EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0031729 (Gene tree)
Gene ID: 110300702
Gene Symbol: Tarbp1
Alias: Gm17296
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 46583 bases
Position: chr8:117535554-117582136
Accession: 110300702
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0086575	SpoU_methylase	PF00588.19	1.6e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0086575	-	5060	XM_021170959	MGP_CAROLIEiJ_P0086575	1579 (aa)	XP_021026618	UPI000A31A14F
MGP_CAROLIEiJ_T0086576	-	990	-	MGP_CAROLIEiJ_P0086576	329 (aa)	-	-
MGP_CAROLIEiJ_T0086577	-	4047	-	MGP_CAROLIEiJ_P0086577	1339 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0031729's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0031729's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0031729	Tarbp1	99	72.789	ENSG00000059588	TARBP1	99	72.727	Homo_sapiens
MGP_CAROLIEiJ_G0031729	Tarbp1	99	41.509	ENSAPOG00000016419	si:dkey-85a20.4	86	44.288	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0031729	Tarbp1	86	76.708	ENSAMEG00000003359	TARBP1	99	76.708	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0031729	Tarbp1	55	68.852	ENSACIG00000020931	si:dkey-85a20.4	100	68.852	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0031729	Tarbp1	56	68.108	ENSAOCG00000009950	si:dkey-85a20.4	100	68.108	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0031729	Tarbp1	56	68.108	ENSAPEG00000012906	si:dkey-85a20.4	100	68.108	Amphiprion_percula
MGP_CAROLIEiJ_G0031729	Tarbp1	95	42.192	ENSATEG00000020266	si:dkey-85a20.4	94	42.156	Anabas_testudineus
MGP_CAROLIEiJ_G0031729	Tarbp1	78	77.432	ENSAPLG00000007666	TARBP1	99	62.977	Anas_platyrhynchos
MGP_CAROLIEiJ_G0031729	Tarbp1	98	53.943	ENSACAG00000001142	TARBP1	98	54.224	Anolis_carolinensis
MGP_CAROLIEiJ_G0031729	Tarbp1	93	72.650	ENSANAG00000022031	TARBP1	99	68.302	Aotus_nancymaae
MGP_CAROLIEiJ_G0031729	Tarbp1	55	69.399	ENSACLG00000002018	si:dkey-85a20.4	100	69.399	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0031729	Tarbp1	57	67.742	ENSAMXG00000018028	si:dkey-85a20.4	97	67.742	Astyanax_mexicanus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	71.605	ENSBTAG00000004517	TARBP1	99	76.562	Bos_taurus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	72.215	ENSCJAG00000018155	TARBP1	99	72.233	Callithrix_jacchus
MGP_CAROLIEiJ_G0031729	Tarbp1	90	74.230	ENSCAFG00000011533	TARBP1	99	74.734	Canis_familiaris
MGP_CAROLIEiJ_G0031729	Tarbp1	99	71.429	ENSCAFG00020027141	TARBP1	99	71.985	Canis_lupus_dingo
MGP_CAROLIEiJ_G0031729	Tarbp1	99	70.962	ENSCHIG00000011437	TARBP1	99	71.270	Capra_hircus
MGP_CAROLIEiJ_G0031729	Tarbp1	79	81.154	ENSTSYG00000010382	TARBP1	96	75.460	Carlito_syrichta
MGP_CAROLIEiJ_G0031729	Tarbp1	81	67.555	ENSCAPG00000010831	TARBP1	99	67.712	Cavia_aperea
