EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0031662 (Gene tree)
Gene ID: 110300553
Gene Symbol: Snai3
Alias: Smuc|Snail-related gene from muscle cells|Zfp293
Full Name: snail family transcriptional repressor 3
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 6691 bases
Position: chr8:113614465-113621155
Accession: 110300553
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0086361	zf-C2H2	PF00096.26	1.8e-25	1	4
MGP_CAROLIEiJ_P0086361	zf-C2H2	PF00096.26	1.8e-25	2	4
MGP_CAROLIEiJ_P0086361	zf-C2H2	PF00096.26	1.8e-25	3	4
MGP_CAROLIEiJ_P0086361	zf-C2H2	PF00096.26	1.8e-25	4	4
MGP_CAROLIEiJ_P0086361	zf-met	PF12874.7	1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0086361	-	1588	XM_021170769	MGP_CAROLIEiJ_P0086361	287 (aa)	XP_021026428	UPI000A3171ED

Gene Model

Click here to download MGP_CAROLIEiJ_G0031662's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0031662's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0031662	Snai3	100	40.667	MGP_CAROLIEiJ_G0024709	Snai1	99	41.333
MGP_CAROLIEiJ_G0031662	Snai3	99	45.862	MGP_CAROLIEiJ_G0020483	Snai2	99	45.918
MGP_CAROLIEiJ_G0031662	Snai3	51	40.000	MGP_CAROLIEiJ_G0016391	Zfp672	90	40.000
MGP_CAROLIEiJ_G0031662	Snai3	55	39.610	MGP_CAROLIEiJ_G0028463	Prdm5	68	48.544
MGP_CAROLIEiJ_G0031662	Snai3	67	47.297	MGP_CAROLIEiJ_G0022445	Zfp236	56	36.242
MGP_CAROLIEiJ_G0031662	Snai3	53	36.765	MGP_CAROLIEiJ_G0027508	Gfi1	100	36.522

