EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
MGP_CAROLIEiJ_G0032535 (Gene tree)
Gene ID
110302417
Gene Symbol
Xrn1
Alias
Dhm2|mXrn1
Full Name
5'-3' exoribonuclease 1
Gene Type
protein_coding
Species
Mus_caroli
Status
putative
Strand
Plus strand
Length
107275 bases
Position
chr9:91557591-91664865
Accession
891964
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_CAROLIEiJ_P0089117XRN_NPF03159.182.9e-9611
MGP_CAROLIEiJ_P0089113XRN_NPF03159.186.1e-9611
MGP_CAROLIEiJ_P0089112XRN_NPF03159.189.8e-9611
MGP_CAROLIEiJ_P0089114XRN_NPF03159.188.9e-1311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_CAROLIEiJ_T0089119-844--- (aa)--
MGP_CAROLIEiJ_T0089118-3572--- (aa)--
MGP_CAROLIEiJ_T0089117-3089-MGP_CAROLIEiJ_P0089117969 (aa)--
MGP_CAROLIEiJ_T0089116-6008--- (aa)--
MGP_CAROLIEiJ_T0089115-3133--- (aa)--
MGP_CAROLIEiJ_T0089114-357-MGP_CAROLIEiJ_P008911440 (aa)-UPI000462120E
MGP_CAROLIEiJ_T0089113-9740-MGP_CAROLIEiJ_P00891131645 (aa)--
MGP_CAROLIEiJ_T0089112-5279-MGP_CAROLIEiJ_P00891121649 (aa)--
Gene Model
Click here to download MGP_CAROLIEiJ_G0032535's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0032535's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
MGP_CAROLIEiJ_G0032535Xrn19066.667MGP_CAROLIEiJ_G0024400Xrn27139.385
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSG00000114127XRN110098.788Homo_sapiens
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSAPOG00000000622xrn19476.891Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSAMEG00000012538XRN19694.471Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0032535Xrn110087.805ENSACIG00000001057xrn19678.503Amphilophus_citrinellus
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSAOCG00000014097xrn19866.050Amphiprion_ocellaris
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSAPEG00000006620xrn19167.122Amphiprion_percula
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSATEG00000009752xrn19576.349Anabas_testudineus
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSAPLG00000004905XRN110068.910Anas_platyrhynchos
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSACAG00000004985XRN19684.554Anolis_carolinensis
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSANAG00000029013XRN19695.103Aotus_nancymaae
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSACLG00000004806xrn19677.358Astatotilapia_calliptera
MGP_CAROLIEiJ_G0032535Xrn110095.000ENSAMXG00000019370xrn19594.175Astyanax_mexicanus
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSBTAG00000011524XRN19693.365Bos_taurus
MGP_CAROLIEiJ_G0032535Xrn110067.500WBGene00012730xrn-17752.402Caenorhabditis_elegans
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSCJAG00000001872XRN19694.945Callithrix_jacchus
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSCAFG00000007783XRN19694.629Canis_familiaris
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSCAFG00020009120XRN19992.894Canis_lupus_dingo
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSCHIG00000019192XRN19979.722Capra_hircus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSTSYG00000002705XRN19694.945Carlito_syrichta
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSCAPG00000004604-9972.564Cavia_aperea
MGP_CAROLIEiJ_G0032535Xrn153100.000ENSCPOG00000035199-100100.000Cavia_porcellus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSCCAG00000034800XRN19995.248Cebus_capucinus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSCATG00000041794XRN19695.419Cercocebus_atys
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSCLAG00000001451XRN19994.215Chinchilla_lanigera
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSCSAG00000011265XRN19695.577Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0032535Xrn16198.701ENSCHOG00000013961-6098.701Choloepus_hoffmanni
MGP_CAROLIEiJ_G0032535Xrn110085.000ENSCING00000001334-9570.652Ciona_intestinalis
MGP_CAROLIEiJ_G0032535Xrn110085.000ENSCSAVG00000008584-9061.905Ciona_savignyi
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSCANG00000037495XRN19995.248Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSCGRG00001019411Xrn19997.723Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSCGRG00000012464Xrn19997.723Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSCSEG00000021285xrn19495.192Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSCVAG00000013089xrn19276.837Cyprinodon_variegatus
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSDARG00000091652xrn19880.380Danio_rerio
MGP_CAROLIEiJ_G0032535Xrn153100.000ENSDNOG00000034202-10098.058Dasypus_novemcinctus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSDORG00000013833Xrn110078.555Dipodomys_ordii
MGP_CAROLIEiJ_G0032535Xrn19568.421FBgn0020261pcm7638.753Drosophila_melanogaster
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSETEG00000003978XRN18496.774Echinops_telfairi
