80.707	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0031510	Ddx28	99	79.406	ENSDORG00000028868	Ddx28	96	80.385	Dipodomys_ordii
MGP_CAROLIEiJ_G0031510	Ddx28	88	33.951	FBgn0086130	Dbp21E2	87	33.811	Drosophila_melanogaster
MGP_CAROLIEiJ_G0031510	Ddx28	100	78.148	ENSETEG00000001062	-	96	79.463	Echinops_telfairi
MGP_CAROLIEiJ_G0031510	Ddx28	77	47.917	ENSEBUG00000004791	ddx28	80	48.187	Eptatretus_burgeri
MGP_CAROLIEiJ_G0031510	Ddx28	100	82.593	ENSEASG00005020387	DDX28	100	82.593	Equus_asinus_asinus
MGP_CAROLIEiJ_G0031510	Ddx28	100	82.222	ENSECAG00000006451	DDX28	100	82.222	Equus_caballus
MGP_CAROLIEiJ_G0031510	Ddx28	78	71.667	ENSEEUG00000005017	DDX28	96	72.087	Erinaceus_europaeus
MGP_CAROLIEiJ_G0031510	Ddx28	93	50.388	ENSELUG00000005302	ddx28	97	50.000	Esox_lucius
MGP_CAROLIEiJ_G0031510	Ddx28	99	80.705	ENSFCAG00000012858	DDX28	99	80.705	Felis_catus
MGP_CAROLIEiJ_G0031510	Ddx28	93	49.608	ENSFHEG00000012573	ddx28	90	49.608	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0031510	Ddx28	93	47.852	ENSGMOG00000017045	ddx28	95	47.852	Gadus_morhua
MGP_CAROLIEiJ_G0031510	Ddx28	93	50.382	ENSGALG00000048700	DDX28	88	51.145	Gallus_gallus
MGP_CAROLIEiJ_G0031510	Ddx28	93	48.622	ENSGAFG00000009249	ddx28	89	48.622	Gambusia_affinis
MGP_CAROLIEiJ_G0031510	Ddx28	93	50.195	ENSGACG00000016367	ddx28	94	50.195	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0031510	Ddx28	80	59.540	ENSGAGG00000004565	DDX28	94	59.540	Gopherus_agassizii
MGP_CAROLIEiJ_G0031510	Ddx28	99	80.855	ENSGGOG00000001220	DDX28	99	80.855	Gorilla_gorilla
MGP_CAROLIEiJ_G0031510	Ddx28	93	48.837	ENSHBUG00000001016	ddx28	90	48.837	Haplochromis_burtoni
MGP_CAROLIEiJ_G0031510	Ddx28	95	47.025	ENSHCOG00000017590	ddx28	93	47.025	Hippocampus_comes
MGP_CAROLIEiJ_G0031510	Ddx28	93	48.733	ENSIPUG00000017350	Ddx28	89	48.733	Ictalurus_punctatus
MGP_CAROLIEiJ_G0031510	Ddx28	100	80.370	ENSSTOG00000002064	DDX28	100	80.370	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0031510	Ddx28	100	79.151	ENSJJAG00000012460	-	100	79.151	Jaculus_jaculus
MGP_CAROLIEiJ_G0031510	Ddx28	94	48.162	ENSKMAG00000018183	ddx28	90	48.162	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0031510	Ddx28	93	48.924	ENSLBEG00000006072	ddx28	90	48.924	Labrus_bergylta
MGP_CAROLIEiJ_G0031510	Ddx28	95	53.996	ENSLACG00000005578	DDX28	88	53.996	Latimeria_chalumnae
MGP_CAROLIEiJ_G0031510	Ddx28	95	51.724	ENSLOCG00000017604	ddx28	92	51.724	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0031510	Ddx28	99	80.891	ENSLAFG00000031239	DDX28	99	80.891	Loxodonta_africana
MGP_CAROLIEiJ_G0031510	Ddx28	99	78.108	ENSMMUG00000010836	DDX28	99	78.108	Macaca_mulatta
MGP_CAROLIEiJ_G0031510	Ddx28	94	49.328	ENSMAMG00000020220	ddx28	90	49.328	Mastacembelus_armatus
