EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0016822 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 28681 bases
Position: chr10:80458355-80487035
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0025548	RRM_1	PF00076.22	1.5e-36	1	2
MGP_CASTEiJ_P0025548	RRM_1	PF00076.22	1.5e-36	2	2
MGP_CASTEiJ_P0025549	RRM_1	PF00076.22	2.4e-36	1	2
MGP_CASTEiJ_P0025549	RRM_1	PF00076.22	2.4e-36	2	2
MGP_CASTEiJ_P0025550	RRM_1	PF00076.22	2.4e-36	1	2
MGP_CASTEiJ_P0025550	RRM_1	PF00076.22	2.4e-36	2	2
MGP_CASTEiJ_P0025551	RRM_1	PF00076.22	2.4e-36	1	2
MGP_CASTEiJ_P0025551	RRM_1	PF00076.22	2.4e-36	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0025552	-	581	-	-	- (aa)	-	-
MGP_CASTEiJ_T0025553	-	1083	-	-	- (aa)	-	-
MGP_CASTEiJ_T0025550	-	1520	-	MGP_CASTEiJ_P0025550	400 (aa)	-	-
MGP_CASTEiJ_T0025551	-	1977	-	MGP_CASTEiJ_P0025551	400 (aa)	-	-
MGP_CASTEiJ_T0025549	-	2064	-	MGP_CASTEiJ_P0025549	399 (aa)	-	-
MGP_CASTEiJ_T0025548	-	598	-	MGP_CASTEiJ_P0025548	171 (aa)	-	-
MGP_CASTEiJ_T0025554	-	438	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0016822's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0016822's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0016822	-	99	40.244	MGP_CASTEiJ_G0029831	Hnrnpa2b1	75	35.000
MGP_CASTEiJ_G0016822	-	98	44.311	MGP_CASTEiJ_G0029073	Msi1	88	42.308
MGP_CASTEiJ_G0016822	-	64	30.275	MGP_CASTEiJ_G0027708	Elavl4	66	42.373
MGP_CASTEiJ_G0016822	-	92	49.462	MGP_CASTEiJ_G0018234	Msi2	99	42.400
MGP_CASTEiJ_G0016822	-	99	34.615	MGP_CASTEiJ_G0019890	Hnrnpa0	71	31.915
MGP_CASTEiJ_G0016822	-	99	39.521	MGP_CASTEiJ_G0028890	Hnrnpd	91	37.333
MGP_CASTEiJ_G0016822	-	99	39.881	MGP_CASTEiJ_G0028892	Hnrnpdl	76	36.437
MGP_CASTEiJ_G0016822	-	86	35.802	MGP_CASTEiJ_G0026128	Rbm38	77	35.484
MGP_CASTEiJ_G0016822	-	76	31.061	MGP_CASTEiJ_G0023880	Rbm14	89	31.061
MGP_CASTEiJ_G0016822	-	94	34.483	MGP_CASTEiJ_G0025939	Rbm39	52	34.483
MGP_CASTEiJ_G0016822	-	77	39.744	MGP_CASTEiJ_G0015387	Boll	83	44.186
MGP_CASTEiJ_G0016822	-	89	35.065	MGP_CASTEiJ_G0028244	Tardbp	88	31.818
MGP_CASTEiJ_G0016822	-	78	30.147	MGP_CASTEiJ_G0023877	Gm21992	90	31.061
MGP_CASTEiJ_G0016822	-	74	47.273	MGP_CASTEiJ_G0016816	Cirbp	92	42.105
MGP_CASTEiJ_G0016822	-	88	39.744	MGP_CASTEiJ_G0034713	Rbmx	94	50.000
MGP_CASTEiJ_G0016822	-	89	33.846	MGP_CASTEiJ_G0019281	Slirp	79	33.803
MGP_CASTEiJ_G0016822	-	78	46.032	MGP_CASTEiJ_G0034524	Rbm3	81	41.176
MGP_CASTEiJ_G0016822	-	99	40.588	MGP_CASTEiJ_G0017584	Hnrnpab	73	37.398