MGP_CAROLIEiJ_G0031729	Tarbp1	99	72.476	ENSCPOG00000013995	TARBP1	99	73.668	Cavia_porcellus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	72.384	ENSCCAG00000037278	TARBP1	99	72.570	Cebus_capucinus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	72.212	ENSCATG00000011754	TARBP1	100	72.520	Cercocebus_atys
MGP_CAROLIEiJ_G0031729	Tarbp1	81	81.887	ENSCLAG00000003655	TARBP1	99	77.370	Chinchilla_lanigera
MGP_CAROLIEiJ_G0031729	Tarbp1	79	80.077	ENSCSAG00000010100	TARBP1	99	76.250	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0031729	Tarbp1	94	60.812	ENSCPBG00000005587	TARBP1	98	60.786	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0031729	Tarbp1	78	42.966	ENSCING00000006232	-	95	43.590	Ciona_intestinalis
MGP_CAROLIEiJ_G0031729	Tarbp1	96	38.558	ENSCSAVG00000005745	-	98	36.580	Ciona_savignyi
MGP_CAROLIEiJ_G0031729	Tarbp1	86	76.310	ENSCANG00000034343	TARBP1	99	76.310	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	88.713	ENSCGRG00001016690	Tarbp1	99	88.523	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0031729	Tarbp1	93	88.358	ENSCGRG00000016893	Tarbp1	100	88.150	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0031729	Tarbp1	99	39.323	ENSCSEG00000005255	si:dkey-85a20.4	99	46.080	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0031729	Tarbp1	57	68.783	ENSDARG00000092550	si:dkey-85a20.4	98	68.783	Danio_rerio
MGP_CAROLIEiJ_G0031729	Tarbp1	79	62.162	ENSDARG00000079055	si:dkey-85a20.4	99	54.639	Danio_rerio
MGP_CAROLIEiJ_G0031729	Tarbp1	99	69.660	ENSDNOG00000008637	TARBP1	99	70.285	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0031729	Tarbp1	78	78.599	ENSDORG00000007984	Tarbp1	100	74.266	Dipodomys_ordii
MGP_CAROLIEiJ_G0031729	Tarbp1	99	73.769	ENSEASG00005000252	TARBP1	99	74.019	Equus_asinus_asinus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	73.408	ENSECAG00000023673	TARBP1	99	75.497	Equus_caballus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	40.671	ENSELUG00000012193	si:dkey-85a20.4	99	40.549	Esox_lucius
MGP_CAROLIEiJ_G0031729	Tarbp1	99	69.221	ENSFCAG00000014183	TARBP1	99	70.025	Felis_catus
MGP_CAROLIEiJ_G0031729	Tarbp1	77	75.889	ENSFALG00000013565	TARBP1	99	63.206	Ficedula_albicollis
MGP_CAROLIEiJ_G0031729	Tarbp1	81	74.227	ENSFDAG00000001308	TARBP1	99	73.568	Fukomys_damarensis
MGP_CAROLIEiJ_G0031729	Tarbp1	92	49.518	ENSFHEG00000007565	si:dkey-85a20.4	95	54.167	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0031729	Tarbp1	80	58.029	ENSGMOG00000004549	si:dkey-85a20.4	99	43.360	Gadus_morhua
MGP_CAROLIEiJ_G0031729	Tarbp1	99	55.354	ENSGALG00000011000	TARBP1	99	55.875	Gallus_gallus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	40.575	ENSGAFG00000007387	si:dkey-85a20.4	91	42.430	Gambusia_affinis
MGP_CAROLIEiJ_G0031729	Tarbp1	78	60.153	ENSGACG00000005865	si:dkey-85a20.4	99	44.319	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	62.123	ENSGAGG00000012102	TARBP1	99	62.313	Gopherus_agassizii
MGP_CAROLIEiJ_G0031729	Tarbp1	86	74.177	ENSGGOG00000022879	TARBP1	99	74.177	Gorilla_gorilla