MGP_CAROLIEiJ_G0031510	Ddx28	93	49.027	ENSMZEG00005009292	ddx28	90	49.027	Maylandia_zebra
MGP_CAROLIEiJ_G0031510	Ddx28	96	67.625	ENSMICG00000012346	-	99	67.593	Microcebus_murinus
MGP_CAROLIEiJ_G0031510	Ddx28	100	88.704	ENSMOCG00000009815	Ddx28	100	88.704	Microtus_ochrogaster
MGP_CAROLIEiJ_G0031510	Ddx28	95	48.555	ENSMMOG00000000270	ddx28	92	48.555	Mola_mola
MGP_CAROLIEiJ_G0031510	Ddx28	96	69.632	ENSMODG00000005303	DDX28	94	71.098	Monodelphis_domestica
MGP_CAROLIEiJ_G0031510	Ddx28	94	48.748	ENSMALG00000008864	ddx28	90	48.748	Monopterus_albus
MGP_CAROLIEiJ_G0031510	Ddx28	100	97.963	ENSMUSG00000045538	Ddx28	100	97.963	Mus_musculus
MGP_CAROLIEiJ_G0031510	Ddx28	100	96.667	MGP_PahariEiJ_G0023110	Ddx28	100	96.667	Mus_pahari
MGP_CAROLIEiJ_G0031510	Ddx28	100	97.963	MGP_SPRETEiJ_G0032628	Ddx28	100	97.963	Mus_spretus
MGP_CAROLIEiJ_G0031510	Ddx28	75	78.164	ENSMPUG00000006915	DDX28	100	78.164	Mustela_putorius_furo
MGP_CAROLIEiJ_G0031510	Ddx28	98	77.170	ENSMLUG00000005899	DDX28	98	77.170	Myotis_lucifugus
MGP_CAROLIEiJ_G0031510	Ddx28	96	84.231	ENSNGAG00000015762	Ddx28	96	84.615	Nannospalax_galili
MGP_CAROLIEiJ_G0031510	Ddx28	93	48.828	ENSNBRG00000001337	ddx28	91	48.828	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0031510	Ddx28	93	49.027	ENSONIG00000020597	ddx28	90	49.027	Oreochromis_niloticus
MGP_CAROLIEiJ_G0031510	Ddx28	52	62.544	ENSOANG00000003551	-	98	62.544	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0031510	Ddx28	100	78.889	ENSOCUG00000023074	DDX28	100	78.889	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0031510	Ddx28	93	48.828	ENSORLG00000011968	ddx28	90	48.828	Oryzias_latipes
MGP_CAROLIEiJ_G0031510	Ddx28	93	48.633	ENSORLG00020001951	ddx28	91	48.633	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0031510	Ddx28	93	48.047	ENSORLG00015023030	ddx28	91	48.047	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0031510	Ddx28	94	47.276	ENSOMEG00000012445	ddx28	90	47.276	Oryzias_melastigma
MGP_CAROLIEiJ_G0031510	Ddx28	97	78.748	ENSOGAG00000016895	DDX28	99	78.519	Otolemur_garnettii
MGP_CAROLIEiJ_G0031510	Ddx28	82	77.477	ENSOARG00000003313	DDX28	99	77.477	Ovis_aries
MGP_CAROLIEiJ_G0031510	Ddx28	99	77.323	ENSPPAG00000036971	DDX28	99	77.323	Pan_paniscus
MGP_CAROLIEiJ_G0031510	Ddx28	99	82.004	ENSPPRG00000018322	DDX28	99	82.004	Panthera_pardus
MGP_CAROLIEiJ_G0031510	Ddx28	99	78.850	ENSPTIG00000006444	DDX28	99	78.850	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0031510	Ddx28	99	80.669	ENSPTRG00000008258	DDX28	99	80.669	Pan_troglodytes
MGP_CAROLIEiJ_G0031510	Ddx28	93	49.611	ENSPKIG00000021200	ddx28	93	49.611	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0031510	Ddx28	55	63.851	ENSPSIG00000001127	DDX28	97	63.851	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0031510	Ddx28	92	46.351	ENSPMGG00000007908	ddx28	88	46.351	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0031510	Ddx28	100	87.638	ENSPEMG00000003395	Ddx28	100	87.638	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0031510	Ddx28	54	49.660	ENSPMAG00000006983	DDX28	96	49.660	Petromyzon_marinus
