EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0018234 (Gene tree)
Gene ID: -
Gene Symbol: Msi2
Alias: 1700105C15Rik|AI451722|AI563628|AW489193|Msi2h|Musashi2|msi2h
Full Name: musashi RNA-binding protein 2
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 413690 bases
Position: chr11:89900227-90313916
Accession: 1923876
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0031084	RRM_1	PF00076.22	6.4e-34	1	2
MGP_CASTEiJ_P0031084	RRM_1	PF00076.22	6.4e-34	2	2
MGP_CASTEiJ_P0031085	RRM_1	PF00076.22	6.7e-34	1	2
MGP_CASTEiJ_P0031085	RRM_1	PF00076.22	6.7e-34	2	2
MGP_CASTEiJ_P0031088	RRM_1	PF00076.22	3.9e-22	1	1
MGP_CASTEiJ_P0031089	RRM_1	PF00076.22	3.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0031085	-	1856	-	MGP_CASTEiJ_P0031085	346 (aa)	-	-
MGP_CASTEiJ_T0031084	-	6364	XM_006534432	MGP_CASTEiJ_P0031084	328 (aa)	XP_006534495	Q920Q6
MGP_CASTEiJ_T0031087	-	2409	-	-	- (aa)	-	-
MGP_CASTEiJ_T0031086	-	1751	-	-	- (aa)	-	-
MGP_CASTEiJ_T0031089	-	669	-	MGP_CASTEiJ_P0031089	158 (aa)	-	-
MGP_CASTEiJ_T0031088	-	405	-	MGP_CASTEiJ_P0031088	113 (aa)	-	-
MGP_CASTEiJ_T0031090	-	627	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0018234's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0018234's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0018234	Msi2	99	41.228	MGP_CASTEiJ_G0019890	Hnrnpa0	59	41.989
MGP_CASTEiJ_G0018234	Msi2	100	54.867	MGP_CASTEiJ_G0028892	Hnrnpdl	78	41.634
MGP_CASTEiJ_G0018234	Msi2	100	53.982	MGP_CASTEiJ_G0028890	Hnrnpd	87	58.025
MGP_CASTEiJ_G0018234	Msi2	100	35.398	MGP_CASTEiJ_G0028244	Tardbp	79	31.818
MGP_CASTEiJ_G0018234	Msi2	100	52.212	MGP_CASTEiJ_G0017584	Hnrnpab	72	52.000
MGP_CASTEiJ_G0018234	Msi2	79	34.074	MGP_CASTEiJ_G0026128	Rbm38	70	38.095
MGP_CASTEiJ_G0018234	Msi2	99	42.400	MGP_CASTEiJ_G0016822	-	92	49.462
MGP_CASTEiJ_G0018234	Msi2	100	44.348	MGP_CASTEiJ_G0029831	Hnrnpa2b1	64	48.193
MGP_CASTEiJ_G0018234	Msi2	60	33.824	MGP_CASTEiJ_G0019281	Slirp	70	33.824
MGP_CASTEiJ_G0018234	Msi2	61	41.429	MGP_CASTEiJ_G0016816	Cirbp	88	43.243
MGP_CASTEiJ_G0018234	Msi2	61	42.857	MGP_CASTEiJ_G0034524	Rbm3	81	43.243
MGP_CASTEiJ_G0018234	Msi2	100	90.323	MGP_CASTEiJ_G0029073	Msi1	99	75.665
MGP_CASTEiJ_G0018234	Msi2	70	31.250	MGP_CASTEiJ_G0027579	Elavl2	72	32.632
MGP_CASTEiJ_G0018234	Msi2	84	30.208	MGP_CASTEiJ_G0027708	Elavl4	78	30.088
MGP_CASTEiJ_G0018234	Msi2	61	42.857	MGP_CASTEiJ_G0034713	Rbmx	88	45.205
MGP_CASTEiJ_G0018234	Msi2	50	33.333	MGP_CASTEiJ_G0015387	Boll	65	32.857