MGP_CAROLIEiJ_G0031729	Tarbp1	78	60.536	ENSHBUG00000008877	si:dkey-85a20.4	85	45.558	Haplochromis_burtoni
MGP_CAROLIEiJ_G0031729	Tarbp1	99	73.793	ENSHGLG00000011592	TARBP1	99	74.483	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0031729	Tarbp1	98	74.619	ENSHGLG00100015169	TARBP1	99	74.619	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0031729	Tarbp1	55	66.310	ENSHCOG00000013439	si:dkey-85a20.4	100	66.310	Hippocampus_comes
MGP_CAROLIEiJ_G0031729	Tarbp1	74	59.917	ENSIPUG00000005249	si:dkey-85a20.4	83	42.919	Ictalurus_punctatus
MGP_CAROLIEiJ_G0031729	Tarbp1	89	74.241	ENSSTOG00000032291	TARBP1	99	74.315	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0031729	Tarbp1	95	75.071	ENSJJAG00000017840	Tarbp1	99	75.071	Jaculus_jaculus
MGP_CAROLIEiJ_G0031729	Tarbp1	78	59.302	ENSKMAG00000017546	si:dkey-85a20.4	82	46.623	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0031729	Tarbp1	80	59.245	ENSLBEG00000012132	si:dkey-85a20.4	85	49.404	Labrus_bergylta
MGP_CAROLIEiJ_G0031729	Tarbp1	99	48.746	ENSLACG00000004337	TARBP1	99	48.837	Latimeria_chalumnae
MGP_CAROLIEiJ_G0031729	Tarbp1	99	45.610	ENSLOCG00000016214	si:dkey-85a20.4	100	45.427	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0031729	Tarbp1	96	69.854	ENSLAFG00000011394	TARBP1	99	70.865	Loxodonta_africana
MGP_CAROLIEiJ_G0031729	Tarbp1	99	70.629	ENSMFAG00000041068	TARBP1	100	70.753	Macaca_fascicularis
MGP_CAROLIEiJ_G0031729	Tarbp1	99	70.111	ENSMMUG00000021703	TARBP1	100	70.172	Macaca_mulatta
MGP_CAROLIEiJ_G0031729	Tarbp1	99	72.335	ENSMNEG00000045002	TARBP1	100	72.397	Macaca_nemestrina
MGP_CAROLIEiJ_G0031729	Tarbp1	86	76.032	ENSMLEG00000044182	TARBP1	100	76.032	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0031729	Tarbp1	78	59.690	ENSMAMG00000021760	si:dkey-85a20.4	92	42.593	Mastacembelus_armatus
MGP_CAROLIEiJ_G0031729	Tarbp1	78	60.920	ENSMZEG00005005751	si:dkey-85a20.4	85	45.571	Maylandia_zebra
MGP_CAROLIEiJ_G0031729	Tarbp1	100	87.532	ENSMAUG00000020968	Tarbp1	100	87.405	Mesocricetus_auratus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	65.261	ENSMICG00000015280	TARBP1	99	65.716	Microcebus_murinus
MGP_CAROLIEiJ_G0031729	Tarbp1	100	87.017	ENSMOCG00000004128	Tarbp1	100	87.017	Microtus_ochrogaster
MGP_CAROLIEiJ_G0031729	Tarbp1	99	40.711	ENSMMOG00000007795	si:dkey-85a20.4	99	40.834	Mola_mola
MGP_CAROLIEiJ_G0031729	Tarbp1	99	63.801	ENSMODG00000008504	TARBP1	99	63.818	Monodelphis_domestica
MGP_CAROLIEiJ_G0031729	Tarbp1	99	41.441	ENSMALG00000002916	si:dkey-85a20.4	95	42.440	Monopterus_albus
MGP_CAROLIEiJ_G0031729	Tarbp1	100	97.087	ENSMUSG00000090290	Tarbp1	100	97.087	Mus_musculus
MGP_CAROLIEiJ_G0031729	Tarbp1	100	95.509	MGP_PahariEiJ_G0023326	Tarbp1	100	95.509	Mus_pahari
MGP_CAROLIEiJ_G0031729	Tarbp1	100	96.833	MGP_SPRETEiJ_G0032846	Tarbp1	100	96.833	Mus_spretus
MGP_CAROLIEiJ_G0031729	Tarbp1	81	81.648	ENSMPUG00000002802	TARBP1	99	75.000	Mustela_putorius_furo
