EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0032617 (Gene tree)
Gene ID: 110301580
Gene Symbol: Poc1a
Alias: 2510040D07Rik|Wdr51a|cha
Full Name: POC1 centriolar protein A
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 69055 bases
Position: chr9:101668426-101737480
Accession: 110301580
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0089512	eIF2A	PF08662.11	2.8e-10	1	1
MGP_CAROLIEiJ_P0089511	eIF2A	PF08662.11	4.9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0089513	-	1444	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0089512	-	1243	-	MGP_CAROLIEiJ_P0089512	356 (aa)	-	-
MGP_CAROLIEiJ_T0089511	-	1697	XM_021172097	MGP_CAROLIEiJ_P0089511	405 (aa)	XP_021027756	UPI000A3159E7
MGP_CAROLIEiJ_T0089515	-	526	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0089514	-	745	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0032617's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0032617's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0032617	Poc1a	80	36.364	MGP_CAROLIEiJ_G0024251	Ciao1	80	36.364
MGP_CAROLIEiJ_G0032617	Poc1a	80	30.332	MGP_CAROLIEiJ_G0015153	Pex7	73	30.332
MGP_CAROLIEiJ_G0032617	Poc1a	70	32.500	MGP_CAROLIEiJ_G0018818	Utp15	54	31.556
MGP_CAROLIEiJ_G0032617	Poc1a	82	30.625	MGP_CAROLIEiJ_G0026078	Prpf4	56	30.625
MGP_CAROLIEiJ_G0032617	Poc1a	81	32.353	MGP_CAROLIEiJ_G0032233	Wdr61	97	31.658
MGP_CAROLIEiJ_G0032617	Poc1a	93	32.716	MGP_CAROLIEiJ_G0025421	Wdr3	56	32.716
MGP_CAROLIEiJ_G0032617	Poc1a	83	34.496	MGP_CAROLIEiJ_G0020710	Wdr5b	92	34.496
MGP_CAROLIEiJ_G0032617	Poc1a	83	35.659	MGP_CAROLIEiJ_G0023343	Wdr5	98	30.973

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0032617	Poc1a	100	92.201	ENSG00000164087	POC1A	100	92.201	Homo_sapiens
MGP_CAROLIEiJ_G0032617	Poc1a	96	80.147	ENSAPOG00000002677	POC1A	98	80.147	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0032617	Poc1a	100	90.663	ENSAMEG00000009136	POC1A	99	90.663	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0032617	Poc1a	94	84.615	ENSACIG00000018288	poc1a	76	84.615	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0032617	Poc1a	98	78.777	ENSAOCG00000001066	POC1A	97	78.808	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0032617	Poc1a	97	79.139	ENSAPEG00000005795	poc1a	96	75.872	Amphiprion_percula
MGP_CAROLIEiJ_G0032617	Poc1a	98	77.556	ENSAPLG00000007756	POC1A	99	77.556	Anas_platyrhynchos
MGP_CAROLIEiJ_G0032617	Poc1a	100	89.681	ENSANAG00000030897	POC1A	100	89.681	Aotus_nancymaae
MGP_CAROLIEiJ_G0032617	Poc1a	99	77.597	ENSACLG00000017869	POC1A	98	78.808	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0032617	Poc1a	96	72.222	ENSAMXG00000024703	poc1a	97	72.222	Astyanax_mexicanus
MGP_CAROLIEiJ_G0032617	Poc1a	98	90.349	ENSBTAG00000001471	POC1A	100	90.244	Bos_taurus
MGP_CAROLIEiJ_G0032617	Poc1a	100	91.086	ENSCJAG00000005972	POC1A	100	91.086	Callithrix_jacchus
MGP_CAROLIEiJ_G0032617	Poc1a	100	84.236	ENSCAFG00020022379	POC1A	100	84.236	Canis_lupus_dingo
MGP_CAROLIEiJ_G0032617	Poc1a	100	89.926	ENSCHIG00000002571	POC1A	100	89.926	Capra_hircus
MGP_CAROLIEiJ_G0032617	Poc1a	100	92.758	ENSTSYG00000008302	POC1A	100	92.758	Carlito_syrichta
