EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
MGP_CAROLIEiJ_G0033034 (Gene tree)
Gene ID
110286566
Gene Symbol
Smarca1
Alias
5730494M04Rik|Snf2l
Full Name
SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type
protein_coding
Species
Mus_caroli
Status
putative
Strand
Minus strand
Length
74182 bases
Position
chrX:40516588-40590769
Accession
110286566
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_CAROLIEiJ_P0091336ResIIIPF04851.154.1e-1211
MGP_CAROLIEiJ_P0091335ResIIIPF04851.151.1e-1111
MGP_CAROLIEiJ_P0091333ResIIIPF04851.151.7e-1111
MGP_CAROLIEiJ_P0091332ResIIIPF04851.151.8e-1111
MGP_CAROLIEiJ_P0091334ResIIIPF04851.151.8e-1111
MGP_CAROLIEiJ_P0091332DEADPF00270.291.2e-0611
MGP_CAROLIEiJ_P0091334DEADPF00270.291.2e-0611
MGP_CAROLIEiJ_P0091333DEADPF00270.291.3e-0611
MGP_CAROLIEiJ_P0091336DEADPF00270.292.3e-0611
MGP_CAROLIEiJ_P0091335DEADPF00270.293.1e-0611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_CAROLIEiJ_T0091336-1952-MGP_CAROLIEiJ_P0091336381 (aa)--
MGP_CAROLIEiJ_T0091337-360-MGP_CAROLIEiJ_P0091337117 (aa)--
MGP_CAROLIEiJ_T0091334-4798-MGP_CAROLIEiJ_P00913341046 (aa)-UPI000A31A8C7
MGP_CAROLIEiJ_T0091335-2304-MGP_CAROLIEiJ_P0091335768 (aa)--
MGP_CAROLIEiJ_T0091332-4025XM_021152994MGP_CAROLIEiJ_P00913321046 (aa)XP_021008653UPI000A31A8C7
MGP_CAROLIEiJ_T0091333-3992XM_021152993MGP_CAROLIEiJ_P00913331062 (aa)XP_021008652UPI000A318DF4
MGP_CAROLIEiJ_T0091338-409--- (aa)--
Gene Model
Click here to download MGP_CAROLIEiJ_G0033034's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0033034's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
MGP_CAROLIEiJ_G0033034Smarca17343.363MGP_CAROLIEiJ_G0025401Chd1l6144.304
MGP_CAROLIEiJ_G0033034Smarca17130.174MGP_CAROLIEiJ_G0018635-8230.353
MGP_CAROLIEiJ_G0033034Smarca17245.247MGP_CAROLIEiJ_G0022930Hells6547.410
MGP_CAROLIEiJ_G0033034Smarca16132.485MGP_CAROLIEiJ_G0026325Rad54l6532.934
MGP_CAROLIEiJ_G0033034Smarca17043.190MGP_CAROLIEiJ_G0021099Chd15044.362
MGP_CAROLIEiJ_G0033034Smarca16132.319MGP_CAROLIEiJ_G0025810Rad54b5733.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_CAROLIEiJ_G0033034Smarca110095.861ENSG00000102038SMARCA110095.861Homo_sapiens
MGP_CAROLIEiJ_G0033034Smarca19282.263ENSAPOG00000016035smarca59883.370Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0033034Smarca110093.767ENSAMEG00000015218SMARCA110093.953Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0033034Smarca18583.278ENSACIG00000016982smarca59983.371Amphilophus_citrinellus
MGP_CAROLIEiJ_G0033034Smarca19282.263ENSAOCG00000015578smarca59581.206Amphiprion_ocellaris
MGP_CAROLIEiJ_G0033034Smarca19282.263ENSAPEG00000011117smarca59983.373Amphiprion_percula
MGP_CAROLIEiJ_G0033034Smarca19679.960ENSATEG00000012894smarca59780.237Anabas_testudineus
MGP_CAROLIEiJ_G0033034Smarca19390.983ENSAPLG00000013149SMARCA110090.983Anas_platyrhynchos
MGP_CAROLIEiJ_G0033034Smarca19788.834ENSACAG00000011376SMARCA19590.159Anolis_carolinensis
MGP_CAROLIEiJ_G0033034Smarca19890.988ENSANAG00000023098SMARCA110090.781Aotus_nancymaae
