EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0033367 (Gene tree)
Gene ID: 110287041
Gene Symbol: Pabpc5
Alias: -
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 3002 bases
Position: chrX:112601178-112604179
Accession: 110287041
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0092588	RRM_5	PF13893.6	1.4e-12	1	3
MGP_CAROLIEiJ_P0092588	RRM_5	PF13893.6	1.4e-12	2	3
MGP_CAROLIEiJ_P0092588	RRM_5	PF13893.6	1.4e-12	3	3
MGP_CAROLIEiJ_P0092589	RRM_5	PF13893.6	1.4e-12	1	3
MGP_CAROLIEiJ_P0092589	RRM_5	PF13893.6	1.4e-12	2	3
MGP_CAROLIEiJ_P0092589	RRM_5	PF13893.6	1.4e-12	3	3
MGP_CAROLIEiJ_P0092588	RRM_1	PF00076.22	1.8e-77	1	4
MGP_CAROLIEiJ_P0092588	RRM_1	PF00076.22	1.8e-77	2	4
MGP_CAROLIEiJ_P0092588	RRM_1	PF00076.22	1.8e-77	3	4
MGP_CAROLIEiJ_P0092588	RRM_1	PF00076.22	1.8e-77	4	4
MGP_CAROLIEiJ_P0092589	RRM_1	PF00076.22	1.8e-77	1	4
MGP_CAROLIEiJ_P0092589	RRM_1	PF00076.22	1.8e-77	2	4
MGP_CAROLIEiJ_P0092589	RRM_1	PF00076.22	1.8e-77	3	4
MGP_CAROLIEiJ_P0092589	RRM_1	PF00076.22	1.8e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0092588	-	2469	XM_021153721	MGP_CAROLIEiJ_P0092588	381 (aa)	XP_021009380	UPI000A3173D8
MGP_CAROLIEiJ_T0092589	-	2273	-	MGP_CAROLIEiJ_P0092589	381 (aa)	XP_021009381	UPI000A3173D8

Gene Model

Click here to download MGP_CAROLIEiJ_G0033367's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0033367's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0033367	Pabpc5	94	62.838	MGP_CAROLIEiJ_G0024864	-	57	62.838
MGP_CAROLIEiJ_G0033367	Pabpc5	95	58.445	MGP_CAROLIEiJ_G0021058	Pabpc6	59	58.470
MGP_CAROLIEiJ_G0033367	Pabpc5	63	34.483	MGP_CAROLIEiJ_G0032305	Celf6	52	34.483
MGP_CAROLIEiJ_G0033367	Pabpc5	96	63.158	MGP_CAROLIEiJ_G0019740	Pabpc1	56	63.291
MGP_CAROLIEiJ_G0033367	Pabpc5	94	37.037	MGP_CAROLIEiJ_G0026159	Elavl2	89	37.037
MGP_CAROLIEiJ_G0033367	Pabpc5	70	35.955	MGP_CAROLIEiJ_G0015643	-	66	34.426
MGP_CAROLIEiJ_G0033367	Pabpc5	96	58.242	MGP_CAROLIEiJ_G0024968	Pabpc4l	97	58.146
MGP_CAROLIEiJ_G0033367	Pabpc5	93	33.333	MGP_CAROLIEiJ_G0028595	Tia1	84	34.247
MGP_CAROLIEiJ_G0033367	Pabpc5	95	64.738	MGP_CAROLIEiJ_G0026435	-	100	68.794
MGP_CAROLIEiJ_G0033367	Pabpc5	96	61.111	MGP_CAROLIEiJ_G0022217	Pabpc2	59	60.955
MGP_CAROLIEiJ_G0033367	Pabpc5	96	56.667	MGP_CAROLIEiJ_G0024627	Pabpc1l	64	56.742
MGP_CAROLIEiJ_G0033367	Pabpc5	61	36.709	MGP_CAROLIEiJ_G0025314	Celf3	96	35.616