MGP_CAROLIEiJ_G0031729	Tarbp1	79	78.764	ENSMLUG00000002414	TARBP1	99	70.888	Myotis_lucifugus
MGP_CAROLIEiJ_G0031729	Tarbp1	55	68.306	ENSNBRG00000014368	si:dkey-85a20.4	100	68.306	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0031729	Tarbp1	99	72.710	ENSNLEG00000002518	TARBP1	99	72.649	Nomascus_leucogenys
MGP_CAROLIEiJ_G0031729	Tarbp1	78	75.486	ENSMEUG00000011370	-	67	71.674	Notamacropus_eugenii
MGP_CAROLIEiJ_G0031729	Tarbp1	81	78.652	ENSOPRG00000013822	TARBP1	71	78.089	Ochotona_princeps
MGP_CAROLIEiJ_G0031729	Tarbp1	99	71.681	ENSODEG00000005238	TARBP1	99	71.808	Octodon_degus
MGP_CAROLIEiJ_G0031729	Tarbp1	78	60.465	ENSONIG00000009789	si:dkey-85a20.4	99	44.993	Oreochromis_niloticus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	72.256	ENSOCUG00000017418	TARBP1	99	72.441	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0031729	Tarbp1	78	59.302	ENSORLG00000010529	si:dkey-85a20.4	85	43.232	Oryzias_latipes
MGP_CAROLIEiJ_G0031729	Tarbp1	99	40.208	ENSORLG00020019264	si:dkey-85a20.4	85	43.162	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0031729	Tarbp1	78	58.915	ENSORLG00015003276	si:dkey-85a20.4	85	42.877	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0031729	Tarbp1	56	67.568	ENSOMEG00000001519	-	100	67.568	Oryzias_melastigma
MGP_CAROLIEiJ_G0031729	Tarbp1	99	69.907	ENSOGAG00000002379	TARBP1	99	69.969	Otolemur_garnettii
MGP_CAROLIEiJ_G0031729	Tarbp1	90	73.445	ENSOARG00000003434	TARBP1	99	68.872	Ovis_aries
MGP_CAROLIEiJ_G0031729	Tarbp1	86	76.804	ENSPPAG00000028097	TARBP1	99	76.804	Pan_paniscus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	68.105	ENSPPRG00000013561	TARBP1	99	68.543	Panthera_pardus
MGP_CAROLIEiJ_G0031729	Tarbp1	85	75.635	ENSPTIG00000009281	TARBP1	99	75.635	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0031729	Tarbp1	99	72.621	ENSPTRG00000002124	TARBP1	99	72.682	Pan_troglodytes
MGP_CAROLIEiJ_G0031729	Tarbp1	99	72.582	ENSPANG00000021933	TARBP1	100	72.643	Papio_anubis
MGP_CAROLIEiJ_G0031729	Tarbp1	99	42.883	ENSPKIG00000016716	si:dkey-85a20.4	84	46.634	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0031729	Tarbp1	78	75.486	ENSPSIG00000010699	TARBP1	99	64.692	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0031729	Tarbp1	56	65.946	ENSPMGG00000019801	si:dkey-85a20.4	100	65.946	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	88.702	ENSPEMG00000006888	Tarbp1	99	88.702	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0031729	Tarbp1	90	80.500	ENSPCIG00000029710	TARBP1	98	80.500	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0031729	Tarbp1	78	58.015	ENSPFOG00000013020	si:dkey-85a20.4	99	43.803	Poecilia_formosa
MGP_CAROLIEiJ_G0031729	Tarbp1	78	58.846	ENSPLAG00000006044	si:dkey-85a20.4	85	43.497	Poecilia_latipinna
MGP_CAROLIEiJ_G0031729	Tarbp1	78	59.231	ENSPMEG00000017857	si:dkey-85a20.4	85	43.630	Poecilia_mexicana