MGP_CAROLIEiJ_G0033034Smarca19679.980ENSACLG00000025356smarca59581.846Astatotilapia_calliptera
MGP_CAROLIEiJ_G0033034Smarca19779.728ENSAMXG00000005709smarca59482.653Astyanax_mexicanus
MGP_CAROLIEiJ_G0033034Smarca18788.344ENSAMXG00000011227smarca19989.576Astyanax_mexicanus
MGP_CAROLIEiJ_G0033034Smarca110094.041ENSBTAG00000002292SMARCA110093.655Bos_taurus
MGP_CAROLIEiJ_G0033034Smarca19163.023WBGene00002169isw-19663.023Caenorhabditis_elegans
MGP_CAROLIEiJ_G0033034Smarca19895.973ENSCJAG00000002868SMARCA110095.673Callithrix_jacchus
MGP_CAROLIEiJ_G0033034Smarca19693.716ENSCAFG00000018673SMARCA19987.779Canis_familiaris
MGP_CAROLIEiJ_G0033034Smarca110095.579ENSCAFG00020001751SMARCA110095.767Canis_lupus_dingo
MGP_CAROLIEiJ_G0033034Smarca110094.841ENSCHIG00000009837SMARCA110094.934Capra_hircus
MGP_CAROLIEiJ_G0033034Smarca19596.566ENSTSYG00000004240SMARCA19996.566Carlito_syrichta
MGP_CAROLIEiJ_G0033034Smarca19795.618ENSCPOG00000013601SMARCA110094.079Cavia_porcellus
MGP_CAROLIEiJ_G0033034Smarca19892.905ENSCCAG00000030817SMARCA110092.662Cebus_capucinus
MGP_CAROLIEiJ_G0033034Smarca110095.893ENSCATG00000015921SMARCA110095.893Cercocebus_atys
MGP_CAROLIEiJ_G0033034Smarca19894.727ENSCLAG00000002171SMARCA110094.544Chinchilla_lanigera
MGP_CAROLIEiJ_G0033034Smarca110095.861ENSCSAG00000008460SMARCA110095.861Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0033034Smarca19590.954ENSCPBG00000001146SMARCA19590.954Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0033034Smarca19371.615ENSCING00000004110swi/snf9871.615Ciona_intestinalis
MGP_CAROLIEiJ_G0033034Smarca19272.008ENSCSAVG00000004620-10073.497Ciona_savignyi
MGP_CAROLIEiJ_G0033034Smarca110095.767ENSCANG00000007183SMARCA110095.767Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0033034Smarca110096.429ENSCGRG00001010776Smarca110096.429Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0033034Smarca19597.172ENSCGRG00000015301Smarca19997.172Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0033034Smarca19282.917ENSCSEG00000000328smarca59581.407Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0033034Smarca19282.096ENSCVAG00000008668smarca59982.921Cyprinodon_variegatus
MGP_CAROLIEiJ_G0033034Smarca19282.245ENSDARG00000052348smarca59482.245Danio_rerio
MGP_CAROLIEiJ_G0033034Smarca19484.479ENSDARG00000012776smarca19884.479Danio_rerio
MGP_CAROLIEiJ_G0033034Smarca19993.660ENSDNOG00000004315SMARCA110093.660Dasypus_novemcinctus
MGP_CAROLIEiJ_G0033034Smarca110095.029ENSDORG00000009270Smarca110095.029Dipodomys_ordii
MGP_CAROLIEiJ_G0033034Smarca19173.145FBgn0011604Iswi9871.288Drosophila_melanogaster
MGP_CAROLIEiJ_G0033034Smarca17893.750ENSETEG00000017426SMARCA18693.750Echinops_telfairi
MGP_CAROLIEiJ_G0033034Smarca19379.635ENSEBUG00000001239smarca59779.635Eptatretus_burgeri
MGP_CAROLIEiJ_G0033034Smarca19294.922ENSEASG00005008218SMARCA110091.859Equus_asinus_asinus
MGP_CAROLIEiJ_G0033034Smarca110095.122ENSECAG00000012106SMARCA110095.216Equus_caballus