MGP_CAROLIEiJ_G0032617	Poc1a	83	94.074	ENSCAPG00000016201	POC1A	89	80.435	Cavia_aperea
MGP_CAROLIEiJ_G0032617	Poc1a	100	90.503	ENSCPOG00000006740	POC1A	100	90.503	Cavia_porcellus
MGP_CAROLIEiJ_G0032617	Poc1a	100	90.172	ENSCCAG00000023380	POC1A	100	90.172	Cebus_capucinus
MGP_CAROLIEiJ_G0032617	Poc1a	100	89.189	ENSCATG00000021822	POC1A	100	89.189	Cercocebus_atys
MGP_CAROLIEiJ_G0032617	Poc1a	99	85.634	ENSCLAG00000010593	POC1A	99	85.634	Chinchilla_lanigera
MGP_CAROLIEiJ_G0032617	Poc1a	98	89.702	ENSCSAG00000013862	POC1A	100	89.702	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0032617	Poc1a	80	87.085	ENSCPBG00000016728	POC1A	98	87.085	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0032617	Poc1a	96	66.869	ENSCSAVG00000008477	-	99	66.869	Ciona_savignyi
MGP_CAROLIEiJ_G0032617	Poc1a	99	91.854	ENSCANG00000033064	POC1A	99	91.854	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0032617	Poc1a	99	93.521	ENSCGRG00001007357	Poc1a	99	93.521	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0032617	Poc1a	96	68.205	ENSCSEG00000010287	POC1A	94	73.786	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0032617	Poc1a	97	66.830	ENSCVAG00000015594	POC1A	97	77.703	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0032617	Poc1a	83	59.797	ENSEBUG00000008013	poc1a	85	59.797	Eptatretus_burgeri
MGP_CAROLIEiJ_G0032617	Poc1a	76	60.000	ENSEBUG00000008246	POC1A	55	59.184	Eptatretus_burgeri
MGP_CAROLIEiJ_G0032617	Poc1a	87	66.987	ENSEBUG00000002614	POC1A	94	66.667	Eptatretus_burgeri
MGP_CAROLIEiJ_G0032617	Poc1a	97	68.182	ENSELUG00000015504	poc1a	97	68.486	Esox_lucius
MGP_CAROLIEiJ_G0032617	Poc1a	100	92.479	ENSFCAG00000015704	POC1A	100	92.479	Felis_catus
MGP_CAROLIEiJ_G0032617	Poc1a	99	74.384	ENSFALG00000008922	POC1A	99	74.384	Ficedula_albicollis
MGP_CAROLIEiJ_G0032617	Poc1a	100	90.223	ENSFDAG00000011606	POC1A	100	90.223	Fukomys_damarensis
MGP_CAROLIEiJ_G0032617	Poc1a	98	68.579	ENSFHEG00000015504	POC1A	98	72.755	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0032617	Poc1a	99	78.470	ENSGALG00000034572	-	98	78.470	Gallus_gallus
MGP_CAROLIEiJ_G0032617	Poc1a	98	68.905	ENSGACG00000007015	poc1a	97	68.905	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0032617	Poc1a	99	76.980	ENSGAGG00000014637	POC1A	99	76.980	Gopherus_agassizii
MGP_CAROLIEiJ_G0032617	Poc1a	100	91.643	ENSGGOG00000006652	POC1A	100	91.643	Gorilla_gorilla
MGP_CAROLIEiJ_G0032617	Poc1a	100	91.061	ENSHGLG00000013436	POC1A	100	91.061	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0032617	Poc1a	100	89.681	ENSHGLG00100003479	POC1A	100	89.681	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0032617	Poc1a	97	67.939	ENSIPUG00000001227	POC1A	95	67.939	Ictalurus_punctatus
MGP_CAROLIEiJ_G0032617	Poc1a	100	92.179	ENSSTOG00000002638	POC1A	100	92.179	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0032617	Poc1a	100	92.737	ENSJJAG00000018739	Poc1a	100	92.737	Jaculus_jaculus
MGP_CAROLIEiJ_G0032617	Poc1a	96	82.143	ENSLBEG00000016119	POC1A	97	72.446	Labrus_bergylta
MGP_CAROLIEiJ_G0032617	Poc1a	100	66.972	ENSLACG00000018788	POC1A	98	80.263	Latimeria_chalumnae
