EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0031670 (Gene tree)
Gene ID: 110300697
Gene Symbol: Pabpn1l
Alias: LOC382035|ePABP2
Full Name: poly(A) binding protein nuclear 1 like%2C cytoplasmic
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 3295 bases
Position: chr8:113781258-113784552
Accession: 110300697
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0086388	RRM_1	PF00076.22	4.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0086388	-	1139	XM_021170954	MGP_CAROLIEiJ_P0086388	273 (aa)	XP_021026613	UPI000A319A8E

Gene Model

Click here to download MGP_CAROLIEiJ_G0031670's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0031670's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0031670	Pabpn1l	51	55.944	MGP_CAROLIEiJ_G0019277	Pabpn1	92	51.899
MGP_CAROLIEiJ_G0031670	Pabpn1l	51	55.944	MGP_CAROLIEiJ_G0019276	Gm20521	57	47.449

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	66.667	ENSG00000205022	PABPN1L	100	66.667	Homo_sapiens
MGP_CAROLIEiJ_G0031670	Pabpn1l	52	54.225	ENSAPOG00000000685	PABPN1L	55	47.423	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0031670	Pabpn1l	52	53.521	ENSACIG00000021400	PABPN1L	82	50.898	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0031670	Pabpn1l	71	55.102	ENSACAG00000013250	PABPN1L	100	55.102	Anolis_carolinensis
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	63.538	ENSANAG00000038178	PABPN1L	100	64.982	Aotus_nancymaae
MGP_CAROLIEiJ_G0031670	Pabpn1l	57	49.359	ENSACLG00000025147	PABPN1L	68	44.928	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0031670	Pabpn1l	58	53.797	ENSAMXG00000010873	PABPN1L	71	50.794	Astyanax_mexicanus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	62.724	ENSBTAG00000023752	-	100	63.799	Bos_taurus
MGP_CAROLIEiJ_G0031670	Pabpn1l	51	72.662	ENSBTAG00000006727	-	85	72.662	Bos_taurus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	61.455	ENSCJAG00000045284	PABPN1L	100	64.130	Callithrix_jacchus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	61.754	ENSCHIG00000013987	PABPN1L	100	61.754	Capra_hircus
MGP_CAROLIEiJ_G0031670	Pabpn1l	95	62.313	ENSCAPG00000007240	PABPN1L	100	62.687	Cavia_aperea
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	63.504	ENSCPOG00000025951	PABPN1L	100	63.869	Cavia_porcellus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	61.957	ENSCCAG00000027631	PABPN1L	100	64.621	Cebus_capucinus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	65.455	ENSCATG00000031060	PABPN1L	100	67.029	Cercocebus_atys
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	64.599	ENSCLAG00000000704	PABPN1L	100	64.599	Chinchilla_lanigera
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	63.356	ENSCSAG00000002881	PABPN1L	100	64.041	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0031670	Pabpn1l	71	52.475	ENSCPBG00000023441	PABPN1L	61	54.315	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	62.681	ENSCANG00000039336	PABPN1L	100	64.982	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	80.727	ENSCGRG00001013211	Pabpn1l	100	81.091	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	80.727	ENSCGRG00000015868	Pabpn1l	100	81.091	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	50.896	ENSDNOG00000034677	PABPN1L	100	55.914	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	64.029	ENSEASG00005000777	PABPN1L	100	64.029	Equus_asinus_asinus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	64.388	ENSECAG00000000378	PABPN1L	100	64.388	Equus_caballus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	59.124	ENSEEUG00000004747	PABPN1L	100	59.124	Erinaceus_europaeus