MGP_CAROLIEiJ_G0033034Smarca17797.682ENSEEUG00000014927SMARCA18397.682Erinaceus_europaeus
MGP_CAROLIEiJ_G0033034Smarca19485.871ENSELUG00000010515smarca19886.041Esox_lucius
MGP_CAROLIEiJ_G0033034Smarca110095.951ENSFCAG00000018496SMARCA110095.951Felis_catus
MGP_CAROLIEiJ_G0033034Smarca18990.483ENSFALG00000000209SMARCA19891.886Ficedula_albicollis
MGP_CAROLIEiJ_G0033034Smarca19595.015ENSFDAG00000009818SMARCA19895.015Fukomys_damarensis
MGP_CAROLIEiJ_G0033034Smarca19382.168ENSFHEG00000007687smarca59184.912Fundulus_heteroclitus
MGP_CAROLIEiJ_G0033034Smarca19489.257ENSGALG00000008431SMARCA19790.733Gallus_gallus
MGP_CAROLIEiJ_G0033034Smarca19381.966ENSGAFG00000017731smarca59581.407Gambusia_affinis
MGP_CAROLIEiJ_G0033034Smarca19292.078ENSGAGG00000023575SMARCA110092.078Gopherus_agassizii
MGP_CAROLIEiJ_G0033034Smarca19389.888ENSGGOG00000012841-9896.000Gorilla_gorilla
MGP_CAROLIEiJ_G0033034Smarca110094.167ENSHGLG00000003080SMARCA110094.356Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0033034Smarca19495.405ENSHGLG00100001102SMARCA110095.405Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0033034Smarca19282.299ENSHCOG00000005458smarca59780.336Hippocampus_comes
MGP_CAROLIEiJ_G0033034Smarca19684.180ENSIPUG00000016905Smarca19985.873Ictalurus_punctatus
MGP_CAROLIEiJ_G0033034Smarca19878.805ENSIPUG00000005229SMARCA59781.534Ictalurus_punctatus
MGP_CAROLIEiJ_G0033034Smarca110095.390ENSSTOG00000014524SMARCA110095.390Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0033034Smarca110095.951ENSJJAG00000002593Smarca110095.951Jaculus_jaculus
MGP_CAROLIEiJ_G0033034Smarca19282.503ENSKMAG00000003777smarca59581.709Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0033034Smarca19481.307ENSLBEG00000018112smarca59581.307Labrus_bergylta
MGP_CAROLIEiJ_G0033034Smarca18982.372ENSLBEG00000013295SMARCA110084.197Labrus_bergylta
MGP_CAROLIEiJ_G0033034Smarca19588.404ENSLACG00000016697SMARCA19988.404Latimeria_chalumnae
MGP_CAROLIEiJ_G0033034Smarca19487.625ENSLOCG00000014591smarca19787.625Lepisosteus_oculatus
MGP_CAROLIEiJ_G0033034Smarca19595.825ENSLAFG00000000896SMARCA110095.825Loxodonta_africana
MGP_CAROLIEiJ_G0033034Smarca110095.893ENSMFAG00000002117SMARCA110095.893Macaca_fascicularis
MGP_CAROLIEiJ_G0033034Smarca110095.893ENSMMUG00000008818SMARCA110095.893Macaca_mulatta
MGP_CAROLIEiJ_G0033034Smarca110095.893ENSMNEG00000041768SMARCA110095.893Macaca_nemestrina
MGP_CAROLIEiJ_G0033034Smarca110095.767ENSMLEG00000043198SMARCA110095.767Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0033034Smarca19282.503ENSMAMG00000014294smarca59581.608Mastacembelus_armatus
MGP_CAROLIEiJ_G0033034Smarca19679.980ENSMZEG00005009369smarca59581.846Maylandia_zebra
MGP_CAROLIEiJ_G0033034Smarca19589.020ENSMGAG00000007042SMARCA110089.020Meleagris_gallopavo
MGP_CAROLIEiJ_G0033034Smarca110097.803ENSMAUG00000008133Smarca110097.803Mesocricetus_auratus
MGP_CAROLIEiJ_G0033034Smarca19895.681ENSMICG00000015768SMARCA110095.198Microcebus_murinus