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.987	ENSG00000174740	PABPC5	99	94.987	Homo_sapiens
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.668	ENSAMEG00000020114	PABPC5	99	93.668	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.987	ENSANAG00000005063	PABPC5	99	94.987	Aotus_nancymaae
MGP_CAROLIEiJ_G0033367	Pabpc5	99	92.895	ENSBTAG00000019942	PABPC5	99	92.895	Bos_taurus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.459	ENSCJAG00000003665	PABPC5	99	94.459	Callithrix_jacchus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.158	ENSCAFG00000017452	PABPC5	99	93.158	Canis_familiaris
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.158	ENSCHIG00000019004	PABPC5	99	93.158	Capra_hircus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.211	ENSTSYG00000036351	PABPC5	99	94.211	Carlito_syrichta
MGP_CAROLIEiJ_G0033367	Pabpc5	99	84.615	ENSCAPG00000010714	PABPC5	99	84.615	Cavia_aperea
MGP_CAROLIEiJ_G0033367	Pabpc5	99	90.526	ENSCPOG00000002555	PABPC5	99	90.526	Cavia_porcellus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.987	ENSCCAG00000032154	PABPC5	99	94.987	Cebus_capucinus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.723	ENSCATG00000043083	PABPC5	99	94.723	Cercocebus_atys
MGP_CAROLIEiJ_G0033367	Pabpc5	99	91.842	ENSCLAG00000000647	PABPC5	99	91.842	Chinchilla_lanigera
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.723	ENSCSAG00000000065	PABPC5	99	94.723	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.723	ENSCANG00000011473	PABPC5	99	94.723	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	91.579	ENSCGRG00000018699	Pabpc5	99	91.579	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0033367	Pabpc5	99	75.591	ENSETEG00000011832	PABPC5	99	75.591	Echinops_telfairi
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.947	ENSEASG00005014396	PABPC5	99	93.947	Equus_asinus_asinus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.947	ENSECAG00000003452	PABPC5	99	93.947	Equus_caballus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.158	ENSFCAG00000004998	PABPC5	99	93.158	Felis_catus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	92.368	ENSFDAG00000000126	PABPC5	99	92.368	Fukomys_damarensis
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.987	ENSGGOG00000007622	PABPC5	99	94.987	Gorilla_gorilla
MGP_CAROLIEiJ_G0033367	Pabpc5	95	90.826	ENSJJAG00000011960	Pabpc5	100	90.826	Jaculus_jaculus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.723	ENSMFAG00000024561	PABPC5	99	94.723	Macaca_fascicularis
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.723	ENSMMUG00000011562	PABPC5	99	94.723	Macaca_mulatta
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.723	ENSMNEG00000037604	PABPC5	99	94.723	Macaca_nemestrina
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.723	ENSMLEG00000028318	PABPC5	99	94.723	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.421	ENSMICG00000041706	PABPC5	99	93.421	Microcebus_murinus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.158	ENSMOCG00000001554	Pabpc5	99	93.158	Microtus_ochrogaster
MGP_CAROLIEiJ_G0033367	Pabpc5	100	99.475	ENSMUSG00000034732	Pabpc5	100	99.475	Mus_musculus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	99.211	MGP_PahariEiJ_G0031908	Pabpc5	99	99.211	Mus_pahari
MGP_CAROLIEiJ_G0033367	Pabpc5	100	99.475	MGP_SPRETEiJ_G0034533	Pabpc5	100	99.475	Mus_spretus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	92.895	ENSMPUG00000018465	PABPC5	99	92.895	Mustela_putorius_furo
MGP_CAROLIEiJ_G0033367	Pabpc5	99	92.632	ENSMLUG00000008244	PABPC5	99	92.632	Myotis_lucifugus
MGP_CAROLIEiJ_G0033367	Pabpc5	95	92.661	ENSNGAG00000004371	Pabpc5	100	92.661	Nannospalax_galili
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.987	ENSNLEG00000035086	PABPC5	99	94.987	Nomascus_leucogenys
MGP_CAROLIEiJ_G0033367	Pabpc5	97	95.890	ENSOPRG00000000856	PABPC5	99	95.890	Ochotona_princeps
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.947	ENSOCUG00000010919	PABPC5	99	93.947	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	92.895	ENSOGAG00000006882	PABPC5	99	92.895	Otolemur_garnettii
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.421	ENSOARG00000010260	PABPC5	99	93.421	Ovis_aries
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.987	ENSPPAG00000007378	PABPC5	99	94.987	Pan_paniscus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.158	ENSPPRG00000010742	PABPC5	99	93.158	Panthera_pardus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.158	ENSPTIG00000001480	PABPC5	99	93.158	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.987	ENSPTRG00000022078	PABPC5	99	94.987	Pan_troglodytes
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.723	ENSPANG00000018282	PABPC5	99	94.723	Papio_anubis
MGP_CAROLIEiJ_G0033367	Pabpc5	99	92.632	ENSPEMG00000000171	Pabpc5	99	92.632	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.987	ENSPPYG00000020526	PABPC5	99	94.987	Pongo_abelii
MGP_CAROLIEiJ_G0033367	Pabpc5	98	95.238	ENSPCAG00000015577	PABPC5	99	95.238	Procavia_capensis
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.684	ENSPCOG00000000676	PABPC5	99	93.684	Propithecus_coquereli
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.947	ENSPVAG00000006465	PABPC5	99	93.947	Pteropus_vampyrus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	96.316	ENSRNOG00000003354	Pabpc5	99	96.316	Rattus_norvegicus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.723	ENSRBIG00000011760	PABPC5	99	94.723	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.723	ENSRROG00000036708	PABPC5	99	94.723	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.723	ENSSBOG00000008658	PABPC5	99	94.723	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0033367	Pabpc5	99	90.789	ENSSARG00000014012	PABPC5	99	90.789	Sorex_araneus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.158	ENSSSCG00000040194	PABPC5	99	93.158	Sus_scrofa
MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.474	ENSTBEG00000016482	PABPC5	99	94.474	Tupaia_belangeri
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.158	ENSUAMG00000013627	PABPC5	99	93.158	Ursus_americanus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	92.895	ENSUMAG00000023934	PABPC5	99	92.895	Ursus_maritimus
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.421	ENSVPAG00000001063	PABPC5	99	93.421	Vicugna_pacos
MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.421	ENSVVUG00000013172	PABPC5	99	93.421	Vulpes_vulpes