MGP_CAROLIEiJ_G0031670	Pabpn1l	54	54.730	ENSELUG00000018385	PABPN1L	71	45.161	Esox_lucius
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	63.799	ENSFCAG00000010465	PABPN1L	100	63.799	Felis_catus
MGP_CAROLIEiJ_G0031670	Pabpn1l	72	52.792	ENSFALG00000003319	PABPN1L	90	46.341	Ficedula_albicollis
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	66.788	ENSFDAG00000021067	PABPN1L	100	66.788	Fukomys_damarensis
MGP_CAROLIEiJ_G0031670	Pabpn1l	59	48.765	ENSFHEG00000018295	PABPN1L	68	46.602	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0031670	Pabpn1l	53	60.135	ENSGALG00000006242	PABPN1L	84	60.135	Gallus_gallus
MGP_CAROLIEiJ_G0031670	Pabpn1l	59	51.479	ENSGACG00000015428	PABPN1L	63	52.299	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0031670	Pabpn1l	65	53.552	ENSGAGG00000010613	PABPN1L	60	53.552	Gopherus_agassizii
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	65.818	ENSGGOG00000012670	PABPN1L	100	67.391	Gorilla_gorilla
MGP_CAROLIEiJ_G0031670	Pabpn1l	57	49.359	ENSHBUG00000002388	PABPN1L	68	45.411	Haplochromis_burtoni
MGP_CAROLIEiJ_G0031670	Pabpn1l	96	66.031	ENSHGLG00000014207	PABPN1L	100	66.031	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0031670	Pabpn1l	96	66.031	ENSHGLG00100005230	PABPN1L	100	66.031	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	64.516	ENSSTOG00000020814	PABPN1L	100	64.516	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	69.455	ENSJJAG00000006433	Pabpn1l	100	69.455	Jaculus_jaculus
MGP_CAROLIEiJ_G0031670	Pabpn1l	71	60.714	ENSLAFG00000025902	-	78	60.714	Loxodonta_africana
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	64.727	ENSMFAG00000002924	PABPN1L	100	66.304	Macaca_fascicularis
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	64.364	ENSMMUG00000012438	PABPN1L	100	65.942	Macaca_mulatta
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	64.727	ENSMNEG00000044808	PABPN1L	100	66.304	Macaca_nemestrina
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	65.455	ENSMLEG00000032667	PABPN1L	100	67.029	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0031670	Pabpn1l	57	49.359	ENSMZEG00005002186	PABPN1L	68	44.928	Maylandia_zebra
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	79.273	ENSMAUG00000014032	Pabpn1l	100	80.989	Mesocricetus_auratus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	66.182	ENSMICG00000028179	PABPN1L	100	66.182	Microcebus_murinus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	79.487	ENSMOCG00000007955	Pabpn1l	100	79.487	Microtus_ochrogaster
MGP_CAROLIEiJ_G0031670	Pabpn1l	99	52.364	ENSMODG00000003873	-	99	52.920	Monodelphis_domestica
MGP_CAROLIEiJ_G0031670	Pabpn1l	64	48.276	ENSMALG00000016926	PABPN1L	68	45.588	Monopterus_albus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	97.802	ENSMUSG00000069867	Pabpn1l	100	97.802	Mus_musculus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	93.407	MGP_PahariEiJ_G0023268	Pabpn1l	100	93.407	Mus_pahari
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	97.436	MGP_SPRETEiJ_G0032788	Pabpn1l	100	97.436	Mus_spretus
MGP_CAROLIEiJ_G0031670	Pabpn1l	96	48.736	ENSMLUG00000003228	PABPN1L	95	48.736	Myotis_lucifugus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	76.642	ENSNGAG00000023992	Pabpn1l	100	76.642	Nannospalax_galili
MGP_CAROLIEiJ_G0031670	Pabpn1l	57	49.359	ENSNBRG00000017078	PABPN1L	69	46.875	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	66.545	ENSOPRG00000005597	PABPN1L	100	66.545	Ochotona_princeps
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	58.741	ENSODEG00000004649	PABPN1L	100	58.741	Octodon_degus