MGP_CAROLIEiJ_G0033034Smarca110097.178ENSMOCG00000009464Smarca110097.178Microtus_ochrogaster
MGP_CAROLIEiJ_G0033034Smarca19479.598ENSMMOG00000005547smarca59979.598Mola_mola
MGP_CAROLIEiJ_G0033034Smarca19888.428ENSMODG00000013187-9988.235Monodelphis_domestica
MGP_CAROLIEiJ_G0033034Smarca19281.892ENSMALG00000002081smarca59781.372Monopterus_albus
MGP_CAROLIEiJ_G0033034Smarca110099.623ENSMUSG00000031099Smarca110099.623Mus_musculus
MGP_CAROLIEiJ_G0033034Smarca110099.331MGP_PahariEiJ_G0031579Smarca110099.331Mus_pahari
MGP_CAROLIEiJ_G0033034Smarca110099.812MGP_SPRETEiJ_G0034192Smarca110099.812Mus_spretus
MGP_CAROLIEiJ_G0033034Smarca110095.319ENSMPUG00000017423SMARCA19594.605Mustela_putorius_furo
MGP_CAROLIEiJ_G0033034Smarca19893.475ENSMLUG00000029614SMARCA110092.472Myotis_lucifugus
MGP_CAROLIEiJ_G0033034Smarca110097.039ENSNGAG00000006492Smarca110097.039Nannospalax_galili
MGP_CAROLIEiJ_G0033034Smarca19282.706ENSNBRG00000004463smarca59981.809Neolamprologus_brichardi
MGP_CAROLIEiJ_G0033034Smarca19894.313ENSNLEG00000015179SMARCA19996.158Nomascus_leucogenys
MGP_CAROLIEiJ_G0033034Smarca19283.310ENSMEUG00000008819SMARCA19980.902Notamacropus_eugenii
MGP_CAROLIEiJ_G0033034Smarca19893.834ENSODEG00000012163SMARCA110093.478Octodon_degus
MGP_CAROLIEiJ_G0033034Smarca19680.078ENSONIG00000009993smarca59581.946Oreochromis_niloticus
MGP_CAROLIEiJ_G0033034Smarca19292.387ENSOANG00000002862SMARCA110092.387Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0033034Smarca110093.503ENSOCUG00000001047SMARCA110093.791Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0033034Smarca19282.197ENSORLG00000021998smarca59780.237Oryzias_latipes
MGP_CAROLIEiJ_G0033034Smarca19282.299ENSORLG00020017679smarca59780.336Oryzias_latipes_hni
MGP_CAROLIEiJ_G0033034Smarca19282.197ENSORLG00015017210smarca59780.138Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0033034Smarca19282.197ENSOMEG00000000086smarca59780.138Oryzias_melastigma
MGP_CAROLIEiJ_G0033034Smarca110094.798ENSOGAG00000004399SMARCA110094.240Otolemur_garnettii
MGP_CAROLIEiJ_G0033034Smarca19595.285ENSOARG00000014638SMARCA110096.853Ovis_aries
MGP_CAROLIEiJ_G0033034Smarca110095.861ENSPPAG00000034647SMARCA110095.861Pan_paniscus
MGP_CAROLIEiJ_G0033034Smarca110095.951ENSPPRG00000008929SMARCA110095.951Panthera_pardus
MGP_CAROLIEiJ_G0033034Smarca19594.521ENSPTIG00000000915SMARCA19894.521Panthera_tigris_altaica
MGP_CAROLIEiJ_G0033034Smarca110095.893ENSPTRG00000049876SMARCA110095.893Pan_troglodytes
MGP_CAROLIEiJ_G0033034Smarca110095.861ENSPANG00000003871SMARCA110095.861Papio_anubis
MGP_CAROLIEiJ_G0033034Smarca19187.198ENSPKIG00000013411smarca19687.447Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0033034Smarca19589.686ENSPSIG00000010101SMARCA110091.770Pelodiscus_sinensis
MGP_CAROLIEiJ_G0033034Smarca110098.472ENSPEMG00000017503Smarca110098.472Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0033034Smarca19788.987ENSPCIG00000015460SMARCA19890.656Phascolarctos_cinereus
MGP_CAROLIEiJ_G0033034Smarca19282.299ENSPFOG00000007649smarca59581.407Poecilia_formosa