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0031662	Snai3	100	69.521	ENSG00000185669	SNAI3	100	71.575	Homo_sapiens
MGP_CAROLIEiJ_G0031662	Snai3	100	71.575	ENSANAG00000032748	SNAI3	100	71.575	Aotus_nancymaae
MGP_CAROLIEiJ_G0031662	Snai3	99	46.207	ENSANAG00000021163	SNAI2	99	46.259	Aotus_nancymaae
MGP_CAROLIEiJ_G0031662	Snai3	99	65.052	ENSBTAG00000017528	SNAI3	99	65.052	Bos_taurus
MGP_CAROLIEiJ_G0031662	Snai3	100	63.699	ENSCAFG00000029458	SNAI3	100	65.753	Canis_familiaris
MGP_CAROLIEiJ_G0031662	Snai3	100	64.041	ENSCAFG00020004719	SNAI3	100	66.096	Canis_lupus_dingo
MGP_CAROLIEiJ_G0031662	Snai3	99	64.706	ENSCHIG00000018087	SNAI3	99	64.706	Capra_hircus
MGP_CAROLIEiJ_G0031662	Snai3	91	66.540	ENSTSYG00000025594	SNAI3	91	68.441	Carlito_syrichta
MGP_CAROLIEiJ_G0031662	Snai3	100	70.548	ENSCATG00000031714	SNAI3	100	70.548	Cercocebus_atys
MGP_CAROLIEiJ_G0031662	Snai3	100	65.753	ENSCSAG00000003047	SNAI3	100	65.753	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0031662	Snai3	99	55.892	ENSCPBG00000023474	SNAI3	99	55.892	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0031662	Snai3	93	68.635	ENSCANG00000031124	SNAI3	83	68.635	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0031662	Snai3	100	86.411	ENSCGRG00001011389	Snai3	100	86.411	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0031662	Snai3	100	86.411	ENSCGRG00000014932	Snai3	100	86.411	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0031662	Snai3	79	48.052	ENSDNOG00000035204	-	100	50.847	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0031662	Snai3	92	65.299	ENSEASG00005000614	SNAI3	88	67.537	Equus_asinus_asinus
MGP_CAROLIEiJ_G0031662	Snai3	99	67.010	ENSECAG00000012131	SNAI3	99	69.072	Equus_caballus
MGP_CAROLIEiJ_G0031662	Snai3	100	61.301	ENSEEUG00000000841	SNAI3	100	61.301	Erinaceus_europaeus
MGP_CAROLIEiJ_G0031662	Snai3	99	48.454	ENSELUG00000018742	-	99	48.454	Esox_lucius
MGP_CAROLIEiJ_G0031662	Snai3	100	64.261	ENSFCAG00000043885	SNAI3	100	64.261	Felis_catus
MGP_CAROLIEiJ_G0031662	Snai3	99	56.463	ENSGAGG00000023571	SNAI3	99	56.463	Gopherus_agassizii
MGP_CAROLIEiJ_G0031662	Snai3	100	70.205	ENSGGOG00000012559	SNAI3	100	72.260	Gorilla_gorilla
MGP_CAROLIEiJ_G0031662	Snai3	99	44.839	ENSIPUG00000000131	snai2	99	47.766	Ictalurus_punctatus
MGP_CAROLIEiJ_G0031662	Snai3	100	76.027	ENSJJAG00000019934	Snai3	100	77.740	Jaculus_jaculus
MGP_CAROLIEiJ_G0031662	Snai3	99	46.367	ENSLOCG00000005992	SNAI2	99	46.713	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0031662	Snai3	100	64.726	ENSLAFG00000005117	SNAI3	100	66.096	Loxodonta_africana
MGP_CAROLIEiJ_G0031662	Snai3	100	71.233	ENSMFAG00000032064	SNAI3	100	71.233	Macaca_fascicularis
MGP_CAROLIEiJ_G0031662	Snai3	100	71.233	ENSMMUG00000008716	SNAI3	100	71.233	Macaca_mulatta
MGP_CAROLIEiJ_G0031662	Snai3	100	71.233	ENSMNEG00000045515	SNAI3	100	71.233	Macaca_nemestrina
MGP_CAROLIEiJ_G0031662	Snai3	91	69.288	ENSMLEG00000033191	SNAI3	91	69.288	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0031662	Snai3	100	85.714	ENSMAUG00000001685	Snai3	100	85.714	Mesocricetus_auratus
MGP_CAROLIEiJ_G0031662	Snai3	100	85.714	ENSMOCG00000003536	Snai3	100	85.714	Microtus_ochrogaster
MGP_CAROLIEiJ_G0031662	Snai3	100	98.258	ENSMUSG00000006587	Snai3	100	98.258	Mus_musculus
MGP_CAROLIEiJ_G0031662	Snai3	99	45.862	ENSMUSG00000022676	Snai2	99	45.918	Mus_musculus
MGP_CAROLIEiJ_G0031662	Snai3	100	94.444	MGP_PahariEiJ_G0023260	Snai3	100	94.444	Mus_pahari
MGP_CAROLIEiJ_G0031662	Snai3	99	45.862	MGP_PahariEiJ_G0016188	Snai2	99	45.918	Mus_pahari
MGP_CAROLIEiJ_G0031662	Snai3	100	97.909	MGP_SPRETEiJ_G0032780	Snai3	100	97.909	Mus_spretus
MGP_CAROLIEiJ_G0031662	Snai3	99	45.862	MGP_SPRETEiJ_G0021379	Snai2	99	45.918	Mus_spretus
MGP_CAROLIEiJ_G0031662	Snai3	100	61.724	ENSMPUG00000008104	SNAI3	100	63.793	Mustela_putorius_furo
MGP_CAROLIEiJ_G0031662	Snai3	100	76.610	ENSNGAG00000023039	Snai3	100	76.610	Nannospalax_galili
MGP_CAROLIEiJ_G0031662	Snai3	100	70.548	ENSNLEG00000000595	SNAI3	100	72.603	Nomascus_leucogenys
MGP_CAROLIEiJ_G0031662	Snai3	100	64.041	ENSOGAG00000000419	SNAI3	100	67.119	Otolemur_garnettii
MGP_CAROLIEiJ_G0031662	Snai3	90	46.269	ENSOARG00000013069	-	99	46.269	Ovis_aries
MGP_CAROLIEiJ_G0031662	Snai3	100	69.521	ENSPPAG00000043301	SNAI3	100	71.575	Pan_paniscus
MGP_CAROLIEiJ_G0031662	Snai3	99	64.111	ENSPPRG00000008511	SNAI3	99	64.111	Panthera_pardus
MGP_CAROLIEiJ_G0031662	Snai3	100	69.521	ENSPTRG00000008460	SNAI3	100	71.575	Pan_troglodytes
MGP_CAROLIEiJ_G0031662	Snai3	100	70.890	ENSPANG00000000509	SNAI3	100	70.890	Papio_anubis
MGP_CAROLIEiJ_G0031662	Snai3	99	49.837	ENSPKIG00000007872	SNAI3	99	49.837	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0031662	Snai3	76	56.957	ENSPSIG00000004262	SNAI3	91	56.957	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0031662	Snai3	56	62.733	ENSPMGG00000013179	SNAI2	99	44.371	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0031662	Snai3	100	69.863	ENSPPYG00000007643	SNAI3	100	71.918	Pongo_abelii
MGP_CAROLIEiJ_G0031662	Snai3	100	90.244	ENSRNOG00000013586	Snai3	100	90.244	Rattus_norvegicus
MGP_CAROLIEiJ_G0031662	Snai3	100	71.233	ENSRBIG00000025770	SNAI3	100	71.233	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0031662	Snai3	100	71.575	ENSRROG00000032757	SNAI3	100	71.575	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0031662	Snai3	99	45.051	ENSSFOG00015018025	SNAI2	99	47.119	Scleropages_formosus
MGP_CAROLIEiJ_G0031662	Snai3	99	44.444	ENSSFOG00015016115	snai3	93	46.254	Scleropages_formosus
MGP_CAROLIEiJ_G0031662	Snai3	99	63.605	ENSTTRG00000006262	SNAI3	99	63.605	Tursiops_truncatus
MGP_CAROLIEiJ_G0031662	Snai3	100	65.411	ENSUAMG00000020030	SNAI3	100	67.123	Ursus_americanus
MGP_CAROLIEiJ_G0031662	Snai3	100	64.384	ENSVVUG00000003233	SNAI3	100	66.438	Vulpes_vulpes
MGP_CAROLIEiJ_G0031662	Snai3	99	44.781	ENSXETG00000024006	snai2	99	44.781	Xenopus_tropicalis