MGP_CAROLIEiJ_G0032617	Poc1a	97	71.782	ENSLOCG00000013801	poc1a	96	71.782	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0032617	Poc1a	99	81.841	ENSLAFG00000028434	POC1A	100	87.375	Loxodonta_africana
MGP_CAROLIEiJ_G0032617	Poc1a	98	89.160	ENSMFAG00000001970	POC1A	100	89.160	Macaca_fascicularis
MGP_CAROLIEiJ_G0032617	Poc1a	100	89.189	ENSMMUG00000012485	POC1A	100	89.189	Macaca_mulatta
MGP_CAROLIEiJ_G0032617	Poc1a	98	89.160	ENSMNEG00000042811	POC1A	100	89.160	Macaca_nemestrina
MGP_CAROLIEiJ_G0032617	Poc1a	100	90.808	ENSMLEG00000039574	POC1A	100	90.808	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0032617	Poc1a	96	78.417	ENSMAMG00000014233	POC1A	98	78.417	Mastacembelus_armatus
MGP_CAROLIEiJ_G0032617	Poc1a	99	77.597	ENSMZEG00005013503	POC1A	98	78.808	Maylandia_zebra
MGP_CAROLIEiJ_G0032617	Poc1a	95	82.903	ENSMGAG00000001628	POC1A	99	67.562	Meleagris_gallopavo
MGP_CAROLIEiJ_G0032617	Poc1a	99	95.493	ENSMAUG00000017403	Poc1a	99	95.493	Mesocricetus_auratus
MGP_CAROLIEiJ_G0032617	Poc1a	100	92.479	ENSMICG00000002709	POC1A	100	92.479	Microcebus_murinus
MGP_CAROLIEiJ_G0032617	Poc1a	91	95.692	ENSMOCG00000003396	Poc1a	100	94.370	Microtus_ochrogaster
MGP_CAROLIEiJ_G0032617	Poc1a	98	66.917	ENSMMOG00000010427	poc1a	94	66.917	Mola_mola
MGP_CAROLIEiJ_G0032617	Poc1a	87	85.113	ENSMODG00000011717	POC1A	96	77.568	Monodelphis_domestica
MGP_CAROLIEiJ_G0032617	Poc1a	98	73.950	ENSMALG00000009054	poc1a	95	73.950	Monopterus_albus
MGP_CAROLIEiJ_G0032617	Poc1a	100	99.506	ENSMUSG00000023345	Poc1a	100	99.506	Mus_musculus
MGP_CAROLIEiJ_G0032617	Poc1a	100	98.876	MGP_PahariEiJ_G0015485	Poc1a	100	98.876	Mus_pahari
MGP_CAROLIEiJ_G0032617	Poc1a	100	99.259	MGP_SPRETEiJ_G0033763	Poc1a	100	99.259	Mus_spretus
MGP_CAROLIEiJ_G0032617	Poc1a	100	90.909	ENSMPUG00000011723	POC1A	100	90.909	Mustela_putorius_furo
MGP_CAROLIEiJ_G0032617	Poc1a	99	89.655	ENSMLUG00000015092	POC1A	92	89.655	Myotis_lucifugus
MGP_CAROLIEiJ_G0032617	Poc1a	100	92.611	ENSNGAG00000005212	Poc1a	100	92.611	Nannospalax_galili
MGP_CAROLIEiJ_G0032617	Poc1a	97	65.937	ENSNBRG00000022135	poc1a	98	78.523	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0032617	Poc1a	100	91.365	ENSNLEG00000007084	POC1A	100	91.365	Nomascus_leucogenys
MGP_CAROLIEiJ_G0032617	Poc1a	91	96.429	ENSMEUG00000007715	-	79	96.429	Notamacropus_eugenii
MGP_CAROLIEiJ_G0032617	Poc1a	98	86.828	ENSOPRG00000008831	POC1A	91	86.828	Ochotona_princeps
MGP_CAROLIEiJ_G0032617	Poc1a	99	90.099	ENSODEG00000018290	POC1A	100	90.099	Octodon_degus
MGP_CAROLIEiJ_G0032617	Poc1a	99	76.623	ENSONIG00000014378	POC1A	98	77.815	Oreochromis_niloticus
MGP_CAROLIEiJ_G0032617	Poc1a	98	88.889	ENSOCUG00000002080	POC1A	100	88.889	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0032617	Poc1a	98	82.143	ENSOMEG00000019834	POC1A	76	82.143	Oryzias_melastigma
MGP_CAROLIEiJ_G0032617	Poc1a	100	84.878	ENSOGAG00000032245	POC1A	100	84.878	Otolemur_garnettii
MGP_CAROLIEiJ_G0032617	Poc1a	100	89.926	ENSOARG00000006352	POC1A	100	89.681	Ovis_aries
MGP_CAROLIEiJ_G0032617	Poc1a	100	92.201	ENSPPAG00000043583	POC1A	100	92.201	Pan_paniscus