MGP_CAROLIEiJ_G0033034Smarca19282.299ENSPLAG00000003363smarca59581.407Poecilia_latipinna
MGP_CAROLIEiJ_G0033034Smarca19282.197ENSPMEG00000019849smarca59581.307Poecilia_mexicana
MGP_CAROLIEiJ_G0033034Smarca19282.197ENSPREG00000023250smarca59581.307Poecilia_reticulata
MGP_CAROLIEiJ_G0033034Smarca19893.384ENSPPYG00000020703SMARCA110093.133Pongo_abelii
MGP_CAROLIEiJ_G0033034Smarca18990.247ENSPCOG00000020722SMARCA19491.605Propithecus_coquereli
MGP_CAROLIEiJ_G0033034Smarca19294.133ENSPVAG00000003805SMARCA19494.208Pteropus_vampyrus
MGP_CAROLIEiJ_G0033034Smarca17583.934ENSPNYG00000012299smarca59281.166Pundamilia_nyererei
MGP_CAROLIEiJ_G0033034Smarca110098.117ENSRNOG00000003762Smarca110098.117Rattus_norvegicus
MGP_CAROLIEiJ_G0033034Smarca110095.767ENSRROG00000034167SMARCA110095.767Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0033034Smarca19397.157ENSSBOG00000020641SMARCA110097.157Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0033034Smarca19285.509ENSSHAG00000013518SMARCA19985.509Sarcophilus_harrisii
MGP_CAROLIEiJ_G0033034Smarca19685.182ENSSFOG00015009043smarca19886.355Scleropages_formosus
MGP_CAROLIEiJ_G0033034Smarca19481.143ENSSFOG00015016794smarca510082.577Scleropages_formosus
MGP_CAROLIEiJ_G0033034Smarca19381.250ENSSMAG00000004801smarca59581.250Scophthalmus_maximus
MGP_CAROLIEiJ_G0033034Smarca19282.197ENSSDUG00000020690smarca59681.307Seriola_dumerili
MGP_CAROLIEiJ_G0033034Smarca19282.197ENSSLDG00000025190smarca59681.307Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0033034Smarca18395.880ENSSARG00000000842SMARCA18497.518Sorex_araneus
MGP_CAROLIEiJ_G0033034Smarca19589.798ENSSPUG00000000590SMARCA19590.132Sphenodon_punctatus
MGP_CAROLIEiJ_G0033034Smarca19282.263ENSSPAG00000002894smarca59783.370Stegastes_partitus
MGP_CAROLIEiJ_G0033034Smarca19994.828ENSSSCG00000012649SMARCA110094.828Sus_scrofa
MGP_CAROLIEiJ_G0033034Smarca19390.578ENSTGUG00000003899-10090.578Taeniopygia_guttata
MGP_CAROLIEiJ_G0033034Smarca19282.671ENSTRUG00000014094smarca59581.709Takifugu_rubripes
MGP_CAROLIEiJ_G0033034Smarca19281.957ENSTNIG00000017717smarca59481.005Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0033034Smarca18694.841ENSTBEG00000014973SMARCA19194.841Tupaia_belangeri
MGP_CAROLIEiJ_G0033034Smarca19492.462ENSTTRG00000006168SMARCA110092.462Tursiops_truncatus
MGP_CAROLIEiJ_G0033034Smarca110095.014ENSUAMG00000020201SMARCA110095.202Ursus_americanus
MGP_CAROLIEiJ_G0033034Smarca19989.158ENSUMAG00000004073SMARCA19996.659Ursus_maritimus
MGP_CAROLIEiJ_G0033034Smarca17498.413ENSVPAG00000010492-8098.413Vicugna_pacos
MGP_CAROLIEiJ_G0033034Smarca19596.617ENSVVUG00000008878SMARCA110096.885Vulpes_vulpes
MGP_CAROLIEiJ_G0033034Smarca19487.313ENSXETG00000001526smarca19987.313Xenopus_tropicalis
MGP_CAROLIEiJ_G0033034Smarca19381.864ENSXCOG00000011170smarca59881.307Xiphophorus_couchianus
MGP_CAROLIEiJ_G0033034Smarca19381.864ENSXMAG00000009678smarca59883.442Xiphophorus_maculatus

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