MGP_CAROLIEiJ_G0031670	Pabpn1l	98	52.708	ENSOANG00000013901	PABPN1L	98	54.444	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0031670	Pabpn1l	71	49.231	ENSORLG00000026560	PABPN1L	71	49.231	Oryzias_latipes
MGP_CAROLIEiJ_G0031670	Pabpn1l	71	49.231	ENSORLG00020015068	PABPN1L	71	49.231	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0031670	Pabpn1l	71	49.231	ENSORLG00015000397	PABPN1L	71	49.231	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0031670	Pabpn1l	76	45.673	ENSOMEG00000017896	PABPN1L	54	45.673	Oryzias_melastigma
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	63.273	ENSOGAG00000000433	PABPN1L	100	63.273	Otolemur_garnettii
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	60.396	ENSOARG00000013682	PABPN1L	100	61.386	Ovis_aries
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	66.308	ENSPPAG00000028866	PABPN1L	100	66.667	Pan_paniscus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	63.799	ENSPPRG00000015106	PABPN1L	100	63.799	Panthera_pardus
MGP_CAROLIEiJ_G0031670	Pabpn1l	93	59.533	ENSPTIG00000015606	PABPN1L	100	59.533	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	66.308	ENSPTRG00000031120	PABPN1L	100	66.667	Pan_troglodytes
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	65.091	ENSPANG00000026039	PABPN1L	100	66.667	Papio_anubis
MGP_CAROLIEiJ_G0031670	Pabpn1l	70	51.905	ENSPSIG00000003404	PABPN1L	100	53.171	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	79.562	ENSPEMG00000016624	Pabpn1l	100	79.562	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0031670	Pabpn1l	52	64.336	ENSPCIG00000007038	-	99	64.336	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	65.827	ENSPPYG00000007655	PABPN1L	100	67.025	Pongo_abelii
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	65.091	ENSPCOG00000024077	PABPN1L	100	65.455	Propithecus_coquereli
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	64.184	ENSPVAG00000002716	PABPN1L	100	65.248	Pteropus_vampyrus
MGP_CAROLIEiJ_G0031670	Pabpn1l	57	49.359	ENSPNYG00000004803	PABPN1L	68	44.928	Pundamilia_nyererei
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	86.081	ENSRNOG00000029558	Pabpn1l	100	86.081	Rattus_norvegicus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	65.818	ENSRBIG00000030740	PABPN1L	100	67.391	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0031670	Pabpn1l	99	64.599	ENSRROG00000035483	-	99	65.818	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	66.667	ENSRROG00000032240	-	100	66.667	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	61.957	ENSSBOG00000018410	PABPN1L	100	64.260	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0031670	Pabpn1l	99	48.980	ENSSHAG00000010001	-	99	48.980	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0031670	Pabpn1l	59	47.531	ENSSDUG00000006986	PABPN1L	68	45.146	Seriola_dumerili
MGP_CAROLIEiJ_G0031670	Pabpn1l	59	47.531	ENSSLDG00000021845	PABPN1L	68	45.146	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0031670	Pabpn1l	90	52.245	ENSSARG00000005178	-	97	52.245	Sorex_araneus
MGP_CAROLIEiJ_G0031670	Pabpn1l	70	55.959	ENSSPUG00000007031	PABPN1L	84	56.186	Sphenodon_punctatus
MGP_CAROLIEiJ_G0031670	Pabpn1l	74	43.842	ENSSPAG00000017978	PABPN1L	68	45.146	Stegastes_partitus
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	62.681	ENSSSCG00000036367	PABPN1L	100	63.768	Sus_scrofa
MGP_CAROLIEiJ_G0031670	Pabpn1l	64	45.856	ENSTRUG00000024725	PABPN1L	80	42.342	Takifugu_rubripes
MGP_CAROLIEiJ_G0031670	Pabpn1l	100	60.791	ENSTTRG00000004691	PABPN1L	100	63.441	Tursiops_truncatus