MGP_CAROLIEiJ_G0032617	Poc1a	100	92.479	ENSPPRG00000003365	POC1A	100	92.479	Panthera_pardus
MGP_CAROLIEiJ_G0032617	Poc1a	98	91.328	ENSPTIG00000005388	POC1A	100	91.328	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0032617	Poc1a	100	92.201	ENSPTRG00000014989	POC1A	100	92.201	Pan_troglodytes
MGP_CAROLIEiJ_G0032617	Poc1a	86	85.668	ENSPSIG00000014809	POC1A	87	86.557	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0032617	Poc1a	96	69.409	ENSPMGG00000005356	poc1a	95	69.409	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0032617	Poc1a	91	94.154	ENSPEMG00000024131	Poc1a	100	94.154	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0032617	Poc1a	96	75.472	ENSPMAG00000000333	poc1a	98	60.390	Petromyzon_marinus
MGP_CAROLIEiJ_G0032617	Poc1a	99	77.612	ENSPCIG00000018160	POC1A	99	77.612	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0032617	Poc1a	100	90.418	ENSPPYG00000013816	POC1A	100	90.418	Pongo_abelii
MGP_CAROLIEiJ_G0032617	Poc1a	100	85.995	ENSPCAG00000002118	POC1A	100	85.995	Procavia_capensis
MGP_CAROLIEiJ_G0032617	Poc1a	100	93.315	ENSPCOG00000012625	POC1A	100	93.315	Propithecus_coquereli
MGP_CAROLIEiJ_G0032617	Poc1a	100	71.007	ENSPVAG00000012480	POC1A	100	71.007	Pteropus_vampyrus
MGP_CAROLIEiJ_G0032617	Poc1a	98	70.677	ENSPNYG00000019517	poc1a	98	78.523	Pundamilia_nyererei
MGP_CAROLIEiJ_G0032617	Poc1a	98	70.283	ENSPNAG00000007556	POC1A	97	80.259	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0032617	Poc1a	98	91.848	ENSRNOG00000037295	Poc1a	100	91.848	Rattus_norvegicus
MGP_CAROLIEiJ_G0032617	Poc1a	100	91.365	ENSRBIG00000031748	POC1A	100	91.365	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0032617	Poc1a	100	91.365	ENSRROG00000044472	POC1A	100	91.365	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0032617	Poc1a	100	89.589	ENSSBOG00000027902	POC1A	100	90.515	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0032617	Poc1a	96	82.143	ENSSMAG00000013505	POC1A	96	68.719	Scophthalmus_maximus
MGP_CAROLIEiJ_G0032617	Poc1a	94	82.143	ENSSDUG00000016161	POC1A	97	63.596	Seriola_dumerili
MGP_CAROLIEiJ_G0032617	Poc1a	94	82.143	ENSSLDG00000003828	POC1A	97	78.146	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0032617	Poc1a	93	83.456	ENSSPUG00000008656	POC1A	99	83.456	Sphenodon_punctatus
MGP_CAROLIEiJ_G0032617	Poc1a	98	59.305	ENSSPAG00000020330	POC1A	93	59.305	Stegastes_partitus
MGP_CAROLIEiJ_G0032617	Poc1a	100	89.435	ENSSSCG00000011426	POC1A	100	89.435	Sus_scrofa
MGP_CAROLIEiJ_G0032617	Poc1a	98	73.935	ENSTGUG00000006036	POC1A	99	73.935	Taeniopygia_guttata
MGP_CAROLIEiJ_G0032617	Poc1a	96	65.169	ENSTRUG00000007900	POC1A	96	65.169	Takifugu_rubripes
MGP_CAROLIEiJ_G0032617	Poc1a	85	72.517	ENSTNIG00000014818	POC1A	98	72.517	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0032617	Poc1a	100	87.224	ENSTTRG00000016798	POC1A	100	87.224	Tursiops_truncatus
MGP_CAROLIEiJ_G0032617	Poc1a	100	90.663	ENSUAMG00000020816	POC1A	100	90.663	Ursus_americanus
MGP_CAROLIEiJ_G0032617	Poc1a	98	90.786	ENSUMAG00000021482	POC1A	100	90.786	Ursus_maritimus
MGP_CAROLIEiJ_G0032617	Poc1a	97	66.667	ENSXETG00000010813	poc1a	95	66.667	Xenopus_tropicalis