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSEASG00005002687XRN19994.731Equus_asinus_asinus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSECAG00000008301XRN19694.629Equus_caballus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSEEUG00000011323XRN18595.096Erinaceus_europaeus
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSELUG00000000169xrn19679.393Esox_lucius
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSFCAG00000027589XRN19994.066Felis_catus
MGP_CAROLIEiJ_G0032535Xrn110095.000ENSFALG00000007021XRN110066.704Ficedula_albicollis
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSFDAG00000020494XRN19993.905Fukomys_damarensis
MGP_CAROLIEiJ_G0032535Xrn153100.000ENSFHEG00000017255-10095.146Fundulus_heteroclitus
MGP_CAROLIEiJ_G0032535Xrn15070.124ENSFHEG00000017356-9970.124Fundulus_heteroclitus
MGP_CAROLIEiJ_G0032535Xrn110095.000ENSGMOG00000006396xrn18462.023Gadus_morhua
MGP_CAROLIEiJ_G0032535Xrn110095.000ENSGALG00000002706XRN110067.697Gallus_gallus
MGP_CAROLIEiJ_G0032535Xrn153100.000ENSGAFG00000006293-10094.175Gambusia_affinis
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSGACG00000014328xrn19676.535Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSGAGG00000017535XRN19971.042Gopherus_agassizii
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSGGOG00000008047XRN19694.945Gorilla_gorilla
MGP_CAROLIEiJ_G0032535Xrn110087.805ENSHBUG00000005908xrn19873.717Haplochromis_burtoni
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSHGLG00000014476XRN110094.525Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSHGLG00100015130XRN110094.525Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0032535Xrn16087.500ENSHCOG00000013992-9096.117Hippocampus_comes
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSHCOG00000014062xrn19577.638Hippocampus_comes
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSIPUG00000015229xrn19579.266Ictalurus_punctatus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSSTOG00000013552XRN19995.549Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSJJAG00000010863Xrn19993.849Jaculus_jaculus
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSKMAG00000021356xrn19475.949Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0032535Xrn110095.000ENSLBEG00000018656xrn19796.117Labrus_bergylta
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSLACG00000009020XRN110064.408Latimeria_chalumnae
MGP_CAROLIEiJ_G0032535Xrn110095.000ENSLOCG00000007944xrn110058.619Lepisosteus_oculatus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSLAFG00000015426XRN19294.612Loxodonta_africana
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSMFAG00000032599XRN19695.419Macaca_fascicularis
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSMMUG00000014038XRN19695.419Macaca_mulatta
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSMNEG00000034217XRN19695.103Macaca_nemestrina
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSMLEG00000041349-9995.374Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSMAMG00000013219xrn19477.366Mastacembelus_armatus
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSMZEG00005015099xrn19677.044Maylandia_zebra
MGP_CAROLIEiJ_G0032535Xrn110095.000ENSMGAG00000006333XRN110067.131Meleagris_gallopavo
MGP_CAROLIEiJ_G0032535Xrn153100.000ENSMAUG00000014268-97100.000Mesocricetus_auratus
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSMICG00000048948XRN196100.000Microcebus_murinus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSMOCG00000008665Xrn19996.677Microtus_ochrogaster
MGP_CAROLIEiJ_G0032535Xrn15385.714ENSMMOG00000020896-9668.450Mola_mola
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSMODG00000021236XRN110070.890Monodelphis_domestica
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSMALG00000004098xrn19670.494Monopterus_albus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSMUSG00000032410Xrn1100100.000Mus_musculus
MGP_CAROLIEiJ_G0032535Xrn1100100.000MGP_PahariEiJ_G0015404Xrn1100100.000Mus_pahari
MGP_CAROLIEiJ_G0032535Xrn1100100.000MGP_SPRETEiJ_G0033678Xrn1100100.000Mus_spretus
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSMPUG00000012040XRN19695.261Mustela_putorius_furo
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSMLUG00000016885XRN110079.017Myotis_lucifugus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSNGAG00000023964Xrn110092.427Nannospalax_galili
MGP_CAROLIEiJ_G0032535Xrn153100.000ENSNBRG00000001531-9995.146Neolamprologus_brichardi
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSNLEG00000004726XRN19695.577Nomascus_leucogenys
MGP_CAROLIEiJ_G0032535Xrn17198.969ENSMEUG00000014473-6599.029Notamacropus_eugenii
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSOPRG00000007337-7883.040Ochotona_princeps
MGP_CAROLIEiJ_G0032535Xrn153100.000ENSODEG00000008804-100100.000Octodon_degus
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSONIG00000016673xrn19959.215Oreochromis_niloticus
