EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0017859 (Gene tree)
Gene ID: -
Gene Symbol: Polr2a
Alias: 220kDa|Rpb1|Rpii215|Rpo2-1
Full Name: polymerase (RNA) II (DNA directed) polypeptide A
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 24481 bases
Position: chr11:69843074-69867554
Accession: 98086
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_5	PF04998.17	1.3e-100	1	1
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_5	PF04998.17	1.4e-100	1	1
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	1	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	2	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	3	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	4	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	5	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	6	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	7	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	8	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	9	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	10	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	11	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	12	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	13	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	14	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	15	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	16	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	17	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	18	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	19	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	20	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	21	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	22	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	23	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	24	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	25	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	26	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	27	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	28	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	29	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	30	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	31	32
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_R	PF05001.13	1.4e-32	32	32
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	1	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	2	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	3	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	4	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	5	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	6	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	7	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	8	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	9	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	10	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	11	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	12	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	13	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	14	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	15	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	16	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	17	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	18	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	19	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	20	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	21	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	22	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	23	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	24	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	25	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	26	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	27	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	28	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	29	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	30	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	31	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	32	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	33	34
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_R	PF05001.13	3.5e-27	34	34
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_4	PF05000.17	7.6e-38	1	1
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_4	PF05000.17	7.9e-38	1	1
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_2	PF00623.20	2.4e-74	1	1
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_2	PF00623.20	2.5e-74	1	1
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_3	PF04983.18	1.8e-49	1	1
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_3	PF04983.18	1.9e-49	1	1
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_1	PF04997.12	1.1e-108	1	1
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_1	PF04997.12	1.2e-108	1	1
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_7	PF04990.12	4.4e-54	1	1
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_7	PF04990.12	4.5e-54	1	1
MGP_CASTEiJ_P0029495	RNA_pol_Rpb1_6	PF04992.14	3e-67	1	1
MGP_CASTEiJ_P0029494	RNA_pol_Rpb1_6	PF04992.14	3.1e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0029497	-	586	-	-	- (aa)	-	-
MGP_CASTEiJ_T0029496	-	689	-	-	- (aa)	-	-
MGP_CASTEiJ_T0029495	-	5799	-	MGP_CASTEiJ_P0029495	1932 (aa)	-	-
MGP_CASTEiJ_T0029494	-	6740	-	MGP_CASTEiJ_P0029494	1970 (aa)	-	P08775

Gene Model

Click here to download MGP_CASTEiJ_G0017859's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0017859's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0017859	Polr2a	51	37.143	MGP_CASTEiJ_G0029955	Polr1a	69	33.333
MGP_CASTEiJ_G0017859	Polr2a	67	38.079	MGP_CASTEiJ_G0020323	Polr3a	91	37.939