EuRBPDB

Description

Ensembl ID: MGP_CASTEiJ_G0017584 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpab
Alias: 3010025C11Rik|CBF-A|Cbf-a|Cgbfa|Hnrpab|Hnrpab {ECO:0000313|EMBL:EDL33661.1,GN ECO:0000313|MGI:MGI:1330294}|Hnrpab {ECO:0000313|EMBL:EDL33663.1,GN ECO:0000313|MGI:MGI:1330294}
Full Name: heterogeneous nuclear ribonucleoprotein A/B
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 6721 bases
Position: chr11:50494256-50500976
Accession: 1330294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0028359	CBFNT	PF08143.11	3.3e-19	1	1
MGP_CASTEiJ_P0028361	CBFNT	PF08143.11	3.8e-19	1	1
MGP_CASTEiJ_P0028362	CBFNT	PF08143.11	4.3e-19	1	1
MGP_CASTEiJ_P0028359	RRM_1	PF00076.22	6.5e-34	1	2
MGP_CASTEiJ_P0028359	RRM_1	PF00076.22	6.5e-34	2	2
MGP_CASTEiJ_P0028361	RRM_1	PF00076.22	8.7e-34	1	2
MGP_CASTEiJ_P0028361	RRM_1	PF00076.22	8.7e-34	2	2
MGP_CASTEiJ_P0028362	RRM_1	PF00076.22	1.1e-33	1	2
MGP_CASTEiJ_P0028362	RRM_1	PF00076.22	1.1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0028362	-	1437	-	MGP_CASTEiJ_P0028362	332 (aa)	-	-
MGP_CASTEiJ_T0028360	-	1253	-	MGP_CASTEiJ_P0028360	331 (aa)	-	-
MGP_CASTEiJ_T0028361	-	2012	-	MGP_CASTEiJ_P0028361	311 (aa)	-	-
MGP_CASTEiJ_T0028359	-	2371	-	MGP_CASTEiJ_P0028359	285 (aa)	-	Q99020

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0017584	Hnrnpab	79	40.800	MGP_CASTEiJ_G0029073	Msi1	58	48.052
MGP_CASTEiJ_G0017584	Hnrnpab	65	31.414	MGP_CASTEiJ_G0033906	Celf6	66	32.500
MGP_CASTEiJ_G0017584	Hnrnpab	64	38.462	MGP_CASTEiJ_G0029831	Hnrnpa2b1	73	39.216
MGP_CASTEiJ_G0017584	Hnrnpab	72	52.000	MGP_CASTEiJ_G0018234	Msi2	100	52.212
MGP_CASTEiJ_G0017584	Hnrnpab	51	33.846	MGP_CASTEiJ_G0019281	Slirp	73	33.846
MGP_CASTEiJ_G0017584	Hnrnpab	57	35.882	MGP_CASTEiJ_G0019890	Hnrnpa0	58	35.882
MGP_CASTEiJ_G0017584	Hnrnpab	82	32.099	MGP_CASTEiJ_G0028244	Tardbp	86	33.146
MGP_CASTEiJ_G0017584	Hnrnpab	73	37.398	MGP_CASTEiJ_G0016822	-	99	40.588
MGP_CASTEiJ_G0017584	Hnrnpab	82	58.419	MGP_CASTEiJ_G0028892	Hnrnpdl	89	57.292
MGP_CASTEiJ_G0017584	Hnrnpab	88	62.799	MGP_CASTEiJ_G0028890	Hnrnpd	97	70.616