MGP_CAROLIEiJ_G0031729	Tarbp1	78	59.459	ENSPREG00000022753	si:dkey-85a20.4	85	44.097	Poecilia_reticulata
MGP_CAROLIEiJ_G0031729	Tarbp1	90	75.408	ENSPPYG00000000102	TARBP1	99	75.340	Pongo_abelii
MGP_CAROLIEiJ_G0031729	Tarbp1	85	87.162	ENSPCAG00000004808	TARBP1	85	87.162	Procavia_capensis
MGP_CAROLIEiJ_G0031729	Tarbp1	99	69.926	ENSPCOG00000005666	TARBP1	99	70.359	Propithecus_coquereli
MGP_CAROLIEiJ_G0031729	Tarbp1	99	60.910	ENSPVAG00000014798	TARBP1	99	61.596	Pteropus_vampyrus
MGP_CAROLIEiJ_G0031729	Tarbp1	78	60.153	ENSPNYG00000019135	si:dkey-85a20.4	85	44.301	Pundamilia_nyererei
MGP_CAROLIEiJ_G0031729	Tarbp1	100	87.080	ENSRNOG00000053574	Tarbp1	100	87.080	Rattus_norvegicus
MGP_CAROLIEiJ_G0031729	Tarbp1	91	69.412	ENSRBIG00000043362	TARBP1	98	69.412	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0031729	Tarbp1	99	70.857	ENSRROG00000029527	TARBP1	99	71.205	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0031729	Tarbp1	88	76.187	ENSSBOG00000034503	TARBP1	99	76.187	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0031729	Tarbp1	78	76.357	ENSSHAG00000000013	TARBP1	99	68.429	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0031729	Tarbp1	78	61.240	ENSSFOG00015002660	si:dkey-85a20.4	97	46.171	Scleropages_formosus
MGP_CAROLIEiJ_G0031729	Tarbp1	78	59.770	ENSSMAG00000007081	si:dkey-85a20.4	99	41.657	Scophthalmus_maximus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	41.235	ENSSDUG00000023566	si:dkey-85a20.4	99	41.481	Seriola_dumerili
MGP_CAROLIEiJ_G0031729	Tarbp1	78	60.837	ENSSLDG00000020200	si:dkey-85a20.4	86	45.070	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0031729	Tarbp1	89	76.852	ENSSARG00000012207	TARBP1	89	76.852	Sorex_araneus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	59.080	ENSSPUG00000015364	TARBP1	99	59.441	Sphenodon_punctatus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	41.187	ENSSPAG00000007213	si:dkey-85a20.4	94	42.246	Stegastes_partitus
MGP_CAROLIEiJ_G0031729	Tarbp1	99	71.808	ENSSSCG00000010160	TARBP1	99	72.116	Sus_scrofa
MGP_CAROLIEiJ_G0031729	Tarbp1	78	75.486	ENSTGUG00000010214	TARBP1	100	63.122	Taeniopygia_guttata
MGP_CAROLIEiJ_G0031729	Tarbp1	79	60.456	ENSTNIG00000016586	si:dkey-85a20.4	99	44.139	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0031729	Tarbp1	92	70.786	ENSTTRG00000008707	TARBP1	96	70.709	Tursiops_truncatus
MGP_CAROLIEiJ_G0031729	Tarbp1	79	82.308	ENSUMAG00000006730	TARBP1	99	76.248	Ursus_maritimus
MGP_CAROLIEiJ_G0031729	Tarbp1	72	85.859	ENSVPAG00000007665	TARBP1	80	84.158	Vicugna_pacos
MGP_CAROLIEiJ_G0031729	Tarbp1	89	73.647	ENSVVUG00000007460	TARBP1	99	74.558	Vulpes_vulpes
MGP_CAROLIEiJ_G0031729	Tarbp1	86	52.505	ENSXETG00000016224	tarbp1	99	52.505	Xenopus_tropicalis
MGP_CAROLIEiJ_G0031729	Tarbp1	75	57.831	ENSXCOG00000011779	si:dkey-85a20.4	94	47.832	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0031729	Tarbp1	64	52.607	ENSXMAG00000009600	si:dkey-85a20.4	100	42.254	Xiphophorus_maculatus