MGP_CAROLIEiJ_G0031510	Ddx28	93	48.819	ENSPFOG00000020952	ddx28	88	48.819	Poecilia_formosa
MGP_CAROLIEiJ_G0031510	Ddx28	93	48.819	ENSPFOG00000020838	DDX28	89	48.819	Poecilia_formosa
MGP_CAROLIEiJ_G0031510	Ddx28	93	48.819	ENSPLAG00000016292	ddx28	88	48.819	Poecilia_latipinna
MGP_CAROLIEiJ_G0031510	Ddx28	93	48.819	ENSPMEG00000011311	ddx28	87	48.819	Poecilia_mexicana
MGP_CAROLIEiJ_G0031510	Ddx28	93	48.622	ENSPREG00000002899	ddx28	88	48.622	Poecilia_reticulata
MGP_CAROLIEiJ_G0031510	Ddx28	99	80.112	ENSPPYG00000007481	DDX28	100	80.112	Pongo_abelii
MGP_CAROLIEiJ_G0031510	Ddx28	100	81.146	ENSPCOG00000024632	DDX28	100	81.146	Propithecus_coquereli
MGP_CAROLIEiJ_G0031510	Ddx28	93	49.225	ENSPNYG00000018804	ddx28	90	49.225	Pundamilia_nyererei
MGP_CAROLIEiJ_G0031510	Ddx28	93	49.228	ENSPNAG00000014597	ddx28	94	49.228	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0031510	Ddx28	99	91.837	ENSRNOG00000019817	Ddx28	99	91.837	Rattus_norvegicus
MGP_CAROLIEiJ_G0031510	Ddx28	93	50.097	ENSSFOG00015010181	ddx28	92	50.097	Scleropages_formosus
MGP_CAROLIEiJ_G0031510	Ddx28	93	48.444	ENSSMAG00000006831	ddx28	94	48.444	Scophthalmus_maximus
MGP_CAROLIEiJ_G0031510	Ddx28	93	47.379	ENSSDUG00000003257	ddx28	89	47.379	Seriola_dumerili
MGP_CAROLIEiJ_G0031510	Ddx28	93	47.379	ENSSLDG00000004513	ddx28	89	47.379	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0031510	Ddx28	99	77.509	ENSSARG00000014169	DDX28	99	77.509	Sorex_araneus
MGP_CAROLIEiJ_G0031510	Ddx28	99	46.961	ENSSPAG00000000988	ddx28	90	48.738	Stegastes_partitus
MGP_CAROLIEiJ_G0031510	Ddx28	100	81.111	ENSSSCG00000026038	DDX28	100	81.111	Sus_scrofa
MGP_CAROLIEiJ_G0031510	Ddx28	96	46.743	ENSTRUG00000007815	ddx28	94	47.519	Takifugu_rubripes
MGP_CAROLIEiJ_G0031510	Ddx28	94	48.723	ENSTNIG00000011352	ddx28	99	48.723	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0031510	Ddx28	87	86.301	ENSTBEG00000017695	DDX28	87	86.301	Tupaia_belangeri
MGP_CAROLIEiJ_G0031510	Ddx28	99	80.891	ENSUAMG00000016116	DDX28	99	80.891	Ursus_americanus
MGP_CAROLIEiJ_G0031510	Ddx28	81	81.507	ENSUMAG00000019200	DDX28	89	81.507	Ursus_maritimus
MGP_CAROLIEiJ_G0031510	Ddx28	81	76.941	ENSVVUG00000012876	DDX28	87	76.941	Vulpes_vulpes
MGP_CAROLIEiJ_G0031510	Ddx28	94	50.688	ENSXETG00000005435	ddx28	99	50.688	Xenopus_tropicalis
MGP_CAROLIEiJ_G0031510	Ddx28	93	49.213	ENSXCOG00000012364	ddx28	88	49.213	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0031510	Ddx28	93	49.409	ENSXMAG00000019603	ddx28	91	49.409	Xiphophorus_maculatus