EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0016816 (Gene tree)
Gene ID: -
Gene Symbol: Cirbp
Alias: Cirp|R74941
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 6724 bases
Position: chr10:80359882-80366605
Accession: 893588
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0025518	RRM_1	PF00076.22	5.2e-26	1	1
MGP_CASTEiJ_P0025520	RRM_1	PF00076.22	1.3e-25	1	1
MGP_CASTEiJ_P0025519	RRM_1	PF00076.22	1.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0025518	-	423	XM_006513164	MGP_CASTEiJ_P0025518	108 (aa)	XP_006513227	P60824
MGP_CASTEiJ_T0025519	-	1319	-	MGP_CASTEiJ_P0025519	172 (aa)	-	-
MGP_CASTEiJ_T0025523	-	894	-	-	- (aa)	-	-
MGP_CASTEiJ_T0025522	-	912	-	-	- (aa)	-	-
MGP_CASTEiJ_T0025521	-	376	-	-	- (aa)	-	-
MGP_CASTEiJ_T0025520	-	831	-	MGP_CASTEiJ_P0025520	168 (aa)	-	-
MGP_CASTEiJ_T0025524	-	593	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0016816's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0016816's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0016816	Cirbp	79	37.500	MGP_CASTEiJ_G0033478	Elavl3	62	37.500
MGP_CASTEiJ_G0016816	Cirbp	84	38.889	MGP_CASTEiJ_G0027708	Elavl4	70	38.889
MGP_CASTEiJ_G0016816	Cirbp	92	42.105	MGP_CASTEiJ_G0016822	-	74	47.273
MGP_CASTEiJ_G0016816	Cirbp	68	34.247	MGP_CASTEiJ_G0020659	Pspc1	69	41.304
MGP_CASTEiJ_G0016816	Cirbp	91	39.759	MGP_CASTEiJ_G0026012	Pabpc1l	53	39.759
MGP_CASTEiJ_G0016816	Cirbp	78	40.476	MGP_CASTEiJ_G0026128	Rbm38	74	38.043
MGP_CASTEiJ_G0016816	Cirbp	91	35.714	MGP_CASTEiJ_G0030063	Tia1	80	37.778
MGP_CASTEiJ_G0016816	Cirbp	84	31.868	MGP_CASTEiJ_G0025991	Srsf6	61	31.868
MGP_CASTEiJ_G0016816	Cirbp	81	30.682	MGP_CASTEiJ_G0021144	Gm12355	63	30.682
MGP_CASTEiJ_G0016816	Cirbp	85	38.043	MGP_CASTEiJ_G0021985	Ncbp2	54	36.471
MGP_CASTEiJ_G0016816	Cirbp	94	43.548	MGP_CASTEiJ_G0029831	Hnrnpa2b1	75	44.737
MGP_CASTEiJ_G0016816	Cirbp	73	36.709	MGP_CASTEiJ_G0028892	Hnrnpdl	54	36.709
MGP_CASTEiJ_G0016816	Cirbp	86	37.931	MGP_CASTEiJ_G0028890	Hnrnpd	68	37.931
MGP_CASTEiJ_G0016816	Cirbp	73	37.975	MGP_CASTEiJ_G0028079	-	75	37.805
MGP_CASTEiJ_G0016816	Cirbp	99	59.302	MGP_CASTEiJ_G0034524	Rbm3	100	62.209
MGP_CASTEiJ_G0016816	Cirbp	87	40.351	MGP_CASTEiJ_G0029073	Msi1	51	38.983
MGP_CASTEiJ_G0016816	Cirbp	81	32.955	MGP_CASTEiJ_G0022681	Srsf3	67	32.955
MGP_CASTEiJ_G0016816	Cirbp	79	63.529	MGP_CASTEiJ_G0034713	Rbmx	83	63.529
MGP_CASTEiJ_G0016816	Cirbp	76	37.500	MGP_CASTEiJ_G0027579	Elavl2	64	37.500
MGP_CASTEiJ_G0016816	Cirbp	88	43.243	MGP_CASTEiJ_G0018234	Msi2	61	41.429
MGP_CASTEiJ_G0016816	Cirbp	80	32.558	MGP_CASTEiJ_G0024528	Celf2	82	33.333
MGP_CASTEiJ_G0016816	Cirbp	85	40.244	MGP_CASTEiJ_G0032110	Tial1	67	40.244