MGP_CAROLIEiJ_G0032535Xrn18586.290ENSOANG00000006735XRN110068.727Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSOCUG00000001861XRN110079.107Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSORLG00000013005xrn19678.493Oryzias_latipes
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSORLG00020005559xrn19678.650Oryzias_latipes_hni
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSORLG00015022523xrn19677.673Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSOMEG00000015397xrn19678.219Oryzias_melastigma
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSOGAG00000000170XRN19689.889Otolemur_garnettii
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSOARG00000006343XRN19979.518Ovis_aries
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSPPAG00000010180XRN19694.471Pan_paniscus
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSPPRG00000007125XRN19694.479Panthera_pardus
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSPTIG00000021081XRN19694.322Panthera_tigris_altaica
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSPTRG00000015482XRN19694.471Pan_troglodytes
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSPANG00000010638XRN19695.419Papio_anubis
MGP_CAROLIEiJ_G0032535Xrn153100.000ENSPKIG00000011903-7996.117Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0032535Xrn110095.000ENSPSIG00000018050XRN110069.213Pelodiscus_sinensis
MGP_CAROLIEiJ_G0032535Xrn110095.000ENSPMGG00000002648xrn19873.795Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSPEMG00000020610Xrn19997.205Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSPMAG00000002975xrn18377.874Petromyzon_marinus
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSPCIG00000028735XRN19988.241Phascolarctos_cinereus
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSPFOG00000013932xrn19378.323Poecilia_formosa
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSPLAG00000021653xrn19378.628Poecilia_latipinna
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSPMEG00000003076xrn19078.254Poecilia_mexicana
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSPREG00000021147xrn19678.165Poecilia_reticulata
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSPPYG00000014172XRN19695.261Pongo_abelii
MGP_CAROLIEiJ_G0032535Xrn110095.000ENSPCAG00000005638XRN18793.407Procavia_capensis
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSPCOG00000013089XRN19995.145Propithecus_coquereli
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSPVAG00000016265XRN19292.936Pteropus_vampyrus
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSPNYG00000010570xrn19476.972Pundamilia_nyererei
MGP_CAROLIEiJ_G0032535Xrn110095.000ENSPNAG00000023531xrn19956.936Pygocentrus_nattereri
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSRNOG00000042951Xrn19697.472Rattus_norvegicus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSRBIG00000041227XRN19695.261Rhinopithecus_bieti
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSRROG00000033764-100100.000Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0032535Xrn110070.000YGL173CXRN17354.223Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSSBOG00000029561XRN110079.400Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSSHAG00000016207XRN110071.529Sarcophilus_harrisii
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSSFOG00015024211xrn110057.283Scleropages_formosus
MGP_CAROLIEiJ_G0032535Xrn110095.000ENSSMAG00000016534xrn19579.715Scophthalmus_maximus
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSSDUG00000010306xrn19767.951Seriola_dumerili
MGP_CAROLIEiJ_G0032535Xrn110092.500ENSSLDG00000021543xrn19479.332Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSSARG00000007741-7391.500Sorex_araneus
MGP_CAROLIEiJ_G0032535Xrn153100.000ENSSPUG00000010754-10096.117Sphenodon_punctatus
MGP_CAROLIEiJ_G0032535Xrn18860.526ENSSPAG00000009856-9676.970Stegastes_partitus
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSTGUG00000008498XRN110068.685Taeniopygia_guttata
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSTRUG00000004895xrn19775.789Takifugu_rubripes
MGP_CAROLIEiJ_G0032535Xrn110087.805ENSTNIG00000017615xrn19574.168Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSTBEG00000003256XRN18985.965Tupaia_belangeri
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSTTRG00000012914XRN19691.153Tursiops_truncatus
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSUAMG00000001608XRN19991.727Ursus_americanus
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSUMAG00000013625XRN19694.945Ursus_maritimus
MGP_CAROLIEiJ_G0032535Xrn1100100.000ENSVPAG00000004690XRN19694.629Vicugna_pacos
MGP_CAROLIEiJ_G0032535Xrn110097.500ENSVVUG00000024461XRN19995.145Vulpes_vulpes
MGP_CAROLIEiJ_G0032535Xrn110095.000ENSXETG00000000619xrn19988.542Xenopus_tropicalis
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSXCOG00000007917xrn19665.933Xiphophorus_couchianus
MGP_CAROLIEiJ_G0032535Xrn110090.000ENSXMAG00000018320xrn19577.476Xiphophorus_maculatus

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